Find Research Outputs — University of Illinois at Urbana-Champaign

Article

Accelerating Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Imaging Using a Subspace Approach

Xie, Y. R., Castro, D. C., Lam, F. & Sweedler, J. V., Nov 4 2020, In: Journal of the American Society for Mass Spectrometry. 31, 11, p. 2338-2347 10 p.

Research output: Contribution to journal › Article › peer-review

Accurate assignment of significance to neuropeptide identifications using monte carlo K-permuted decoy databases

Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 17 2014, In: PloS one. 9, 10, e111112.

Research output: Contribution to journal › Article › peer-review

A D-amino acid-containing neuropeptide discovery funnel

Livnat, I., Tai, H. C., Jansson, E. T., Bai, L., Romanova, E. V., Chen, T. T., Yu, K., Chen, S. A., Zhang, Y., Wang, Z. Y., Liu, D. D., Weiss, K. R., Jing, J. & Sweedler, J. V., 2016, In: Analytical Chemistry. 88, 23, p. 11868-11876 9 p.

Research output: Contribution to journal › Article › peer-review

A diverse family of novel peptide toxins from an unusual cone snail, Conus californicus

Gilly, W. F., Richmond, T. A., Duda, T. F., Elliger, C., Lebaric, Z., Schulz, J., Bingham, J. P. & Sweedler, J. V., Jan 2011, In: Journal of Experimental Biology. 214, 1, p. 147-161 15 p.

Research output: Contribution to journal › Article › peer-review

A high spatiotemporal study of somatic exocytosis with scanning electrochemical microscopy and nanoITIES electrodes

Welle, T. M., Alanis, K., Colombo, M. L., Sweedler, J. V. & Shen, M., 2018, In: Chemical Science. 9, 22, p. 4937-4941 5 p.

Research output: Contribution to journal › Article › peer-review

A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids

Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J. V. & Zhao, H., Jul 1 2020, In: Biotechnology and bioengineering. 117, 7, p. 2131-2138 8 p.

Research output: Contribution to journal › Article › peer-review

Analysis of endogenous nucleotides by single cell capillary electrophoresis-mass spectrometry

Liu, J. X., Aerts, J. T., Rubakhin, S. S., Zhang, X. X. & Sweedler, J. V., Oct 15 2014, In: Analyst. 139, 22, p. 5835-5842 8 p.

Research output: Contribution to journal › Article › peer-review

A neuron-in-capillary platform for facile collection and mass spectrometric characterization of a secreted neuropeptide

Lee, C. Y., Fan, Y., Rubakhin, S. S., Yoon, S. & Sweedler, J. V., Jun 1 2016, In: Scientific reports. 6, 26940.

Research output: Contribution to journal › Article › peer-review

A novel pyridoxal 5'-phosphate-dependent amino acid racemase in the aplysia californica central nervous system

Wang, L., Ota, N., Romanova, E. V. & Sweedler, J. V., Apr 15 2011, In: Journal of Biological Chemistry. 286, 15, p. 13765-13774 10 p.

Research output: Contribution to journal › Article › peer-review

A one-step matrix application method for MALDI mass spectrometry imaging of bacterial colony biofilms

Li, B., Comi, T. J., Si, T., Dunham, S. J. B. & Sweedler, J. V., Nov 1 2016, In: Journal of Mass Spectrometry. 51, 11, p. 1030-1035 6 p.

Research output: Contribution to journal › Article › peer-review

Aplysia locomotion: Network and behavioral actions of GdFFD, a D-amino acid-containing neuropeptide

Yang, C. Y., Yu, K., Wang, Y., Chen, S. A., Liu, D. D., Wang, Z. Y., Su, Y. N., Yang, S. Z., Chen, T. T., Livnat, I., Vilim, F. S., Cropper, E. C., Weiss, K. R., Sweedler, J. V. & Jing, J., Jan 1 2016, In: PloS one. 11, 1, e0147335.

Research output: Contribution to journal › Article › peer-review

Automated method for analysis of tryptophan and tyrosine metabolites using capillary electrophoresis with native fluorescence detection

Dailey, C. A., Garnier, N., Rubakhin, S. S. & Sweedler, J. V., Mar 2013, In: Analytical and bioanalytical chemistry. 405, 8, p. 2451-2459 9 p.

Research output: Contribution to journal › Article › peer-review

A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms

Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., King, T. L., Amaya, K. R., Arnett, C. M. & Sweedler, J. V., Jun 5 2018, In: Analytical Chemistry. 90, 11, p. 6725-6734 10 p.

Research output: Contribution to journal › Article › peer-review

Biomolecular imaging with a C₆₀-SIMS/MALDI dual ion source hybrid mass spectrometer: Instrumentation, matrix enhancement, and single cell analysis

Lanni, E. J., Dunham, S. J. B., Nemes, P., Rubakhin, S. S. & Sweedler, J. V., Nov 2014, In: Journal of the American Society for Mass Spectrometry. 25, 11, p. 1897-1907 11 p.

Research output: Contribution to journal › Article › peer-review

Biphasic Liquid Microjunction Extraction for Profiling Neuronal RNA Modifications by Liquid Chromatography-Tandem Mass Spectrometry

Clark, K. D., Philip, M. C., Tan, Y. & Sweedler, J. V., Sep 15 2020, In: Analytical Chemistry. 92, 18, p. 12647-12655 9 p.

Research output: Contribution to journal › Article › peer-review

Characterization of bacillus subtilis colony biofilms via mass spectrometry and fluorescence imaging

Si, T., Li, B., Zhang, K., Xu, Y., Zhao, H. & Sweedler, J. V., Jun 3 2016, In: Journal of Proteome Research. 15, 6, p. 1955-1962 8 p.

Research output: Contribution to journal › Article › peer-review

Characterization of GdFFD, a D-amino acid-containing neuropeptide that functions as an extrinsic modulator of the Aplysia feeding circuit

Bai, L., Livnat, I., Romanova, E. V., Alexeeva, V., Yau, P. M., Vilim, F. S., Weiss, K. R., Jing, J. & Sweedler, J. V., Nov 15 2013, In: Journal of Biological Chemistry. 288, 46, p. 32837-32851 15 p.

Research output: Contribution to journal › Article › peer-review

Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies

Southey, B. R., Rodriguez-Zas, S. L., Rhodes, J. S. & Sweedler, J. V., 2020, In: PloS one. 15, 3, e0228562.

Research output: Contribution to journal › Article › peer-review

Open Access

Chronic morphine alters the presynaptic protein profile: Identification of novel molecular targets using proteomics and network analysis

Abul-Husn, N. S., Annangudi, S. P., Ma'ayan, A., Ramos-Ortolaza, D. L., Stockton, S. D., Gomes, I., Sweedler, J. V. & Devi, L. A., Oct 17 2011, In: PloS one. 6, 10, e25535.

Research output: Contribution to journal › Article › peer-review

Classification of Large Cellular Populations and Discovery of Rare Cells Using Single Cell Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry

Ong, T. H., Kissick, D. J., Jansson, E. T., Comi, T. J., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Jul 21 2015, In: Analytical chemistry. 87, 14, p. 7036-7042 7 p.

Research output: Contribution to journal › Article › peer-review

Collection of peptides released from single neurons with particle-embedded monolithic capillaries followed by detection with matrix-assisted laser desorption/ionization mass spectrometry

Fan, Y., Rubakhin, S. & Sweedler, J. V., Dec 15 2011, In: Analytical chemistry. 83, 24, p. 9557-9563 7 p.

Research output: Contribution to journal › Article › peer-review

Combining small-volume metabolomic and transcriptomic approaches for assessing brain chemistry

Knolhoff, A. M., Nautiyal, K. M., Nemes, P., Kalachikov, S., Morozova, I., Silver, R. & Sweedler, J. V., Mar 19 2013, In: Analytical chemistry. 85, 6, p. 3136-3143 8 p.

Research output: Contribution to journal › Article › peer-review

Comparing label-free quantitative peptidomics approaches to characterize diurnal variation of peptides in the rat suprachiasmatic nucleus

Southey, B. R., Lee, J. E., Zamdborg, L., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Jan 7 2014, In: Analytical chemistry. 86, 1, p. 443-452 10 p.

Research output: Contribution to journal › Article › peer-review

Conformational investigation of the structure-activity relationship of GdFFD and its analogues on an achatin-like neuropeptide receptor of: Aplysia californica involved in the feeding circuit

Do, T. D., Checco, J. W., Tro, M., Shea, J. E., Bowers, M. T. & Sweedler, J. V., 2018, In: Physical Chemistry Chemical Physics. 20, 34, p. 22047-22057 11 p.

Research output: Contribution to journal › Article › peer-review

Correction: Spatial organization of Pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy

Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 6058-6060 3 p.

Research output: Contribution to journal › Article › peer-review

Correlated imaging with C₆₀-SIMS and confocal raman microscopy: Visualization of cell-scale molecular distributions in bacterial biofilms

Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Dunham, S. J. B., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 30 2014, In: Analytical chemistry. 86, 21, p. 10885-10891 7 p.

Research output: Contribution to journal › Article › peer-review

D-Alanine in the islets of Langerhans of rat pancreas

Ota, N., Rubakhin, S. S. & Sweedler, J. V., May 2 2014, In: Biochemical and Biophysical Research Communications. 447, 2, p. 328-333 6 p.

Research output: Contribution to journal › Article › peer-review

Differential peptidomics assessment of strain and age differences in mice in response to acute cocaine administration

Romanova, E. V., Rubakhin, S. S., Ossyra, J. R., Zombeck, J. A., Nosek, M. R., Sweedler, J. V. & Rhodes, J. S., Dec 1 2015, In: Journal of Neurochemistry. 135, 5, p. 1038-1048 11 p.

Research output: Contribution to journal › Article › peer-review

Differential post-translational amino acid isomerization found among neuropeptides in aplysia californica

Mast, D. H., Checco, J. W. & Sweedler, J. V., Jan 17 2020, In: ACS chemical biology. 15, 1, p. 272-281 10 p.

Research output: Contribution to journal › Article › peer-review

Discovery of new enzymes and metabolic pathways by using structure and genome context

Zhao, S., Kumar, R., Sakai, A., Vetting, M. W., Wood, B. M. K., Brown, S., Bonanno, J. B., Hillerich, B. S., Seidel, R. D., Babbitt, P. C., Almo, S. C., Sweedler, J. V., Gerlt, J. A., Cronan, J. E. & Jacobson, M. P., 2013, In: Nature. 502, 7473, p. 698-702 5 p.

Research output: Contribution to journal › Article › peer-review

Disruption of microglia histone acetylation and protein pathways in mice exhibiting inflammation-associated depression-like symptoms

Rodriguez-Zas, S. L., Wu, C., Southey, B. R., O'Connor, J. C., Nixon, S. E., Garcia, R., Zavala, C., Lawson, M., McCusker, R. H., Romanova, E. V., Sweedler, J. V., Kelley, K. W. & Dantzer, R., Nov 2018, In: Psychoneuroendocrinology. 97, p. 47-58 12 p.

Research output: Contribution to journal › Article › peer-review

Distinguishing endogenous d-amino acid-containing neuropeptides in individual neurons using tandem mass spectrometry

Bai, L., Romanova, E. V. & Sweedler, J. V., Apr 1 2011, In: Analytical Chemistry. 83, 7, p. 2794-2800 7 p.

Research output: Contribution to journal › Article › peer-review

Diversity of conotoxin types from Conus californicus reflects a diversity of prey types and a novel evolutionary history

Elliger, C. A., Richmond, T. A., Lebaric, Z. N., Pierce, N. T., Sweedler, J. V. & Gilly, W. F., Feb 2011, In: Toxicon. 57, 2, p. 311-322 12 p.

Research output: Contribution to journal › Article › peer-review

Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry—Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS

Li, L., Andrén, P. E. & Sweedler, J. V., May 1 2018, In: Journal of the American Society for Mass Spectrometry. 29, 5, p. 801-806 6 p.

Research output: Contribution to journal › Article › peer-review

Effects of exercise and dietary epigallocatechin gallate and β-alanine on skeletal muscle in aged mice

Pence, B. D., Gibbons, T. E., Bhattacharya, T. K., Mach, H., Ossyra, J. M., Petr, G., Martin, S. A., Wang, L., Rubakhin, S. S., Sweedler, J. V., McCusker, R. H., Kelley, K. W., Rhodes, J. S., Johnson, R. W. & Woods, J. A., Oct 26 2015, In: Applied Physiology, Nutrition and Metabolism. 41, 2, p. 181-190 10 p.

Research output: Contribution to journal › Article › peer-review

Enhanced single-cell metabolomics by capillary electrophoresis electrospray ionization-mass spectrometry with field amplified sample injection

Liao, H. W., Rubakhin, S., Philip, M. C. & Sweedler, J. V., Jun 29 2020, In: Analytica Chimica Acta. 1118, p. 36-43 8 p.

Research output: Contribution to journal › Article › peer-review

Fibrinogen α-chain-derived peptide is upregulated in hippocampus of rats exposed to acute morphine injection and spontaneous alternation testing

Maki, A. E., Morris, K. A., Catherman, K., Chen, X., Hatcher, N. G., Gold, P. E. & Sweedler, J. V., Jun 2014, In: Pharmacology Research and Perspectives. 2, 3, e00037.

Research output: Contribution to journal › Article › peer-review

Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock

Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. U., Aug 15 2018, In: ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.

Research output: Contribution to journal › Article › peer-review

Gene network dysregulation in the trigeminal ganglia and nucleus accumbens of a model of chronic migraine-associated hyperalgesia

Jeong, H., Moye, L. S., Southey, B. R., Hernandez, A. G., Dripps, I., Romanova, E. V., Rubakhin, S. S., Sweedler, J. V., Pradhan, A. A. & Rodriguez-Zas, S. L., Dec 18 2018, In: Frontiers in Systems Neuroscience. 12, 63.

Research output: Contribution to journal › Article › peer-review

Interrogation of spatial metabolome of Ginkgo biloba with high-resolution matrix-assisted laser desorption/ionization and laser desorption/ionization mass spectrometry imaging

Li, B., Neumann, E. K., Ge, J., Gao, W., Yang, H., Li, P. & Sweedler, J. V., Nov 2018, In: Plant Cell and Environment. 41, 11, p. 2693-2703 11 p.

Research output: Contribution to journal › Article › peer-review

Laminar stream of detergents for subcellular neurite damage in a microfluidic device: A simple tool for the study of neuroregeneration

Lee, C. Y., Romanova, E. V. & Sweedler, J. V., Jun 2013, In: Journal of Neural Engineering. 10, 3, 036020.

Research output: Contribution to journal › Article › peer-review

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