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• Article

  A distant downstream enhancer directs essential expression of Tbx18 in urogenital tissues

  Bolt, C. C., Elso, C. M., Lu, X., Pan, F., Kispert, A. & Stubbs, L., Aug 15 2014, In: Developmental Biology. 392, 2, p. 483-493 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Homozygote
  • Genetic Enhancer Elements
  • Phenotype
  • Loss of Function Mutation
  • Inner Ear

• Allele-specific enhancer interaction at the Peg3 imprinted domain

  Kim, J., Frey, W. D., Sharma, K., Ghimire, S., Teruyama, R. & Stubbs, L., Oct 1 2019, In: PloS one. 14, 10, e0224287.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • DNA Methylation
  • Conformations
  • Animals
  • Genes
  • Brain

• A mouse mutation that dysregulates neighboring GALNT17 and AUTS2 genes is associated with phenotypes related to the human AUTS2 syndrome

  Weisner, P. A., Chen, C. Y., Sun, Y., Yoo, J., Kao, W. C., Zhang, H., Baltz, E. T., Troy, J. M. & Stubbs, L., Nov 1 2019, In: G3: Genes, Genomes, Genetics. 9, 11, p. 3891-3906 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Homozygote
  • Phenotype
  • N-Acetylgalactosaminyltransferases
  • Mutation
  • Pathology

• An extended regulatory landscape drives Tbx18 activity in a variety of prostate-associated cell lineages

  Negi, S., Bolt, C. C., Zhang, H. & Stubbs, L., Feb 15 2019, In: Developmental Biology. 446, 2, p. 180-192 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Cell Lineage
  • Chromatin
  • Prostate
  • Essential Genes
  • Ureter

• Behavioral, transcriptomic and epigenetic responses to social challenge in honey bees

  Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Cash-Ahmed, A. C., Seward, C. H., Sloofman, L., Chandrasekaran, S., Sinha, S., Stubbs, L. J. & Robinson, G. E., Jul 2017, In: Genes, Brain and Behavior. 16, 6, p. 579-591 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Bees
  • Honey
  • Epigenomics
  • Mushroom Bodies
  • Transcription Factors

• Comparative analysis of weighted gene coexpression networks in human and mouse

  Eidsaa, M., Stubbs, L. & Almaas, E., Nov 2017, In: PloS one. 12, 11, e0187611.

  Research output: Contribution to journal › Article › peer-review

  • gene regulatory networks
  • Gene Regulatory Networks
  • Genes
  • mice
  • genes

• Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge

  Saul, M. C., Blatti, C., Yang, W., Bukhari, S. A., Shpigler, H. Y., Troy, J. M., Seward, C. H., Sloofman, L., Chandrasekaran, S., Bell, A. M., Stubbs, L., Robinson, G. E., Zhao, S. D. & Sinha, S., Jan 2019, In: Genes, Brain and Behavior. 18, 1, p. e12502 e12502.

  Research output: Contribution to journal › Article › peer-review

  • Systems Analysis
  • Synaptic Transmission
  • Smegmamorpha
  • Genetic Phenomena
  • Bees

• Deep vertebrate roots for mammalian zinc finger transcription factor subfamilies

  Liu, H., Chang, L. H., Sun, Y., Lu, X. & Stubbs, L., Mar 2014, In: Genome biology and evolution. 6, 3, p. 510-525 16 p.

  Research output: Contribution to journal › Article › peer-review

  • zinc finger motif
  • Zinc Fingers
  • vertebrate
  • Vertebrates
  • zinc

• Function and evolution of C2H2 zinc finger arrays

  Stubbs, L., Sun, Y. & Caetano-Anolles, D., Jan 1 2011, In: Sub-Cellular Biochemistry. 52, p. 75-94 20 p.

  Research output: Contribution to journal › Article › peer-review

  • CYS2-HIS2 Zinc Fingers
  • Zinc
  • Transcription Factors
  • Nucleotide Motifs
  • Proteins

• Gain, loss and divergence in primate Zinc-Finger genes: A rich resource for evolution of gene regulatory differences between species

  Nowick, K., Fields, C., Gernat, T., Caetano-Anolles, D., Kholina, N. & Stubbs, L., 2011, In: PloS one. 6, 6, e21553.

  Research output: Contribution to journal › Article › peer-review

  • zinc finger motif
  • Zinc Fingers
  • Regulator Genes
  • regulator genes
  • Zinc

• Honey bee neurogenomic responses to affiliative and agonistic social interactions

  Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Corona, F., Cash-Ahmed, A. C., Seward, C. H., Chandrasekaran, S., Stubbs, L. J. & Robinson, G. E., Jan 2019, In: Genes, Brain and Behavior. 18, 1, e12509.

  Research output: Contribution to journal › Article › peer-review

  • Bees
  • Honey
  • Interpersonal Relations
  • Nursing
  • Mushroom Bodies

• Neuromolecular responses to social challenge: Common mechanisms across mouse, stickleback fish, and honey bee

  Rittschof, C. C., Bukhari, S. A., Sloofman, L. G., Troy, J. M., Caetano-Anollés, D., Cash-Ahmed, A., Kent, M., Lu, X., Sanogo, Y. O., Weisner, P. A., Zhang, H., Bell, A. M., Ma, J., Sinha, S., Robinson, G. E. & Stubbs, L., Dec 16 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 50, p. 17929-17934 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Smegmamorpha
  • Bees
  • Honey
  • Fishes
  • Energy Metabolism

• Roles of progesterone receptor A and B isoforms during human endometrial decidualization

  Kaya, H. S., Hantak, A. M., Stubbs, L. J., Taylor, R. N., Bagchi, I. C. & Bagchi, M. K., Jun 1 2015, In: Molecular Endocrinology. 29, 6, p. 882-895 14 p.

  Research output: Contribution to journal › Article › peer-review

  • progesterone receptor A
  • progesterone receptor B
  • Protein Isoforms
  • Progesterone Receptors
  • Stromal Cells

• Tbx18 regulates the differentiation of periductal smooth muscle stroma and the maintenance of epithelial integrity in the prostate

  Bolt, C. C., Negi, S., Guimarães-Camboa, N., Zhang, H., Troy, J. M., Lu, X., Kispert, A., Evans, S. M. & Stubbs, L., Apr 2016, In: PloS one. 11, 4, e0154413.

  Research output: Contribution to journal › Article › peer-review

  • Muscle
  • Smooth Muscle
  • sinuses
  • Prostate
  • Maintenance

• Temporal dynamics of neurogenomic plasticity in response to social interactions in male threespined sticklebacks

  Bukhari, S. A., Saul, M. C., Seward, C. H., Zhang, H., Bensky, M., James, N., Zhao, S. D., Chandrasekaran, S., Stubbs, L. & Bell, A. M., Jul 2017, In: PLoS genetics. 13, 7, e1006840.

  Research output: Contribution to journal › Article › peer-review

  • Smegmamorpha
  • Gasterosteidae
  • Interpersonal Relations
  • social behavior
  • plasticity

• Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice

  Saul, M. C., Seward, C. H., Troy, J. M., Zhang, H., Sloofman, L. G., Lu, X., Weisner, P. A., Caetano-Anolles, D., Sun, H., Zhao, S. D., Chandrasekaran, S., Sinha, S. & Stubbs, L., Jun 2017, In: Genome Research. 27, 6, p. 959-972 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Drive
  • Chromatin
  • Amygdala
  • Frontal Lobe
  • Hypothalamus

• ZSCAN5B and primate-specific paralogs bind RNA polymerase III genes and extra-TFIIIC (ETC) sites to modulate mitotic progression

  Sun, Y., Zhang, H., Kazemian, M., Troy, J. M., Seward, C., Lu, X. & Stubbs, L., 2016, In: Oncotarget. 7, 45, p. 72571-72592 22 p.

  Research output: Contribution to journal › Article › peer-review

  • transcription factor TFIIIC
  • RNA Polymerase III
  • Primates
  • Transfer RNA
  • Genes
• Comment/debate

  A Hox-Embedded Long Noncoding RNA: Is It All Hot Air?

  Selleri, L., Bartolomei, M. S., Bickmore, W. A., He, L., Stubbs, L., Reik, W. & Barsh, G. S., Dec 2016, In: PLoS genetics. 12, 12, e1006485.

  Research output: Contribution to journal › Comment/debate › peer-review