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• Article

  3D printing enables separation of orthogonal functions within a hydrogel particle

  Raman, R., Clay, N. E., Sen, S., Melhem, M., Qin, E., Kong, H. & Bashir, R., Jun 2016, In: Biomedical microdevices. 18, 3, 49.

  Research output: Contribution to journal › Article › peer-review

  • Orthogonal functions
  • Three-Dimensional Printing
  • Hydrogels
  • Iron oxides
  • Polyethylene glycols

• A liposome-based ion release impedance sensor for biological detection

  Damhorst, G. L., Smith, C. E., Salm, E. M., Sobieraj, M. M., Ni, H., Kong, H. & Bashir, R., Oct 2013, In: Biomedical microdevices. 15, 5, p. 895-905 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Liposomes
  • Electric Impedance
  • Biomolecules
  • Ions
  • Pathogens

• A nanoscale Ti/GaAs metal-semiconductor hybrid sensor for room temperature light detection

  Newaz, A. K. M., Chang, W. J., Wallace, K. D., Edge, L. C., Wickline, S. A., Bashir, R., Gilbertson, A. M., Cohen, L. F. & Solin, S. A., Aug 23 2010, In: Applied Physics Letters. 97, 8, 082105.

  Research output: Contribution to journal › Article › peer-review

  • sensors
  • shunts
  • room temperature
  • dynamic response
  • metals

• Biaxial Dielectrophoresis Force Spectroscopy: A Stoichiometric Approach for Examining Intermolecular Weak Binding Interactions

  Park, I. S., Kwak, T. J., Lee, G., Son, M., Choi, J. W., Choi, S., Nam, K., Lee, S. Y., Chang, W. J., Eom, K., Yoon, D. S., Lee, S., Bashir, R. & Lee, S. W., Apr 26 2016, In: ACS Nano. 10, 4, p. 4011-4019 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Electrophoresis
  • Spectroscopy
  • loading rate
  • pulling
  • spectroscopy

• Cardiac myocytes' dynamic contractile behavior differs depending on heart segment

  De Souza, E. J., Ahmed, W., Chan, V., Bashir, R. & Saif, T., Feb 2013, In: Biotechnology and bioengineering. 110, 2, p. 628-636 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Cardiac Myocytes
  • Muscle Cells
  • Heart
  • Video Microscopy
  • Microscopic examination

• Cardiomyocyte Imaging Using Real-Time Spatial Light Interference Microscopy (SLIM)

  Bhaduri, B., Wickland, D., Wang, R., Chan, V., Bashir, R. & Popescu, G., Feb 15 2013, In: PloS one. 8, 2, e56930.

  Research output: Contribution to journal › Article › peer-review

  • Interference Microscopy
  • Light interference
  • cardiomyocytes
  • Liquid Crystals
  • Microscopic examination

• Design and integration of a problem-based biofabrication course into an undergraduate biomedical engineering curriculum

  Raman, R., Mitchell, M., Perez-Pinera, P., Bashir, R. & DeStefano, L., Sep 21 2016, In: Journal of Biological Engineering. 10, 1, 10.

  Research output: Contribution to journal › Article › peer-review

  • Biomedical Engineering
  • Biomedical engineering
  • Curricula
  • Curriculum
  • Students

• Detection and quantification of methylation in DNA using solid-state nanopores

  Shim, J., Humphreys, G. I., Venkatesan, B. M., Munz, J. M., Zou, X., Sathe, C., Schulten, K., Kosari, F., Nardulli, A. M., Vasmatzis, G. & Bashir, R., 2013, In: Scientific reports. 3, 1389.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • DNA Methylation
  • Methylation
  • Epigenomics
  • 5-Methylcytosine

• Detection of silver ions using dielectrophoretic tweezers-based force spectroscopy

  Choi, S., Lee, G., Park, I. S., Son, M., Kim, W., Lee, H., Lee, S. Y., Na, S., Yoon, D. S., Bashir, R., Park, J. & Lee, S. W., Nov 15 2016, In: Analytical Chemistry. 88, 22, p. 10867-10875 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Polynucleotides
  • Spectroscopy
  • Silver
  • Metal ions
  • Heavy ions

• Direct characterization of hydrodynamic loading on a microelectromechanical systems microstructure

  Mehrnezhad, A., Bashir, R. & Park, K., Mar 14 2016, In: Applied Physics Letters. 108, 11, 114101.

  Research output: Contribution to journal › Article › peer-review

  • microelectromechanical systems
  • hydrodynamics
  • microstructure
  • characterization
  • viscous fluids

• Direct DNA sequencing using nanopore sensors

  Bashir, R., Apr 1 2013, In: Genetic Engineering and Biotechnology News. 33, 7, p. 34-35+45

  Research output: Contribution to journal › Article › peer-review

• DNA sensing using nanocrystalline surface-enhanced Al₂O ₃ nanopore sensors

  Venkatesan, B. M., Shah, A. B., Zuo, J. M. & Bashir, R., Apr 23 2010, In: Advanced Functional Materials. 20, 8, p. 1266-1275 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • DNA
  • deoxyribonucleic acid
  • sensors
  • Surface charge

• Dynamic mechanical measurement of the viscoelasticity of single adherent cells

  Corbin, E. A., Adeniba, O. O., Ewoldt, R. H. & Bashir, R., Feb 29 2016, In: Applied Physics Letters. 108, 9, 093701.

  Research output: Contribution to journal › Article › peer-review

  • mechanical measurement
  • viscoelasticity
  • cells
  • sensors
  • microelectromechanical systems

• Effect of biointerfacing linker chemistries on the sensitivity of silicon nanowires for protein detection

  Dorvel, B., Reddy, B. & Bashir, R., Oct 15 2013, In: Analytical Chemistry. 85, 20, p. 9493-9500 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanowires
  • Silicon
  • Oxides
  • Proteins
  • Polyethylene glycols

• Electrochemistry at the edge of a single graphene layer in a nanopore

  Banerjee, S., Shim, J., Rivera, J., Jin, X., Estrada, D., Solovyeva, V., You, X., Pak, J., Pop, E., Aluru, N. & Bashir, R., Jan 22 2013, In: ACS Nano. 7, 1, p. 834-843 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Electrochemistry
  • Graphite
  • electrochemistry
  • Graphene

• Electron beam induced local crystallization of HfO₂ nanopores for biosensing applications

  Shim, J., Rivera, J. A. & Bashir, R., Nov 21 2013, In: Nanoscale. 5, 22, p. 10887-10893 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Crystallization
  • Electron beams
  • Graphite
  • Membranes

• Enabling microscale and nanoscale approaches for bioengineered cardiac tissue

  Chan, V., Raman, R., Cvetkovic, C. & Bashir, R., Mar 26 2013, In: ACS Nano. 7, 3, p. 1830-1837 8 p.

  Research output: Contribution to journal › Article › peer-review

  • microbalances
  • Tissue
  • Carbon Nanotubes
  • Methacrylates
  • gelatins

• Engineering geometrical 3-dimensional untethered in vitro neural tissue mimic

  Pagan-Diaz, G. J., Ramos-Cruz, K. P., Sam, R., Kandel, M. E., Aydin, O., Saif, T. M. A., Popescu, G. & Bashir, R., Dec 17 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 51, p. 25932-25940 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Biomedical Research
  • In Vitro Techniques
  • Therapeutic Human Experimentation
  • Human Embryonic Stem Cells
  • Embryonic Stem Cells

• Fluidic measurement of electric field sensitivity of Ti-GaAs Schottky junction gated field effect biosensors

  Chang, W. J., Suk, H. J., Newaz, A. K. M., Wallace, K. D., Wickline, S. A., Solin, S. A. & Bashir, R., Oct 2010, In: Biomedical microdevices. 12, 5, p. 849-854 6 p.

  Research output: Contribution to journal › Article › peer-review

  • gallium arsenide
  • Biosensing Techniques
  • Biosensors
  • Fluidics
  • Semiconductors

• High-Resolution Projection Microstereolithography for Patterning of Neovasculature

  Raman, R., Bhaduri, B., Mir, M., Shkumatov, A., Lee, M. K., Popescu, G., Kong, H. & Bashir, R., Mar 9 2016, In: Advanced Healthcare Materials. 5, 5, p. 610-619 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Tissue engineering
  • Assays
  • Immunosorbents
  • Tissue

• In situ self-folding assembly of a multi-walled hydrogel tube for uniaxial sustained molecular release

  Baek, K., Jeong, J. H., Shkumatov, A., Bashir, R. & Kong, H., Oct 18 2013, In: Advanced Materials. 25, 39, p. 5568-5573 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Gels
  • poly(ethylene glycol)diacrylate
  • Intercellular Signaling Peptides and Proteins

• Localized Dielectric Loss Heating in Dielectrophoresis Devices

  Kwak, T. J., Hossen, I., Bashir, R., Chang, W. J. & Lee, C. H., Dec 1 2019, In: Scientific reports. 9, 1, 18977.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Heating
  • Temperature
  • Equipment and Supplies
  • Electrodes
  • Hot Temperature

• Long-Term Cryopreservation and Revival of Tissue-Engineered Skeletal Muscle

  Grant, L., Raman, R., Cvetkovic, C., Ferrall-Fairbanks, M. C., Pagan-Diaz, G. J., Hadley, P., Ko, E., Platt, M. O. & Bashir, R., Jul 1 2019, In: Tissue Engineering - Part A. 25, 13-14, p. 1023-1036 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Cryopreservation
  • Muscle
  • Tissue
  • Skeletal Muscle
  • Freezing

• Magnetophoretic-based microfluidic device for DNA Concentration

  Shim, S., Shim, J., Taylor, W. R., Kosari, F., Vasmatzis, G., Ahlquist, D. A. & Bashir, R., Apr 1 2016, In: Biomedical microdevices. 18, 2, p. 1-8 8 p., 28.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Microfluidics
  • DNA
  • Nanofluidics
  • Nucleic acids

• Matrix Topography Regulates Synaptic Transmission at the Neuromuscular Junction

  Ko, E., Yu, S. J., Pagan-Diaz, G. J., Mahmassani, Z., Boppart, M. D., Im, S. G., Bashir, R. & Kong, H., Mar 20 2019, In: Advanced Science. 6, 6, 1801521.

  Research output: Contribution to journal › Article › peer-review

  • Neuromuscular Junction
  • Topography
  • Skeletal Muscle Fibers
  • Synaptic Transmission
  • topography

• Measurement of adherent cell mass and growth

  Park, K., Millet, L. J., Kim, N., Li, H., Jin, X., Popescu, G., Aluru, N. R., Hsia, K. J. & Bashir, R., Nov 30 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 48, p. 20691-20696 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Growth
  • Micro-Electrical-Mechanical Systems
  • Cell Cycle
  • Elastic Modulus
  • Tissue Engineering

• Microfluidic CD4⁺ and CD8⁺ T lymphocyte counters for point-of-care HIV diagnostics using whole blood

  Watkins, N. N., Hassan, U., Damhorst, G., Ni, H., Vaid, A., Rodriguez, W. & Bashir, R., Dec 4 2013, In: Science Translational Medicine. 5, 214, 214ra170.

  Research output: Contribution to journal › Article › peer-review

  • Microfluidics
  • Point-of-Care Systems
  • HIV
  • T-Lymphocytes
  • Equipment and Supplies

• Microfluidic differential immunocapture biochip for specific leukocyte counting

  Hassan, U., Watkins, N. N., Reddy, B., Damhorst, G. & Bashir, R., Apr 1 2016, In: Nature Protocols. 11, 4, p. 714-726 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Biochips
  • Biosensors
  • Microfluidics
  • Leukocytes
  • Biosensing Techniques

• Micromechanical properties of hydrogels measured with MEMS resonant sensors

  Corbin, E. A., Millet, L. J., Pikul, J. H., Johnson, C. L., Georgiadis, J. G., King, W. P. & Bashir, R., Apr 1 2013, In: Biomedical microdevices. 15, 2, p. 311-319 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • MEMS
  • poly(ethylene glycol)diacrylate
  • Electrohydrodynamics
  • Drug delivery

• Modeling and Analysis of Intercalant Effects on Circular DNA Conformation

  Krueger, E., Shim, J., Fathizadeh, A., Chang, A. N., Subei, B., Yocham, K. M., Davis, P. H., Graugnard, E., Khalili-Araghi, F., Bashir, R., Estrada, D. & Fologea, D., Sep 27 2016, In: ACS Nano. 10, 9, p. 8910-8917 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Circular DNA
  • Conformations
  • DNA
  • deoxyribonucleic acid
  • Nanopores

• Monolayer MoS ₂ Nanoribbon Transistors Fabricated by Scanning Probe Lithography

  Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., Van Der Zande, A. M. & King, W. P., Mar 13 2019, In: Nano letters. 19, 3, p. 2092-2098 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanoribbons
  • Carbon Nanotubes
  • Monolayers
  • Lithography
  • Transistors

• Nanotextured superhydrophobic electrodes enable detection of attomolar-scale DNA concentration within a droplet by non-faradaic impedance spectroscopy

  Ebrahimi, A., Dak, P., Salm, E., Dash, S., Garimella, S. V., Bashir, R. & Alam, M. A., Nov 7 2013, In: Lab on a chip. 13, 21, p. 4248-4256 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Dielectric Spectroscopy
  • Spectroscopy
  • DNA
  • Electric Impedance
  • Electrodes

• Neuromuscular actuation of biohybrid motile bots

  Aydin, O., Zhang, X., Nuethong, S., Pagan-Diaz, G. J., Bashir, R., Gazzola, M. & Saif, M. T. A., Oct 1 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 40, p. 19841-19847 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Muscles
  • Locomotion
  • Motor Neurons
  • Optogenetics
  • Myoblasts

• On-chip electrical detection of parallel loop-mediated isothermal amplification with DG-BioFETs for the detection of foodborne bacterial pathogens

  Duarte-Guevara, C., Swaminathan, V. V., Reddy, B., Huang, J. C., Liu, Y. S. & Bashir, R., Jan 1 2016, In: RSC Advances. 6, 106, p. 103872-103887 16 p.

  Research output: Contribution to journal › Article › peer-review

  • Pathogens
  • Amplification
  • Assays
  • Gold
  • Nucleic acids

• On-chip magnetic separation and encapsulation of cells in droplets

  Chen, A., Byvank, T., Chang, W. J., Bharde, A., Vieira, G., Miller, B. L., Chalmers, J. J., Bashir, R. & Sooryakumar, R., Mar 21 2013, In: Lab on a chip. 13, 6, p. 1172-1181 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Magnetic separation
  • Cell Separation
  • Encapsulation
  • Sorting
  • Cells

• On-chip parallel detection of foodborne pathogens using loop-mediated isothermal amplification

  Duarte, C., Salm, E., Dorvel, B., Reddy, B. & Bashir, R., Oct 1 2013, In: Biomedical microdevices. 15, 5, p. 821-830 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Pathogens
  • Silicon
  • Amplification
  • Nucleic Acids
  • Nucleic acids

• On-chip PMA labeling of foodborne pathogenic bacteria for viable qPCR and qLAMP detection

  Duarte-Guevara, P., Duarte-Guevara, C., Ornob, A. & Bashir, R., Aug 1 2016, In: Microfluidics and Nanofluidics. 20, 8, 114.

  Research output: Contribution to journal › Article › peer-review

  • propidium monoazide
  • Bacteria
  • bacteria
  • marking
  • Labeling

• Optogenetic skeletal muscle-powered adaptive biological machines

  Raman, R., Cvetkovic, C., Uzel, S. G. M., Platt, R. J., Sengupta, P., Kamm, R. D. & Bashir, R., Mar 29 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 13, p. 3497-3502 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Bioengineering
  • Skeleton
  • Locomotion
  • Skeletal Muscle

• Patterned Three-Dimensional Encapsulation of Embryonic Stem Cells using Dielectrophoresis and Stereolithography

  Bajaj, P., Marchwiany, D., Duarte, C. & Bashir, R., Mar 2013, In: Advanced Healthcare Materials. 2, 3, p. 450-458 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Stem cells
  • Hydrogels
  • Electrophoresis
  • Encapsulation

• Piezoresistive microcantilevers from ultrananocrystalline diamond

  Privorotskaya, N. L., Zeng, H., Carlisle, J. A., Bashir, R. & King, W. P., Oct 1 2010, In: Journal of Microelectromechanical Systems. 19, 5, p. 1234-1242 9 p., 5567124.

  Research output: Contribution to journal › Article › peer-review

  • Diamonds
  • Temperature
  • Boron
  • Microsystems
  • Electric properties

• Rapid thermal lysis of cells using silicon-diamond microcantilever heaters

  Privorotskaya, N., Liu, Y. S., Lee, J., Zeng, H., Carlisle, J. A., Radadia, A., Millet, L., Bashir, R. & King, W. P., 2010, In: Lab on a chip. 10, 9, p. 1135-1141 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Diamond
  • Silicon
  • Diamonds
  • Fibroblasts
  • Hot Temperature

• Smartphone-imaged microfluidic biochip for measuring CD64 expression from whole blood

  Ghonge, T., Ceylan Koydemir, H., Valera, E., Berger, J., Garcia, C., Nawar, N., Tiao, J., Damhorst, G. L., Ganguli, A., Hassan, U., Ozcan, A. & Bashir, R., Jul 7 2019, In: Analyst. 144, 13, p. 3925-3935 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Flow cytometry
  • Biochips
  • Smartphone
  • Microfluidics
  • flow cytometry

• Stiffness of the substrate influences the phenotype of embryonic chicken cardiac myocytes

  Bajaj, P., Tang, X., Saif, T. A. & Bashir, R., Dec 15 2010, In: Journal of Biomedical Materials Research - Part A. 95, 4, p. 1261-1269 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Tissue culture
  • Polyacrylates
  • Substrates
  • Stiffness
  • Adhesion

• Tailoring the dependency between rigidity and water uptake of a microfabricated hydrogel with the conformational rigidity of a polymer cross-linker

  Schmidt, J. J., Jeong, J. H., Chan, V., Cha, C., Baek, K., Lai, M. H., Bashir, R. & Kong, H., May 13 2013, In: Biomacromolecules. 14, 5, p. 1361-1369 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Rigidity
  • Polymers
  • Methacrylates

• Three-dimensional photopatterning of hydrogels using stereolithography for long-term cell encapsulation

  Chan, V., Zorlutuna, P., Jeong, J. H., Kong, H. & Bashir, R., Aug 21 2010, In: Lab on a chip. 10, 16, p. 2062-2070 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Hydrogels
  • Encapsulation
  • Polyethylene glycols
  • poly(ethylene glycol)diacrylate

• Ultra-localized single cell electroporation using silicon nanowires

  Jokilaakso, N., Salm, E., Chen, A., Millet, L., Guevara, C. D., Dorvel, B., Reddy, B., Karlstrom, A. E., Chen, Y., Ji, H., Sooryakumar, R. & Bashir, R., Feb 7 2013, In: Lab on a chip. 13, 3, p. 336-339 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanowires
  • Electroporation
  • Silicon
  • Cells
  • Developmental Biology

• Ultralocalized thermal reactions in subnanoliter droplets-in-air

  Salm, E., Guevara, C. D., Dak, P., Dorvel, B. R., Reddy, B., Alam, M. A. & Bashir, R., Feb 26 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3310-3315 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Air
  • Nucleic Acid Denaturation
  • Hot Temperature
  • Temperature
  • Silicon

• Vapor-phase deposition of monofunctional alkoxysilanes for sub-nanometer-level biointerfacing on silicon oxide surfaces

  Dorvel, B., Block, I., Reddy, B., Mathias, P., Clare, S. E., Cunningham, B., Bergstrom, D. E. & Bashir, R., Jan 8 2010, In: Advanced Functional Materials. 20, 1, p. 87-95 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Silanes
  • Silicon oxides
  • Monolayers
  • silanes
  • silicon oxides
• Conference contribution

  3D fabrication of biological machines

  Chan, V., Kong, H. J. & Bashir, R., Oct 31 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 314-317 4 p. 6609500. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Biomaterials
  • Cells
  • Fabrication
  • Biocompatible Materials
  • Cell Count

• Beating the Nernst limit of 59mV/pH with double-gated nano-scale field-effect transistors and its applications to ultra-sensitive DNA biosensors

  Go, J., Nair, P. R., Reddy, B., Dorvel, B., Bashir, R. & Alam, M. A., Dec 1 2010, 2010 IEEE International Electron Devices Meeting, IEDM 2010. p. 8.7.1-8.7.4 5703325. (Technical Digest - International Electron Devices Meeting, IEDM).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Biomolecules
  • Biosensors
  • bioinstrumentation
  • Field effect transistors
  • DNA