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  A computational framework for boosting confidence in high-throughput protein-protein interaction datasets

  Hosur, R., Peng, J., Vinayagam, A., Stelzl, U., Xu, J., Perrimon, N., Bienkowska, J. & Berger, B., 2012, In: Genome biology. 13, 8, p. R76

  Research output: Contribution to journal › Article › peer-review

  • protein-protein interactions
  • Datasets
  • protein
  • biomedical research
  • Biomedical Research

• A computational investigation of the phase behavior and capillary sublimation of water confined between nanoscale hydrophobic plates

  Ferguson, A. L., Giovambattista, N., Rossky, P. J., Panagiotopoulos, A. Z. & Debenedetti, P. G., Oct 14 2012, In: Journal of Chemical Physics. 137, 14, 144501.

  Research output: Contribution to journal › Article › peer-review

  • Sublimation
  • Phase behavior
  • sublimation
  • Water
  • Ice

• A computational kinetic model of diffusion for molecular systems

  Teo, I. & Schulten, K., 2013, In: Journal of Chemical Physics. 139, 12, 121929.

  Research output: Contribution to journal › Article › peer-review

  • proteins
  • kinetics
  • solutes
  • grids
  • diffusion coefficient

• A computationally designed inhibitor of an Epstein-Barr viral Bcl-2 protein induces apoptosis in infected cells

  Procko, E., Berguig, G. Y., Shen, B. W., Song, Y., Frayo, S., Convertine, A. J., Margineantu, D., Booth, G., Correia, B. E., Cheng, Y., Schief, W. R., Hockenbery, D. M., Press, O. W., Stoddard, B. L., Stayton, P. S. & Baker, D., Jun 19 2014, In: Cell. 157, 7, p. 1644-1656 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Viruses
  • Human Herpesvirus 4
  • BINDI protein
  • Apoptosis
  • Immunoconjugates

• A computationally efficient norm optimal iterative learning control approach for LTV systems

  Sun, H. & Alleyne, A. G., Jan 1 2014, In: Automatica. 50, 1, p. 141-148 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Computational complexity
  • Cost functions
  • Sampling

• A Computational Model for Kinetic Studies of Cadherin Binding and Clustering

  Chen, J., Newhall, J., Xie, Z. R., Leckband, D. & Wu, Y., Oct 4 2016, In: Biophysical journal. 111, 7, p. 1507-1518 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Cadherins
  • Cluster Analysis
  • Kinetics
  • Glycosylation
  • Adhesives

• A computational model of feedback-mediated hematopoietic stem cell differentiation in vitro

  Mahadik, B., Hannon, B. & Harley, B. A. C., Mar 2019, In: PloS one. 14, 3, e0212502.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Stem cells
  • hematopoietic stem cells
  • cell differentiation
  • Hematopoietic Stem Cells
  • Cell Differentiation

• A computational model to study film formation and debris flushing phenomena in spray-electric discharge machining

  Pattabhiraman, A., Marla, D. & Kapoor, S. G., Sep 1 2016, In: Journal of Micro and Nano-Manufacturing. 4, 3, 031002.

  Research output: Contribution to journal › Article › peer-review

  • Electric discharge machining
  • Debris
  • Dielectric films
  • Film thickness
  • Thin films

• A computational model to study film formation and debris flushing phenomena in spray- electric discharge machining

  Pattabhiraman, A., Marla, D. & Kapoor, S. G., Sep 2016, In: Journal of Micro and Nano-Manufacturing. 4, 3, 031002.

  Research output: Contribution to journal › Article › peer-review

  • Electric discharge machining
  • Debris
  • Dielectric films
  • Film thickness
  • Thin films

• A conceptual framework for mixing structures in individual aerosol particles

  Li, W., Sun, J., Xu, L., Shi, Z., Riemer, N., Sun, Y., Fu, P., Zhang, J., Lin, Y., Wang, X., Shao, L., Chen, J., Zhang, X., Wang, Z. & Wang, W., Nov 27 2016, In: Journal of Geophysical Research. 121, 22, p. 13,784-13,798

  Research output: Contribution to journal › Article › peer-review

  • aerosols
  • Aerosols
  • conceptual framework
  • Biological materials
  • aerosol

• A conceptual framework for understanding the association between school bullying victimization and substance misuse

  Hong, J. S., Davis, J. P., Sterzing, P. R., Yoon, J., Choi, S. & Smith, D. C., 2014, In: American Journal of Orthopsychiatry. 84, 6, p. 696-710 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Victimization
  • Bullying
  • Crime Victims
  • Conceptual Framework
  • Academic Performance

• A conceptual framework to promote labor force participation and career development for people with diabetes mellitus

  Strauser, D. R., Rumrill, P. D., Greco, C. & Strauser, D. G., Dec 1 2019, In: Australian Journal of Rehabilitation Counselling. 25, 2, p. 110-121 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Vocational Rehabilitation
  • Diabetes Mellitus
  • Rehabilitation Research
  • Health

• A conceptual model to assess stress-associated health effects of multiple ecosystem services degraded by disaster events in the Gulf of Mexico and elsewhere

  Sandifer, P. A., Knapp, L. C., Collier, T. K., Jones, A. L., Juster, R. P., Kelble, C. R., Kwok, R. K., Miglarese, J. V., Palinkas, L. A., Porter, D. E., Scott, G. I., Smith, L. M., Sullivan, W. C. & Sutton-Grier, A. E., Mar 1 2017, In: GeoHealth. 1, 1, p. 17-36 20 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Gulf of Mexico
  • Disasters
  • Ecosystem
  • Ecosystems
  • disaster

• A concise synthesis of (-)-lasonolide A

  Trost, B. M., Stivala, C. E., Hull, K. L., Huang, A. & Fandrick, D. R., Jan 8 2014, In: Journal of the American Chemical Society. 136, 1, p. 88-91 4 p.

  Research output: Contribution to journal › Article › peer-review

  • lasonolide A
  • Alkynes
  • alkene
  • cancer
  • Alkenes

• A "concrete view" of aging: Event related potentials reveal age-related changes in basic integrative processes in language

  Huang, H. W., Meyer, A. M. & Federmeier, K. D., Jan 2012, In: Neuropsychologia. 50, 1, p. 26-35 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Evoked Potentials
  • Language
  • Young Adult
  • Imagery (Psychotherapy)
  • Longevity

• A conditional neural fields model for protein threading

  Ma, J., Peng, J., Wang, S. & Xu, J., Jun 2012, In: Bioinformatics. 28, 12, p. i59-i66 bts213.

  Research output: Contribution to journal › Article › peer-review

  • Protein
  • Proteins
  • Protein Sequence
  • Template
  • Scoring

• A Confocal Reflection Super-Resolution Technique to Image Golgi-Cox Stained Neurons

  Sivaguru, M., Khaw, Y. M. & Inoue, M., Aug 2019, In: Journal of Microscopy. 275, 2, p. 115-130 16 p.

  Research output: Contribution to journal › Article › peer-review

  • Staining and Labeling
  • Neurons
  • Light
  • Dendritic Spines
  • Central Nervous System Diseases

• A Conformationally Restricted Aza-BODIPY Platform for Stimulus-Responsive Probes with Enhanced Photoacoustic Properties

  Zhou, E. Y., Knox, H. J., Liu, C., Zhao, W. & Chan, J., Nov 6 2019, In: Journal of the American Chemical Society. 141, 44, p. 17601-17609 9 p.

  Research output: Contribution to journal › Article › peer-review

  • 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene
  • Photoacoustic effect
  • dye
  • Coloring Agents
  • probe

• A conjoined electron and thermal transport study of thermal degradation induced during normal operation of multigate transistors

  Mohamed, M., Aksamija, Z., Vitale, W., Hassan, F., Park, K. H. & Ravaioli, U., Apr 2014, In: IEEE Transactions on Electron Devices. 61, 4, p. 976-983 8 p., 6774450.

  Research output: Contribution to journal › Article › peer-review

  • Electron Transport
  • Phonons
  • Pyrolysis
  • Transistors
  • Hot Temperature

• A conjunctive surface-subsurface flow representation for mesoscale land surface models

  Il Choi, H., Liang, X. Z. & Kumar, P., Oct 24 2013, In: Journal of Hydrometeorology. 14, 5, p. 1421-1442 22 p.

  Research output: Contribution to journal › Article › peer-review

  • subsurface flow
  • land surface
  • common land
  • water budget
  • soil moisture

• A connected cytoskeleton network generates axonal tension in embryonic: Drosophila

  Fan, A., Joy, M. S. H. & Saif, T., Sep 21 2019, In: Lab on a chip. 19, 18, p. 3133-3139 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Axons
  • Cytoskeleton
  • Drosophila
  • Neurons
  • Stiffness

• A CONOP9 composite taxon range chart for Ordovician conodonts from Baltoscandia: a framework for biostratigraphic correlation and maximum-likelihood biodiversity analyses

  Goldman, D., Bergström, S. M., Sheets, H. D. & Pantle, C., 2014, In: GFF. 136, 2, p. 342--354

  Research output: Contribution to journal › Article › peer-review

  • conodont
  • Ordovician
  • biodiversity
  • extinction
  • outcrop

• A consensus map in cultivated hexaploid oat reveals conserved grass synteny with substantial subgenome rearrangement

  Chaffin, A. S., Huang, Y. F., Smith, S., Bekele, W. A., Babiker, E., Gnanesh, B. N., Foresman, B. J., Blanchard, S. G., Jay, J. J., Reid, R. W., Wight, C. P., Chao, S., Oliver, R., Islamovic, E., Kolb, F. L., McCartney, C., Mitchell Fetch, J. W., Beattie, A. D., Bjørnstad, Å., Michael Bonman, J. & 11 others, Langdon, T., Howarth, C. J., Brouwer, C. R., Jellen, E. N., Klos, K. E., Poland, J. A., Hsieh, T. F., Brown, R., Jackson, E., Schlueter, J. A. & Tinker, N. A., Jul 2016, In: Plant Genome. 9, 2

  Research output: Contribution to journal › Article › peer-review

  • Synteny
  • Avena
  • Poaceae
  • hexaploidy
  • Consensus

• A conservative framework for primary atomization computation and application to the study of nozzle and density ratio effects

  Le Chenadec, V. & Pitsch, H., Dec 4 2013, In: Atomization and Sprays. 23, 12, p. 1139-1165 27 p.

  Research output: Contribution to journal › Article › peer-review

  • Atomization
  • Nozzles
  • Atomizers
  • Fluids
  • Navier Stokes equations

• A conserved fertility signal despite population variation in the cuticular chemical profile of the trap-jaw ant Odontomachus brunneus

  Smith, A. A., Millar, J. G., Hanks, L. M. & Suarez, A. V., Oct 2013, In: Journal of Experimental Biology. 216, 20, p. 3917-3924 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Odontomachus brunneus
  • Ants
  • Hydrocarbons
  • ant
  • jaws

• A conserved motif liganding the [4Fe–4S] cluster in [4Fe–4S] fumarases prevents irreversible inactivation of the enzyme during hydrogen peroxide stress

  Lu, Z. & Imlay, J. A., Sep 2019, In: Redox Biology. 26, 101296.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Fumarate Hydratase
  • Hydrogen Peroxide
  • Bacteria
  • Enzymes
  • Oxidants

• A consistency condition for the vector potential in multiply-connected domains

  Epstein, C. L., Gimbutas, Z., Greengard, L., Klockner, A. & O'Neil, M., 2013, In: IEEE Transactions on Magnetics. 49, 3, p. 1072-1076 5 p., 6327672.

  Research output: Contribution to journal › Article › peer-review

  • Magnetic fields
  • Integral equations
  • Gages
  • Electric fields
  • Boundary conditions

• A constrained matrix-variate Gaussian process for transposable data

  Koyejo, O., Lee, C. & Ghosh, J., Oct 2014, In: Machine Learning. 97, 1-2, p. 103-127 25 p.

  Research output: Contribution to journal › Article › peer-review

  • Genes
  • Recommender systems
  • Ontology
  • Data structures

• A constrained maximization formulation to analyze deformation of fiber reinforced elastomeric actuators

  Singh, G. & Krishnan, G., May 16 2017, In: Smart Materials and Structures. 26, 6, 065024.

  Research output: Contribution to journal › Article › peer-review

  • elastomeric
  • actuators
  • Actuators
  • formulations
  • enclosure

• A contactless ultrasonic surface wave approach to characterize distributed cracking damage in concrete

  Ham, S., Song, H., Oelze, M. L. & Popovics, J. S., Mar 1 2017, In: Ultrasonics. 75, p. 46-57 12 p.

  Research output: Contribution to journal › Article › peer-review

  • surface waves
  • ultrasonics
  • damage
  • microcracks
  • scattering

• A content analysis of qualitative research in the journal of teaching in physical education from 1998 to 2008

  Hemphill, M. A., Richards, K. A. R., Templin, T. J. & Blankenship, B. T., Jan 1 2012, In: Journal of Teaching in Physical Education. 31, 3, p. 279-287 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Physical Education and Training
  • Qualitative Research
  • physical education
  • Teaching
  • qualitative research

• A continuing career in biocatalysis: Frances H. Arnold

  Fasan, R., Jennifer Kan, S. B. & Zhao, H., Nov 1 2019, In: ACS Catalysis. 9, 11, p. 9775-9788 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Biocatalysis
  • Enzymes
  • Biocatalysts
  • Catalysis

• A continuity-preserving and divergence-cleaning algorithm based on purely and damped hyperbolic Maxwell equations in inhomogeneous media

  Yan, S. & Jin, J. M., Apr 1 2017, In: Journal of Computational Physics. 334, p. 392-418 27 p.

  Research output: Contribution to journal › Article › peer-review

  • Cleaning
  • Maxwell equations
  • Inhomogeneous Media
  • Maxwell's equations
  • continuity

• A continuum approximation approach to competitive facility location design under facility disruption risks

  Wang, X. & Ouyang, Y., Apr 2013, In: Transportation Research Part B: Methodological. 50, p. 90-103 14 p.

  Research output: Contribution to journal › Article › peer-review

  • service provider
  • customer
  • follower
  • functionality
  • Probability density function

• A continuum approximation approach to the dynamic facility location problem in a growing market

  Wang, X., Lim, M. K. & Ouyang, Y., 2017, In: Transportation Science. 51, 1, p. 343-357 15 p.

  Research output: Contribution to journal › Article › peer-review

  • market
  • time
  • Probability density function
  • customer
  • penalty

• A controlled sensing approach to graph classification

  Ligo, J. G., Atia, G. K. & Veeravalli, V. V., Dec 15 2014, In: IEEE Transactions on Signal Processing. 62, 24, p. 6468-6480 13 p., 6936380.

  Research output: Contribution to journal › Article › peer-review

  • Composite materials
  • Testing

• A Convergent version of the max SINR algorithm for the MIMO interference channel

  Wilson, C. & Veeravalli, V., May 10 2013, In: IEEE Transactions on Wireless Communications. 12, 6, p. 2952-2961 10 p., 6512536.

  Research output: Contribution to journal › Article › peer-review

  • Interference Channel
  • Multiple-input multiple-output (MIMO)
  • Interference
  • Successive Interference Cancellation
  • Power Control

• A conversation with Estate V. Khmaladze

  Koul, H. L. & Koenker, R., 2016, In: Statistical Science. 31, 3, p. 453-464 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Statistics
  • Mathematics
  • Moscow
  • New Zealand
  • Probability Theory

• A convex formulation of traffic dynamics on transportation networks

  Li, Y., Claudel, C. G., Piccoli, B. & Work, D. B., 2017, In: SIAM Journal on Applied Mathematics. 77, 4, p. 1493-1515 23 p.

  Research output: Contribution to journal › Article › peer-review

  • Traffic Dynamics
  • Transportation Networks
  • Partial differential equations
  • Hamilton-Jacobi
  • Convex optimization

• A cooperative bayesian nonparametric framework for primary user activity monitoring in cognitive radio networks

  Saad, W., Han, Z., Poor, H. V., Basar, T. & Song, J. B., Oct 5 2012, In: IEEE Journal on Selected Areas in Communications. 30, 9, p. 1815-1822 8 p., 6311241.

  Research output: Contribution to journal › Article › peer-review

  • Cognitive radio
  • Monitoring
  • Availability

• A coordinated effort to manage soybean rust in North America: A success story in soybean disease monitoring

  Sikora, E. J., Allen, T. W., Wise, K. A., Bergstrom, G., Bradley, C. A., Bond, J., Brown-Rytlewski, D., Chilvers, M., Damicone, J., DeWolf, E., Dorrance, A., Dufault, N., Esker, P., Faske, T. R., Giesler, L., Goldberg, N., Golod, J., Gómez, I. R. G., Grau, C., Grybauskas, A. & 36 others, Franc, G., Hammerschmidt, R., Hartman, G. L., Henn, R. A., Hershman, D., Hollier, C., Isakeit, T., Isard, S., Jacobsen, B., Jardine, D., Kemerait, R., Koenning, S., Langham, M., Malvick, D., Markell, S., Marois, J. J., Monfort, S., Mueller, D., Mueller, J., Mulrooney, R., Newman, M., Osborne, L., Padgett, G. B., Ruden, B. E., Rupe, J., Schneider, R., Schwartz, H., Shaner, G., Singh, S., Stromberg, E., Sweets, L., Tenuta, A., Vaiciunas, S., Yang, X. B., Young-Kelly, H. & Zidek, J., 2014, In: Plant disease. 98, 7, p. 864-875 12 p.

  Research output: Contribution to journal › Article › peer-review

  • soybean rust
  • disease surveillance
  • soybeans
  • monitoring
  • Phakopsora pachyrhizi

• A copula-based sampling method for data-driven prognostics

  Xi, Z., Jing, R., Wang, P. & Hu, C., Dec 2014, In: Reliability Engineering and System Safety. 132, p. 72-82 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Health
  • Sampling
  • Degradation
  • Statistical Models
  • Testing

• A correlational method to concurrently measure envelope and temporal fine structure weights: Effects of age, cochlear pathology, and spectral shaping

  Fogerty, D. & Humes, L. E., Sep 2012, In: Journal of the Acoustical Society of America. 132, 3, p. 1679-1689 11 p.

  Research output: Contribution to journal › Article › peer-review

  • pathology
  • Fine Structure
  • hearing
  • Spectrality
  • Listeners

• A Correlation-Based Framework for Evaluating Postural Control Stochastic Dynamics

  Hernandez, M. E., Snider, J., Stevenson, C., Cauwenberghs, G. & Poizner, H., May 2016, In: IEEE Transactions on Neural Systems and Rehabilitation Engineering. 24, 5, p. 551-561 11 p., 7112158.

  Research output: Contribution to journal › Article › peer-review

  • Pressure
  • Stochastic Processes
  • Sensory Feedback
  • Eye
  • Random processes

• A cosmic microwave background lensing mass map and its correlation with the cosmic infrared background

  Holder, G. P., Viero, M. P., Zahn, O., Aird, K. A., Benson, B. A., Bhattacharya, S., Bleem, L. E., Bock, J., Brodwin, M., Carlstrom, J. E., Chang, C. L., Cho, H. M., Conley, A., Crawford, T. M., Crites, A. T., De Haan, T., Dobbs, M. A., Dudley, J., George, E. M., Halverson, N. W. & 37 others, Holzapfel, W. L., Hoover, S., Hou, Z., Hrubes, J. D., Keisler, R., Knox, L., Lee, A. T., Leitch, E. M., Lueker, M., Luong-Van, D., Marsden, G., Marrone, D. P., McMahon, J. J., Mehl, J., Meyer, S. S., Millea, M., Mohr, J. J., Montroy, T. E., Padin, S., Plagge, T., Pryke, C., Reichardt, C. L., Ruhl, J. E., Sayre, J. T., Schaffer, K. K., Schulz, B., Shaw, L., Shirokoff, E., Spieler, H. G., Staniszewski, Z., Stark, A. A., Story, K. T., Van Engelen, A., Vanderlinde, K., Vieira, J. D., Williamson, R. & Zemcov, M., Jul 1 2013, In: Astrophysical Journal Letters. 771, 1, L16.

  Research output: Contribution to journal › Article › peer-review

  • microwave
  • microwaves
  • wavelength
  • wavelengths
  • power spectra

• A coupled forage-grazer model predicts viability of livestock production and wildlife habitat at the regional scale

  Kowal, V. A., Jones, S. M., Keesing, F., Allan, B. F., Schieltz, J. M. & Chaplin-Kramer, R., Dec 1 2019, In: Scientific reports. 9, 1, 19957.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Livestock
  • Ecosystem
  • Ruminants
  • Cattle
  • Diet

• A Coupled Global Atmosphere-Ocean Model for Air-Sea Exchange of Mercury: Insights into Wet Deposition and Atmospheric Redox Chemistry

  Zhang, Y., Horowitz, H., Wang, J., Xie, Z., Kuss, J. & Soerensen, A. L., May 7 2019, In: Environmental Science and Technology. 53, 9, p. 5052-5061 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Oxidation-Reduction
  • wet deposition
  • Mercury
  • mercury
  • ocean

• Acoustic coefficients of P₂O₅-doped silica fiber: The strain-optic and strain-acoustic coefficients

  Law, P. C., Croteau, A. & Dragic, P. D., Apr 1 2012, In: Optical Materials Express. 2, 4, p. 391-404 14 p.

  Research output: Contribution to journal › Article › peer-review

  • phosphorus pentoxide
  • Silicon Dioxide
  • Optics
  • Silica
  • Acoustics

• Acoustic correlates for perceived effort levels in male and female acted voices

  Pietrowicz, M., Hasegawa-Johnson, M. & Karahalios, K. G., Aug 1 2017, In: Journal of the Acoustical Society of America. 142, 2, p. 792-811 20 p.

  Research output: Contribution to journal › Article › peer-review

  • Female Voice
  • Acoustics
  • emotions
  • Voice Quality
  • acoustics

• Acoustic Correlates of Emphatic Stress in Central Catalan

  Nadeu, M. & Hualde, J. I., Dec 1 2012, In: Language and speech. 55, 4, p. 517-542 26 p.

  Research output: Contribution to journal › Article › peer-review

  • Central Catalan
  • Emphatics
  • acoustics
  • Acoustics
  • Sodium Glutamate