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  3-D biofabrication using stereolithography for biology and medicine.

  Bajaj, P., Chan, V., Jeong, J. H., Zorlutuna, P., Kong, H. & Bashir, R., 2012, In: Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference. p. 6805-6808 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Medicine
  • Electrophoresis
  • Tissue engineering
  • Scaffolds

• A liposome-based ion release impedance sensor for biological detection

  Damhorst, G. L., Smith, C. E., Salm, E. M., Sobieraj, M. M., Ni, H., Kong, H. & Bashir, R., Oct 2013, In: Biomedical microdevices. 15, 5, p. 895-905 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Liposomes
  • Electric Impedance
  • Biomolecules
  • Ions
  • Pathogens

• A microfabricated electrical differential counter for the selective enumeration of CD4+ T lymphocytes

  Watkins, N. N., Sridhar, S., Cheng, X., Chen, G. D., Toner, M., Rodriguez, W. & Bashir, R., Apr 21 2011, In: Lab on a chip. 11, 8, p. 1437-1447 11 p.

  Research output: Contribution to journal › Article › peer-review

  • T-cells
  • T-Lymphocytes
  • Leukocytes
  • Immobilized Antibodies
  • Cell Count

• Biodegradable thin metal foils and spin-on glass materials for transient electronics

  Kang, S. K., Hwang, S. W., Yu, S., Seo, J. H., Corbin, E. A., Shin, J., Wie, D. S., Bashir, R., Ma, Z. & Rogers, J. A., Mar 25 2015, In: Advanced Functional Materials. 25, 12, p. 1789-1797 9 p.

  Research output: Contribution to journal › Article › peer-review

  • metal foils
  • Metal foil
  • Glass
  • encapsulating
  • glass

• Bionanoscience in health and medicine

  Bashir, R., May 2012, In: Proceedings of the IEEE. 100, 5, p. 1015-1016 2 p., 6183039.

  Research output: Contribution to journal › Article › peer-review

  • Nanotechnology
  • Medicine
  • Health
  • Biological systems
  • DNA

• Biophysical properties of human breast cancer cells measured using silicon MEMS resonators and atomic force microscopy

  Corbin, E. A., Kong, F., Lim, C. T., King, W. P. & Bashir, R., Feb 7 2015, In: Lab on a chip. 15, 3, p. 839-847 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Micro-Electrical-Mechanical Systems
  • Atomic force microscopy
  • Atomic Force Microscopy
  • Silicon
  • Cells

• Cardiac myocytes' dynamic contractile behavior differs depending on heart segment

  De Souza, E. J., Ahmed, W., Chan, V., Bashir, R. & Saif, T., Feb 2013, In: Biotechnology and bioengineering. 110, 2, p. 628-636 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Cardiac Myocytes
  • Muscle Cells
  • Heart
  • Video Microscopy
  • Microscopic examination

• Cardiomyocyte Imaging Using Real-Time Spatial Light Interference Microscopy (SLIM)

  Bhaduri, B., Wickland, D., Wang, R., Chan, V., Bashir, R. & Popescu, G., Feb 15 2013, In: PloS one. 8, 2, e56930.

  Research output: Contribution to journal › Article › peer-review

  • Interference Microscopy
  • Light interference
  • cardiomyocytes
  • Liquid Crystals
  • Microscopic examination

• Characterization of mass and swelling of hydrogel microstructures using MEMS resonant mass sensor arrays

  Millet, L. J., Corbin, E. A., Free, R., Park, K., Kong, H., King, W. P. & Bashir, R., Aug 20 2012, In: Small. 8, 16, p. 2555-2562 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Sensor arrays
  • Swelling
  • MEMS

• Control of nanoscale environment to improve stability of immobilized proteins on diamond surfaces

  Radadia, A. D., Stavis, C. J., Carr, R., Zeng, H., King, W. P., Carlisle, J. A., Aksimentiev, A., Hamers, R. J. & Bashir, R., Mar 22 2011, In: Advanced Functional Materials. 21, 6, p. 1040-1050 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Immobilized Proteins
  • Diamond
  • Diamonds
  • Proteins
  • proteins

• Coupled heterogeneous nanowire-nanoplate planar transistor sensors for giant (>10 V/pH) nernst response

  Go, J., Nair, P. R., Reddy, B., Dorvel, B., Bashir, R. & Alam, M. A., Jul 24 2012, In: ACS Nano. 6, 7, p. 5972-5979 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanowires
  • Transistors
  • nanowires
  • transistors
  • Ion sensitive field effect transistors

• Detection and quantification of methylation in DNA using solid-state nanopores

  Shim, J., Humphreys, G. I., Venkatesan, B. M., Munz, J. M., Zou, X., Sathe, C., Schulten, K., Kosari, F., Nardulli, A. M., Vasmatzis, G. & Bashir, R., 2013, In: Scientific reports. 3, 1389.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • DNA Methylation
  • Methylation
  • Epigenomics
  • 5-Methylcytosine

• Development of miniaturized walking biological machines

  Chan, V., Park, K., Collens, M. B., Kong, H., Saif, T. A. & Bashir, R., 2012, In: Scientific reports. 2, 857.

  Research output: Contribution to journal › Article › peer-review

  • Locomotion
  • Cardiac Myocytes
  • Walking
  • Leg
  • Friction

• Direct DNA sequencing using nanopore sensors

  Bashir, R., Apr 1 2013, In: Genetic Engineering and Biotechnology News. 33, 7, p. 34-35+45

  Research output: Contribution to journal › Article › peer-review

• Directed cell growth and alignment on protein-patterned 3D hydrogels with stereolithography: In this tissue engineering application, PEG-based hydrogels with different fibronectin patterns were fabricated and the influence of the protein patterns on shape and direction of seeded cells was studied

  Chan, V., Collens, M. B., Jeong, J. H., Park, K., Kong, H. & Bashir, R., Sep 1 2012, In: Virtual and Physical Prototyping. 7, 3, p. 219-228 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Fibronectin
  • Hydrogel
  • Tissue Engineering
  • Cell growth

• Effect of biointerfacing linker chemistries on the sensitivity of silicon nanowires for protein detection

  Dorvel, B., Reddy, B. & Bashir, R., Oct 15 2013, In: Analytical chemistry. 85, 20, p. 9493-9500 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanowires
  • Silicon
  • Oxides
  • Proteins
  • Polyethylene glycols

• Electrical detection of dsDNA and polymerase chain reaction amplification

  Salm, E., Liu, Y. S., Marchwiany, D., Morisette, D., He, Y., Bhunia, A. K. & Bashir, R., Dec 2011, In: Biomedical microdevices. 13, 6, p. 973-982 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Polymerase chain reaction
  • DNA
  • Amplification
  • Pathogens
  • Deionized water

• Electrochemistry at the edge of a single graphene layer in a nanopore

  Banerjee, S., Shim, J., Rivera, J., Jin, X., Estrada, D., Solovyeva, V., You, X., Pak, J., Pop, E., Aluru, N. & Bashir, R., Jan 22 2013, In: ACS Nano. 7, 1, p. 834-843 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Electrochemistry
  • Graphite
  • electrochemistry
  • Graphene

• Electron beam induced local crystallization of HfO₂ nanopores for biosensing applications

  Shim, J., Rivera, J. A. & Bashir, R., Nov 21 2013, In: Nanoscale. 5, 22, p. 10887-10893 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Crystallization
  • Electron beams
  • Graphite
  • Membranes

• Electronic desalting for controlling the ionic environment in droplet-based biosensing platforms

  Swaminathan, V. V., Dak, P., Reddy, B., Salm, E., Duarte-Guevara, C., Zhong, Y., Fischer, A., Liu, Y. S., Alam, M. A. & Bashir, R., Feb 2 2015, In: Applied Physics Letters. 106, 5, 053105.

  Research output: Contribution to journal › Article › peer-review

  • salts
  • platforms
  • electronics
  • platinum black
  • electrodes

• Enabling microscale and nanoscale approaches for bioengineered cardiac tissue

  Chan, V., Raman, R., Cvetkovic, C. & Bashir, R., Mar 26 2013, In: ACS Nano. 7, 3, p. 1830-1837 8 p.

  Research output: Contribution to journal › Article › peer-review

  • microbalances
  • Tissue
  • Carbon Nanotubes
  • Methacrylates
  • gelatins

• Engineering as a new frontier for translational medicine

  Chien, S., Bashir, R., Nerem, R. M. & Pettigrew, R., Apr 1 2015, In: Science Translational Medicine. 7, 281, 281fs13.

  Research output: Contribution to journal › Article › peer-review

  • Translational Medical Research
  • Medicine
  • Delivery of Health Care
  • Therapeutics

• Enhanced sub-micron colloidal particle separation with interdigitated microelectrode arrays using mixed AC/DC dielectrophoretic scheme

  Swaminathan, V. V., Shannon, M. A. & Bashir, R., Jan 1 2015, In: Biomedical microdevices. 17, 2

  Research output: Contribution to journal › Article › peer-review

  • Microelectrodes
  • Electrodes
  • 1-(2-(dodecyloxy)ethyl)pyrrolidine hydrochloride
  • DNA Viruses
  • Static Electricity

• Fabrication and characterization of optogenetic, multi-strip cardiac muscles

  Chan, V., Neal, D. M., Uzel, S. G. M., Kim, H., Bashir, R. & Asada, H. H., May 21 2015, In: Lab on a chip. 15, 10, p. 2258-2268 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Muscle
  • Myocardium
  • Fabrication
  • Tissue engineering

• Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction

  Lee, M. K., Rich, M. H., Shkumatov, A., Jeong, J. H., Boppart, M. D., Bashir, R., Gillette, M. U., Lee, J. & Kong, H., Jan 1 2015, In: Advanced Healthcare Materials. 4, 2, p. 195-201 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Glaciers
  • Ice Cover
  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Microchannels

• Graphene-Based Platform for Infrared Near-Field Nanospectroscopy of Water and Biological Materials in an Aqueous Environment

  Khatib, O., Wood, J. D., McLeod, A. S., Goldflam, M. D., Wagner, M., Damhorst, G. L., Koepke, J. C., Doidge, G. P., Rangarajan, A., Bashir, R., Pop, E., Lyding, J. W., Thiemens, M. H., Keilmann, F. & Basov, D. N., Aug 25 2015, In: ACS Nano. 9, 8, p. 7968-7975 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Graphite
  • Biological materials
  • Graphene
  • Near field scanning optical microscopy
  • viruses

• High-k dielectric Al₂O₃ nanowire and nanoplate field effect sensors for improved pH sensing

  Reddy, B., Dorvel, B. R., Go, J., Nair, P. R., Elibol, O. H., Credo, G. M., Daniels, J. S., Chow, E. K. C., Su, X., Varma, M., Alam, M. A. & Bashir, R., Apr 2011, In: Biomedical microdevices. 13, 2, p. 335-344 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanowires
  • High-k dielectric
  • Aluminum oxide
  • Gate dielectrics
  • Equipment and Supplies

• How far cardiac cells can see each other mechanically

  Tang, X., Bajaj, P., Bashir, R. & Saif, T. A., Jul 7 2011, In: Soft Matter. 7, 13, p. 6151-6158 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Substrates
  • cells
  • Stiffness
  • Continuum mechanics
  • Tissue

• Hydrodynamic loading and viscous damping of patterned perforations on microfabricated resonant structures

  Park, K., Shim, J., Solovyeva, V., Corbin, E., Banerjee, S. & Bashir, R., Apr 9 2012, In: Applied Physics Letters. 100, 15, 154107.

  Research output: Contribution to journal › Article › peer-review

  • viscous damping
  • perforation
  • hydrodynamics
  • penetration
  • perforating

• In situ self-folding assembly of a multi-walled hydrogel tube for uniaxial sustained molecular release

  Baek, K., Jeong, J. H., Shkumatov, A., Bashir, R. & Kong, H., Oct 18 2013, In: Advanced Materials. 25, 39, p. 5568-5573 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Gels
  • poly(ethylene glycol)diacrylate
  • Intercellular Signaling Peptides and Proteins

• Label-free electrical detection of pyrophosphate generated from DNA polymerase reactions on field-effect devices

  Credo, G. M., Su, X., Wu, K., Elibol, O. H., Liu, D. J., Reddy, B., Tsai, T. W., Dorvel, B. R., Daniels, J. S., Bashir, R. & Varma, M., Mar 21 2012, In: Analyst. 137, 6, p. 1351-1362 12 p.

  Research output: Contribution to journal › Article › peer-review

  • diphosphoric acid
  • DNA
  • Labels
  • Chelating Agents
  • sensor

• Label-free imaging of cell attachment with photonic crystal enhanced microscopy

  Lidstone, E. A., Chaudhery, V., Kohl, A., Chan, V., Wolf-Jensen, T., Schook, L. B., Bashir, R. & Cunningham, B. T., Sep 21 2011, In: Analyst. 136, 18, p. 3608-3615 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Optics and Photonics
  • Photonic crystals
  • Microscopic examination
  • Labels
  • microscopy

• Label-free intracellular transport measured by spatial light interference microscopy

  Wang, Z., Millet, L., Chan, V., Ding, H., Gillette, M. U., Bashir, R. & Popescu, G., Feb 2011, In: Journal of biomedical optics. 16, 2, 026019.

  Research output: Contribution to journal › Article › peer-review

  • Light interference
  • organelles
  • Microscopic examination
  • Photobleaching
  • Labels

• Lipid bilayer coated Al₂O₃ nanopore sensors: Towards a hybrid biological solid-state nanopore

  Venkatesan, B. M., Polans, J., Comer, J., Sridhar, S., Wendell, D., Aksimentiev, A. & Bashir, R., Aug 1 2011, In: Biomedical microdevices. 13, 4, p. 671-682 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Lipid bilayers
  • Nanopores
  • Lipid Bilayers
  • Aluminum oxide
  • Sensors

• "Living" microvascular stamp for patterning of functional neovessels; Orchestrated control of matrix property and geometry

  Jeong, J. H., Chan, V., Cha, C., Zorlutuna, P., Dyck, C., Hsia, K. J., Bashir, R. & Kong, H., Jan 3 2012, In: Advanced Materials. 24, 1, p. 58-63 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • Angiogenesis Inducing Agents
  • Geometry
  • Polyethylene Glycol Dimethacrylate Hydrogel

• Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

  Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In: Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Shape optimization
  • Muscle
  • Tissue
  • Skeletal Muscle
  • Muscles

• Microfluidic CD4⁺ and CD8⁺ T lymphocyte counters for point-of-care HIV diagnostics using whole blood

  Watkins, N. N., Hassan, U., Damhorst, G., Ni, H., Vaid, A., Rodriguez, W. & Bashir, R., Dec 4 2013, In: Science Translational Medicine. 5, 214, 214ra170.

  Research output: Contribution to journal › Article › peer-review

  • Microfluidics
  • Point-of-Care Systems
  • HIV
  • T-Lymphocytes
  • Equipment and Supplies

• Microfluidic multifunctional probe array dielectrophoretic force spectroscopy with wide loading rates

  Park, I. S., Eom, K., Son, J., Chang, W. J., Park, K., Kwon, T., Yoon, D. S., Bashir, R. & Lee, S. W., Oct 23 2012, In: ACS Nano. 6, 10, p. 8665-8673 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Molecular interactions
  • loading rate
  • Spectroscopy
  • Microfluidics
  • Molecular mechanics

• Micromechanical properties of hydrogels measured with MEMS resonant sensors

  Corbin, E. A., Millet, L. J., Pikul, J. H., Johnson, C. L., Georgiadis, J. G., King, W. P. & Bashir, R., Apr 1 2013, In: Biomedical microdevices. 15, 2, p. 311-319 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • MEMS
  • poly(ethylene glycol)diacrylate
  • Electrohydrodynamics
  • Drug delivery

• Multi-material bio-fabrication of hydrogel cantilevers and actuators with stereolithography

  Chan, V., Jeong, J. H., Bajaj, P., Collens, M., Saif, T., Kong, H. & Bashir, R., Jan 7 2012, In: Lab on a chip. 12, 1, p. 88-98 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Hydrogels
  • poly(ethylene glycol)diacrylate
  • Polyethylene glycols
  • Polyethylene Glycol Dimethacrylate Hydrogel

• Nanopore-based assay for detection of methylation in double-stranded DNA fragments

  Shim, J., Kim, Y., Humphreys, G. I., Nardulli, A. M., Kosari, F., Vasmatzis, G., Taylor, W. R., Ahlquist, D. A., Myong, S. & Bashir, R., Jan 27 2015, In: ACS Nano. 9, 1, p. 290-300 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Methylation
  • methylation
  • Nanopores
  • Assays
  • DNA

• Nanotextured superhydrophobic electrodes enable detection of attomolar-scale DNA concentration within a droplet by non-faradaic impedance spectroscopy

  Ebrahimi, A., Dak, P., Salm, E., Dash, S., Garimella, S. V., Bashir, R. & Alam, M. A., Nov 7 2013, In: Lab on a chip. 13, 21, p. 4248-4256 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Dielectric Spectroscopy
  • Spectroscopy
  • DNA
  • Electric Impedance
  • Electrodes

• On a chip

  Watkins, N., Irimia, D., Toner, M. & Bashir, R., Nov 2011, In: IEEE Pulse. 2, 6, p. 19-27 9 p., 6088930.

  Research output: Contribution to journal › Article › peer-review

  • Emergency rooms
  • Ambulances
  • MEMS
  • Health

• On-chip magnetic separation and encapsulation of cells in droplets

  Chen, A., Byvank, T., Chang, W. J., Bharde, A., Vieira, G., Miller, B. L., Chalmers, J. J., Bashir, R. & Sooryakumar, R., Mar 21 2013, In: Lab on a chip. 13, 6, p. 1172-1181 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Magnetic separation
  • Cell Separation
  • Encapsulation
  • Sorting
  • Cells

• On-chip metal/polypyrrole quasi-reference electrodes for robust ISFET operation

  Duarte-Guevara, C., Swaminathan, V. V., Burgess, M., Reddy, B., Salm, E., Liu, Y. S., Rodriguez-Lopez, J. & Bashir, R., May 21 2015, In: Analyst. 140, 10, p. 3630-3641 12 p.

  Research output: Contribution to journal › Article › peer-review

  • polypyrrole
  • Ion sensitive field effect transistors
  • Polypyrroles
  • Ion-Selective Electrodes
  • Metals

• On-chip parallel detection of foodborne pathogens using loop-mediated isothermal amplification

  Duarte, C., Salm, E., Dorvel, B., Reddy, B. & Bashir, R., Oct 1 2013, In: Biomedical microdevices. 15, 5, p. 821-830 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Pathogens
  • Silicon
  • Amplification
  • Nucleic Acids
  • Nucleic acids

• Optical measurement of cycle-dependent cell growth

  Mir, M., Wang, Z., Shen, Z., Bednarz, M., Bashir, R., Golding, I., Prasanth, S. G. & Popescu, G., Aug 9 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 32, p. 13124-13129 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Cell Cycle
  • Growth
  • Interference Microscopy
  • Cell Size
  • Microscopy

• Optomechanical measurement of the stiffness of single adherent cells

  Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In: Lab on a chip. 15, 17, p. 3460-3464 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Substrates
  • Stiffness
  • Mechanical properties
  • Phase shift
  • Lasers

• Pattern analysis and spatial distribution of neurons in culture

  Millet, L. J., Collens, M. B., Perry, G. L. W. & Bashir, R., Dec 1 2011, In: Integrative Biology. 3, 12, p. 1167-1178 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Spatial Analysis
  • Spatial distribution
  • Neurons
  • Neurology
  • Dendrites (metallography)

• Patterned Three-Dimensional Encapsulation of Embryonic Stem Cells using Dielectrophoresis and Stereolithography

  Bajaj, P., Marchwiany, D., Duarte, C. & Bashir, R., Mar 2013, In: Advanced Healthcare Materials. 2, 3, p. 450-458 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Stem cells
  • Hydrogels
  • Electrophoresis
  • Encapsulation