Search concepts
|
Selected Filters |
- 1 - 50 out of 74 results
- Export search results
Search results
-
Article
Accurate assignment of significance to neuropeptide identifications using monte carlo K-permuted decoy databases
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 17 2014, In: PloS one. 9, 10, e111112.Research output: Contribution to journal › Article › peer-review
-
A diverse family of novel peptide toxins from an unusual cone snail, Conus californicus
Gilly, W. F., Richmond, T. A., Duda, T. F., Elliger, C., Lebaric, Z., Schulz, J., Bingham, J. P. & Sweedler, J. V., Jan 2011, In: Journal of Experimental Biology. 214, 1, p. 147-161 15 p.Research output: Contribution to journal › Article › peer-review
-
Analysis of endogenous nucleotides by single cell capillary electrophoresis-mass spectrometry
Liu, J. X., Aerts, J. T., Rubakhin, S. S., Zhang, X. X. & Sweedler, J. V., Oct 15 2014, In: Analyst. 139, 22, p. 5835-5842 8 p.Research output: Contribution to journal › Article › peer-review
-
A novel pyridoxal 5'-phosphate-dependent amino acid racemase in the aplysia californica central nervous system
Wang, L., Ota, N., Romanova, E. V. & Sweedler, J. V., Apr 15 2011, In: Journal of Biological Chemistry. 286, 15, p. 13765-13774 10 p.Research output: Contribution to journal › Article › peer-review
-
Biomolecular imaging with a C60-SIMS/MALDI dual ion source hybrid mass spectrometer: Instrumentation, matrix enhancement, and single cell analysis
Lanni, E. J., Dunham, S. J. B., Nemes, P., Rubakhin, S. S. & Sweedler, J. V., Nov 2014, In: Journal of the American Society for Mass Spectrometry. 25, 11, p. 1897-1907 11 p.Research output: Contribution to journal › Article › peer-review
-
Chronic morphine alters the presynaptic protein profile: Identification of novel molecular targets using proteomics and network analysis
Abul-Husn, N. S., Annangudi, S. P., Ma'ayan, A., Ramos-Ortolaza, D. L., Stockton, S. D., Gomes, I., Sweedler, J. V. & Devi, L. A., Oct 17 2011, In: PloS one. 6, 10, e25535.Research output: Contribution to journal › Article › peer-review
-
Classification of Large Cellular Populations and Discovery of Rare Cells Using Single Cell Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry
Ong, T. H., Kissick, D. J., Jansson, E. T., Comi, T. J., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Jul 21 2015, In: Analytical chemistry. 87, 14, p. 7036-7042 7 p.Research output: Contribution to journal › Article › peer-review
-
Collection of peptides released from single neurons with particle-embedded monolithic capillaries followed by detection with matrix-assisted laser desorption/ionization mass spectrometry
Fan, Y., Rubakhin, S. & Sweedler, J. V., Dec 15 2011, In: Analytical chemistry. 83, 24, p. 9557-9563 7 p.Research output: Contribution to journal › Article › peer-review
-
Comparing label-free quantitative peptidomics approaches to characterize diurnal variation of peptides in the rat suprachiasmatic nucleus
Southey, B. R., Lee, J. E., Zamdborg, L., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Jan 7 2014, In: Analytical chemistry. 86, 1, p. 443-452 10 p.Research output: Contribution to journal › Article › peer-review
-
Correction: Spatial organization of Pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy
Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 6058-6060 3 p.Research output: Contribution to journal › Article › peer-review
-
Correlated imaging with C60-SIMS and confocal raman microscopy: Visualization of cell-scale molecular distributions in bacterial biofilms
Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Dunham, S. J. B., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 30 2014, In: Analytical chemistry. 86, 21, p. 10885-10891 7 p.Research output: Contribution to journal › Article › peer-review
-
D-Alanine in the islets of Langerhans of rat pancreas
Ota, N., Rubakhin, S. S. & Sweedler, J. V., May 2 2014, In: Biochemical and Biophysical Research Communications. 447, 2, p. 328-333 6 p.Research output: Contribution to journal › Article › peer-review
-
Differential peptidomics assessment of strain and age differences in mice in response to acute cocaine administration
Romanova, E. V., Rubakhin, S. S., Ossyra, J. R., Zombeck, J. A., Nosek, M. R., Sweedler, J. V. & Rhodes, J. S., Dec 1 2015, In: Journal of Neurochemistry. 135, 5, p. 1038-1048 11 p.Research output: Contribution to journal › Article › peer-review
-
Distinguishing endogenous d-amino acid-containing neuropeptides in individual neurons using tandem mass spectrometry
Bai, L., Romanova, E. V. & Sweedler, J. V., Apr 1 2011, In: Analytical Chemistry. 83, 7, p. 2794-2800 7 p.Research output: Contribution to journal › Article › peer-review
-
Diversity of conotoxin types from Conus californicus reflects a diversity of prey types and a novel evolutionary history
Elliger, C. A., Richmond, T. A., Lebaric, Z. N., Pierce, N. T., Sweedler, J. V. & Gilly, W. F., Feb 2011, In: Toxicon. 57, 2, p. 311-322 12 p.Research output: Contribution to journal › Article › peer-review
-
Effects of exercise and dietary epigallocatechin gallate and β-alanine on skeletal muscle in aged mice
Pence, B. D., Gibbons, T. E., Bhattacharya, T. K., Mach, H., Ossyra, J. M., Petr, G., Martin, S. A., Wang, L., Rubakhin, S. S., Sweedler, J. V., McCusker, R. H., Kelley, K. W., Rhodes, J. S., Johnson, R. W. & Woods, J. A., Oct 26 2015, In: Applied Physiology, Nutrition and Metabolism. 41, 2, p. 181-190 10 p.Research output: Contribution to journal › Article › peer-review
-
Fibrinogen α-chain-derived peptide is upregulated in hippocampus of rats exposed to acute morphine injection and spontaneous alternation testing
Maki, A. E., Morris, K. A., Catherman, K., Chen, X., Hatcher, N. G., Gold, P. E. & Sweedler, J. V., Jun 2014, In: Pharmacology Research and Perspectives. 2, 3, e00037.Research output: Contribution to journal › Article › peer-review
-
Identification of best indicators of peptide-spectrum match using a permutation resampling approach
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 30 2014, In: Journal of Bioinformatics and Computational Biology. 12, 5, 1440001.Research output: Contribution to journal › Article › peer-review
-
Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways
Cho, K., Evans, B. S., Wood, B. M. K., Kumar, R., Erb, T. J., Warlick, B. P., Gerlt, J. A. & Sweedler, J. V., Jun 1 2015, In: Metabolomics. 11, 3, p. 503-517 15 p.Research output: Contribution to journal › Article › peer-review
-
MALDI-guided SIMS: Multiscale imaging of metabolites in bacterial biofilms
Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Aerts, J. T., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 1 2014, In: Analytical chemistry. 86, 18, p. 9139-9145 7 p.Research output: Contribution to journal › Article › peer-review
-
MALDI mass spectrometry imaging of neuronal cell cultures
Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., May 2011, In: Journal of the American Society for Mass Spectrometry. 22, 5, p. 828-836 9 p.Research output: Contribution to journal › Article › peer-review
-
Mass spectrometry imaging and GC-MS profiling of the mammalian peripheral sensory-motor circuit
Rubakhin, S. S., Ulanov, A. & Sweedler, J. V., Jun 1 2015, In: Journal of the American Society for Mass Spectrometry. 26, 6, p. 958-966 9 p.Research output: Contribution to journal › Article › peer-review
-
Metabolic differentiation of neuronal phenotypes by single-cell capillary electrophoresis-electrospray ionization-mass spectrometry
Nemes, P., Knolhoff, A. M., Rubakhin, S. S. & Sweedler, J. V., Sep 1 2011, In: Analytical chemistry. 83, 17, p. 6810-6817 8 p.Research output: Contribution to journal › Article › peer-review
-
Mice deficient in endothelin-converting enzyme-2 exhibit abnormal responses to morphine and altered peptide levels in the spinal cord
Miller, L. K., Hou, X., Rodriguiz, R. M., Gagnidze, K., Sweedler, J. V., Wetsel, W. C. & Devi, L. A., Dec 2011, In: Journal of Neurochemistry. 119, 5, p. 1074-1085 12 p.Research output: Contribution to journal › Article › peer-review
-
Microbeam-coupled capillary electrophoresis
Garty, G., Ehsan, M. U., Buonanno, M., Yang, Z., Sweedler, J. V. & Brenner, D. J., Sep 1 2015, In: Radiation Protection Dosimetry. 166, 1-4, p. 188-191 4 p., ncv148.Research output: Contribution to journal › Article › peer-review
-
Molecular organization of drosophila neuroendocrine cells by dimmed
Park, D., Hadžić, T., Yin, P., Rusch, J., Abruzzi, K., Rosbash, M., Skeath, J. B., Panda, S., Sweedler, J. V. & Taghert, P. H., Sep 27 2011, In: Current Biology. 21, 18, p. 1515-1524 10 p.Research output: Contribution to journal › Article › peer-review
-
Multimodal chemical imaging of molecular messengers in emerging Pseudomonas aeruginosa bacterial communities
Baig, N. F., Dunham, S. J. B., Morales-Soto, N., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 7 2015, In: Analyst. 140, 19, p. 6544-6552 9 p.Research output: Contribution to journal › Article › peer-review
-
Nanopipet-based liquid-liquid interface probes for the electrochemical detection of acetylcholine, tryptamine, and serotonin via ionic transfer
Colombo, M. L., Sweedler, J. V. & Shen, M., May 19 2015, In: Analytical chemistry. 87, 10, p. 5095-5100 6 p.Research output: Contribution to journal › Article › peer-review
-
Patch clamp electrophysiology and capillary electrophoresis-mass spectrometry metabolomics for single cell characterization
Aerts, J. T., Louis, K. R., Crandall, S. R., Govindaiah, G., Cox, C. L. & Sweedler, J. V., 2014, In: Analytical chemistry. 86, 6, p. 3203-3208 6 p.Research output: Contribution to journal › Article › peer-review
-
Peptidomics and Secretomics of the Mammalian Peripheral Sensory-Motor System
Tillmaand, E. G., Yang, N., Kindt, C. A. C., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Dec 1 2015, In: Journal of the American Society for Mass Spectrometry. 26, 12, p. 2051-2061 11 p.Research output: Contribution to journal › Article › peer-review
-
Prediction and biochemical demonstration of a catabolic pathway for the osmoprotectant proline betaine
Kumar, R., Zhao, S., Vetting, M. W., Wood, B. M. K., Sakai, A., Cho, K., Solbiati, J., Almo, S. C., Sweedler, J. V., Jacobson, M. P., Gerlt, J. A. & Cronan, J. E., Feb 11 2014, In: mBio. 5, 1, e00933-13.Research output: Contribution to journal › Article › peer-review
-
Probing the production of amidated peptides following genetic and dietary copper manipulations
Yin, P., Bousquet-Moore, D., Annangudi, S. P., Southey, B. R., Mains, R. E., Eipper, B. A. & Sweedler, J. V., Dec 16 2011, In: PloS one. 6, 12, e28679.Research output: Contribution to journal › Article › peer-review
-
Profiling metabolites and peptides in single cells
Rubakhin, S. S., Romanova, E. V., Nemes, P. & Sweedler, J. V., Apr 2011, In: Nature Methods. 8, 4, p. S20-S29Research output: Contribution to journal › Article › peer-review
-
Rapid mitogenic regulation of the mTORC1 Inhibitor, DEPTOR, by phosphatidic acid
Yoon, M. S., Rosenberger, C. L., Wu, C., Truong, N., Sweedler, J. V. & Chen, J., May 7 2015, In: Molecular cell. 58, 3, p. 549-556 8 p.Research output: Contribution to journal › Article › peer-review
-
Small molecule analysis and imaging of fatty acids in the zebra finch song system using time-of-flight-secondary ion mass spectrometry
Amaya, K. R., Sweedler, J. V. & Clayton, D. F., Aug 2011, In: Journal of Neurochemistry. 118, 4, p. 499-511 13 p.Research output: Contribution to journal › Article › peer-review
-
Spatial organization of pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy
Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 5700-5708 9 p.Research output: Contribution to journal › Article › peer-review
-
Stretched tissue mounting for MALDI mass spectrometry imaging
Tucker, K. R., Lanni, E. J., Serebryannyy, L. A., Rubakhin, S. & Sweedler, J. V., Dec 1 2011, In: Analytical chemistry. 83, 23, p. 9181-9185 5 p.Research output: Contribution to journal › Article › peer-review
-
The ctenophore genome and the evolutionary origins of neural systems
Moroz, L. L., Kocot, K. M., Citarella, M. R., Dosung, S., Norekian, T. P., Povolotskaya, I. S., Grigorenko, A. P., Dailey, C., Berezikov, E., Buckley, K. M., Ptitsyn, A., Reshetov, D., Mukherjee, K., Moroz, T. P., Bobkova, Y., Yu, F., Kapitonov, V. V., Jurka, J., Bobkov, Y. V., Swore, J. J. & 16 others, , 2014, In: Nature. 510, 7503, p. 109-114 6 p.Research output: Contribution to journal › Article › peer-review
-
The modified-bead stretched sample method: Development and application to MALDI-MS imaging of protein localization in the spinal cord
Tucker, K. R., Serebryannyy, L. A., Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., 2011, In: Chemical Science. 2, 4, p. 785-795 11 p.Research output: Contribution to journal › Article › peer-review
-
The Notch effector gene Hes1 regulates migration of hypothalamic neurons, neuropeptide content and axon targeting to the pituitary
Aujla, P. K., Bora, A., Monahan, P., Sweedler, J. V. & Raetzman, L. T., May 1 2011, In: Developmental Biology. 353, 1, p. 61-71 11 p.Research output: Contribution to journal › Article › peer-review
-
Chapter
Neuropeptidomics: Mass spectrometry-based qualitative and quantitative analysis
Yin, P., Hou, X., Romanova, E. V. & Sweedler, J. V., 2011, Neuropeptides: Methods and Protocols. Merighi, A. (ed.). p. 223-236 14 p. (Methods in Molecular Biology; vol. 789).Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
Neuropeptidomics
Sweedler, J. V., Xie, F. & Bora, A., Sep 23 2011, Protein and Peptide Mass Spectrometry in Drug Discovery. John Wiley and Sons, p. 393-433 41 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
Neuropeptidomics of the mammalian brain
Xie, F., Romanova, E. V. & Sweedler, J. V., Jun 3 2011, Neuroproteomics. Li, K. W. (ed.). p. 229-242 14 p. (Neuromethods; vol. 57).Research output: Chapter in Book/Report/Conference proceeding › Chapter
-
Conference contribution
Comparison of tandem mass spectrometry search methods to identify neuropeptides
Akhtar, M. N., Southey, B. R., Porter, K. I., Sweedler, J. V. & Rodriguez-Zas, S. L., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 982-984 3 p. 6112530. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
-
Evaluation of significance level assignment of database search programs using monte carlo permutation approach
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 103-107 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
-
Integration of sequence and functional information to identify and annotate neuropeptides in the pig genome
Porter, K. I., Southey, B. R., Akhtar, M. N., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 988-990 3 p. 6112532. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
-
Model of ion intensity from tandem mass spectra for improved peptide identification and simulation
Fazal, Z., Southey, B. R., Sadeque, A., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 994-996 3 p. 6112534. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
-
The mechanical sensitivity of vesicle dynamics in in vivo and in vitro neurons
Ahmed, W. W., Li, T. C., Rubakhin, S., Chiba, A., Sweedler, J. V. & Saif, M. T. A., Nov 23 2011, Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011. p. 436-439 4 p. (Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011; vol. 3).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
-
Understanding the impact of fractionation and dynamic exclusion on proteomics
Zavala, C., Nixon, S., Southey, B. R., Wu, C., Romanova, E. V., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 93-96 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
-
Using microfluidics and mass spectrometry to study peptide release in neurons
Croushore, C. A., Lee, C. Y., Zhong, M. & Sweedler, J. V., Dec 1 2011, 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011. p. 858-860 3 p. (15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011; vol. 2).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution