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Article
Accurate assignment of significance to neuropeptide identifications using monte carlo K-permuted decoy databases
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 17 2014, In: PloS one. 9, 10, e111112.Research output: Contribution to journal › Article › peer-review
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A high spatiotemporal study of somatic exocytosis with scanning electrochemical microscopy and nanoITIES electrodes
Welle, T. M., Alanis, K., Colombo, M. L., Sweedler, J. V. & Shen, M., 2018, In: Chemical Science. 9, 22, p. 4937-4941 5 p.Research output: Contribution to journal › Article › peer-review
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A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome
Menschaert, G., Vandekerckhove, T. T. M., Baggerman, G., Landuyt, B., Sweedler, J. V., Schoofs, L., Luyten, W. & Van Criekinge, W., Feb 5 2010, In: Journal of Proteome Research. 9, 2, p. 990-996 7 p.Research output: Contribution to journal › Article › peer-review
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Analysis of endogenous nucleotides by single cell capillary electrophoresis-mass spectrometry
Liu, J. X., Aerts, J. T., Rubakhin, S. S., Zhang, X. X. & Sweedler, J. V., Oct 15 2014, In: Analyst. 139, 22, p. 5835-5842 8 p.Research output: Contribution to journal › Article › peer-review
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Automated method for analysis of tryptophan and tyrosine metabolites using capillary electrophoresis with native fluorescence detection
Dailey, C. A., Garnier, N., Rubakhin, S. S. & Sweedler, J. V., Mar 2013, In: Analytical and bioanalytical chemistry. 405, 8, p. 2451-2459 9 p.Research output: Contribution to journal › Article › peer-review
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A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms
Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., King, T. L., Amaya, K. R., Arnett, C. M. & Sweedler, J. V., Jun 5 2018, In: Analytical Chemistry. 90, 11, p. 6725-6734 10 p.Research output: Contribution to journal › Article › peer-review
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Base-induced delignification of miscanthus x giganteus studied by three-dimensional confocal raman imaging
Chu, L. Q., Masyuko, R., Sweedler, J. V. & Bohn, P. W., Jul 1 2010, In: Bioresource Technology. 101, 13, p. 4919-4925 7 p.Research output: Contribution to journal › Article › peer-review
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Biomolecular imaging with a C60-SIMS/MALDI dual ion source hybrid mass spectrometer: Instrumentation, matrix enhancement, and single cell analysis
Lanni, E. J., Dunham, S. J. B., Nemes, P., Rubakhin, S. S. & Sweedler, J. V., Nov 2014, In: Journal of the American Society for Mass Spectrometry. 25, 11, p. 1897-1907 11 p.Research output: Contribution to journal › Article › peer-review
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Characterization of GdFFD, a D-amino acid-containing neuropeptide that functions as an extrinsic modulator of the Aplysia feeding circuit
Bai, L., Livnat, I., Romanova, E. V., Alexeeva, V., Yau, P. M., Vilim, F. S., Weiss, K. R., Jing, J. & Sweedler, J. V., Nov 15 2013, In: Journal of Biological Chemistry. 288, 46, p. 32837-32851 15 p.Research output: Contribution to journal › Article › peer-review
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Circadian integration of glutamatergic signals by little SAAS in novel suprachiasmatic circuits
Atkins, N., Mitchell, J. W., Romanova, E. V., Morgan, D. J., Cominski, T. P., Ecker, J. L., Pintar, J. E., Sweedler, J. V. & Gillette, M. U., 2010, In: PloS one. 5, 9, p. 1-13 13 p., e12612.Research output: Contribution to journal › Article › peer-review
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Classification of Large Cellular Populations and Discovery of Rare Cells Using Single Cell Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry
Ong, T. H., Kissick, D. J., Jansson, E. T., Comi, T. J., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Jul 21 2015, In: Analytical Chemistry. 87, 14, p. 7036-7042 7 p.Research output: Contribution to journal › Article › peer-review
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Combining small-volume metabolomic and transcriptomic approaches for assessing brain chemistry
Knolhoff, A. M., Nautiyal, K. M., Nemes, P., Kalachikov, S., Morozova, I., Silver, R. & Sweedler, J. V., Mar 19 2013, In: Analytical Chemistry. 85, 6, p. 3136-3143 8 p.Research output: Contribution to journal › Article › peer-review
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Comparing label-free quantitative peptidomics approaches to characterize diurnal variation of peptides in the rat suprachiasmatic nucleus
Southey, B. R., Lee, J. E., Zamdborg, L., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Jan 7 2014, In: Analytical Chemistry. 86, 1, p. 443-452 10 p.Research output: Contribution to journal › Article › peer-review
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Comparison of sample pre-treatments for laser desorption ionization and secondary ion mass spectrometry imaging of Miscanthus × giganteus
Li, Z., Bohn, P. W. & Sweedler, J. V., Jul 2010, In: Bioresource Technology. 101, 14, p. 5578-5585 8 p.Research output: Contribution to journal › Article › peer-review
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Composite modulatory feedforward loop contributes to the establishment of a network state
Wu, J. S., Vilim, F. S., Hatcher, N. G., Due, M. R., Sweedler, J. V., Weiss, K. R. & Jing, J., Apr 2010, In: Journal of neurophysiology. 103, 4, p. 2174-2184 11 p.Research output: Contribution to journal › Article › peer-review
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Conformational investigation of the structure-activity relationship of GdFFD and its analogues on an achatin-like neuropeptide receptor of: Aplysia californica involved in the feeding circuit
Do, T. D., Checco, J. W., Tro, M., Shea, J. E., Bowers, M. T. & Sweedler, J. V., 2018, In: Physical Chemistry Chemical Physics. 20, 34, p. 22047-22057 11 p.Research output: Contribution to journal › Article › peer-review
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Correction: Spatial organization of Pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy
Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 6058-6060 3 p.Research output: Contribution to journal › Article › peer-review
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Correlated imaging with C60-SIMS and confocal raman microscopy: Visualization of cell-scale molecular distributions in bacterial biofilms
Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Dunham, S. J. B., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 30 2014, In: Analytical chemistry. 86, 21, p. 10885-10891 7 p.Research output: Contribution to journal › Article › peer-review
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D-Alanine in the islets of Langerhans of rat pancreas
Ota, N., Rubakhin, S. S. & Sweedler, J. V., May 2 2014, In: Biochemical and Biophysical Research Communications. 447, 2, p. 328-333 6 p.Research output: Contribution to journal › Article › peer-review
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Differential peptidomics assessment of strain and age differences in mice in response to acute cocaine administration
Romanova, E. V., Rubakhin, S. S., Ossyra, J. R., Zombeck, J. A., Nosek, M. R., Sweedler, J. V. & Rhodes, J. S., Dec 1 2015, In: Journal of Neurochemistry. 135, 5, p. 1038-1048 11 p.Research output: Contribution to journal › Article › peer-review
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Direct cellular peptidomics of supraoptic magnocellular and hippocampal neurons in low-density cocultures
Millet, L. J., Bora, A., Sweedler, J. V. & Gillette, M. U., Jan 20 2010, In: ACS Chemical Neuroscience. 1, 1, p. 36-48 13 p.Research output: Contribution to journal › Article › peer-review
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Discovery of new enzymes and metabolic pathways by using structure and genome context
Zhao, S., Kumar, R., Sakai, A., Vetting, M. W., Wood, B. M. K., Brown, S., Bonanno, J. B., Hillerich, B. S., Seidel, R. D., Babbitt, P. C., Almo, S. C., Sweedler, J. V., Gerlt, J. A., Cronan, J. E. & Jacobson, M. P., 2013, In: Nature. 502, 7473, p. 698-702 5 p.Research output: Contribution to journal › Article › peer-review
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Disruption of microglia histone acetylation and protein pathways in mice exhibiting inflammation-associated depression-like symptoms
Rodriguez-Zas, S. L., Wu, C., Southey, B. R., O'Connor, J. C., Nixon, S. E., Garcia, R., Zavala, C., Lawson, M., McCusker, R. H., Romanova, E. V., Sweedler, J. V., Kelley, K. W. & Dantzer, R., Nov 2018, In: Psychoneuroendocrinology. 97, p. 47-58 12 p.Research output: Contribution to journal › Article › peer-review
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Distinct mechanisms produce functionally complementary actions of neuropeptides that are structurally related but derived from different precursors
Vilim, F. S., Sasaki, K., Rybak, J., Alexeeva, V., Cropper, E. C., Jing, J., Orekhova, I. V., Brezina, V., Price, D., Romanova, E. V., Rubakhin, S. S., Hatcher, N., Sweedler, J. V. & Weiss, K. R., Jan 6 2010, In: Journal of Neuroscience. 30, 1, p. 131-147 17 p.Research output: Contribution to journal › Article › peer-review
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Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry—Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS
Li, L., Andrén, P. E. & Sweedler, J. V., May 1 2018, In: Journal of the American Society for Mass Spectrometry. 29, 5, p. 801-806 6 p.Research output: Contribution to journal › Article › peer-review
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Effects of exercise and dietary epigallocatechin gallate and β-alanine on skeletal muscle in aged mice
Pence, B. D., Gibbons, T. E., Bhattacharya, T. K., Mach, H., Ossyra, J. M., Petr, G., Martin, S. A., Wang, L., Rubakhin, S. S., Sweedler, J. V., McCusker, R. H., Kelley, K. W., Rhodes, J. S., Johnson, R. W. & Woods, J. A., Oct 26 2015, In: Applied Physiology, Nutrition and Metabolism. 41, 2, p. 181-190 10 p.Research output: Contribution to journal › Article › peer-review
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Electrokinetic control of fluid transport in gold-coated nanocapillary array membranes in hybrid nanofluidic-microfluidic devices
Piruska, A., Branagan, S. P., Minnis, A. B., Wang, Z., Cropek, D. M., Sweedler, J. V. & Bohn, P. W., 2010, In: Lab on a chip. 10, 10, p. 1237-1244 8 p.Research output: Contribution to journal › Article › peer-review
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Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry
Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. U., Sweedler, J. V. & Kelleher, N. L., Feb 2010, In: Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.Research output: Contribution to journal › Article › peer-review
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Expired Epinephrine Maintains Chemical Concentration and Sterility
Weir, W. B., Fred, L. Y., Pike, M., Rubakhin, S. S., Ludwig, T. J., Shar, A. M., Zhu, L., Frederick, A., Uzoaru, I., Wang, L. & Sweedler, J. V., Jul 4 2018, In: Prehospital Emergency Care. 22, 4, p. 414-418 5 p.Research output: Contribution to journal › Article › peer-review
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Exploring Exercise- and Context-Induced Peptide Changes in Mice by Quantitative Mass Spectrometry
Dowd, S. E., Mustroph, M. L., Romanova, E. V., Southey, B. R., Pinardo, H., Rhodes, J. S. & Sweedler, J. V., Oct 24 2018, In: ACS Omega. 3, 10, p. 13817-13827 11 p.Research output: Contribution to journal › Article › peer-review
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Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry
Monroe, E. B., Annangudi, S. P., Wadhams, A. A., Richmond, T. A., Yang, N., Southey, B. R., Romanova, E. V., Schoofs, L., Baggerman, G. & Sweedler, J. V., May 1 2018, In: Journal of the American Society for Mass Spectrometry. 29, 5, p. 923-934 12 p.Research output: Contribution to journal › Article › peer-review
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Feedforward compensation mediated by the central and peripheral actions of a single neuropeptide discovered using representational difference analysis
Jing, J., Sweedler, J. V., Cropper, E. C., Alexeeva, V., Park, J. H., Romanova, E. V., Xie, F., Dembrow, N. C., Ludwar, B. C., Weiss, K. R. & Vilim, F. S., Dec 8 2010, In: Journal of Neuroscience. 30, 49, p. 16545-16558 14 p.Research output: Contribution to journal › Article › peer-review
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Fibrinogen α-chain-derived peptide is upregulated in hippocampus of rats exposed to acute morphine injection and spontaneous alternation testing
Maki, A. E., Morris, K. A., Catherman, K., Chen, X., Hatcher, N. G., Gold, P. E. & Sweedler, J. V., Jun 2014, In: Pharmacology Research and Perspectives. 2, 3, e00037.Research output: Contribution to journal › Article › peer-review
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Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock
Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. U., Aug 15 2018, In: ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.Research output: Contribution to journal › Article › peer-review
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Gene network dysregulation in the trigeminal ganglia and nucleus accumbens of a model of chronic migraine-associated hyperalgesia
Jeong, H., Moye, L. S., Southey, B. R., Hernandez, A. G., Dripps, I., Romanova, E. V., Rubakhin, S. S., Sweedler, J. V., Pradhan, A. A. & Rodriguez-Zas, S. L., Dec 18 2018, In: Frontiers in Systems Neuroscience. 12, 63.Research output: Contribution to journal › Article › peer-review
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Genome-wide analyses reveal a role for peptide hormones in planarian germline development
Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A., Oct 2010, In: PLoS biology. 8, 10, e1000509.Research output: Contribution to journal › Article › peer-review
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Genome-wide census and expression profiling of chicken neuropeptide and prohormone convertase genes
Delfino, K. R., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Feb 2010, In: Neuropeptides. 44, 1, p. 31-44 14 p.Research output: Contribution to journal › Article › peer-review
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Identification of best indicators of peptide-spectrum match using a permutation resampling approach
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 30 2014, In: Journal of Bioinformatics and Computational Biology. 12, 5, 1440001.Research output: Contribution to journal › Article › peer-review
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Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways
Cho, K., Evans, B. S., Wood, B. M. K., Kumar, R., Erb, T. J., Warlick, B. P., Gerlt, J. A. & Sweedler, J. V., Jun 1 2015, In: Metabolomics. 11, 3, p. 503-517 15 p.Research output: Contribution to journal › Article › peer-review
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Interrogation of spatial metabolome of Ginkgo biloba with high-resolution matrix-assisted laser desorption/ionization and laser desorption/ionization mass spectrometry imaging
Li, B., Neumann, E. K., Ge, J., Gao, W., Yang, H., Li, P. & Sweedler, J. V., Nov 2018, In: Plant Cell and Environment. 41, 11, p. 2693-2703 11 p.Research output: Contribution to journal › Article › peer-review
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Laminar stream of detergents for subcellular neurite damage in a microfluidic device: A simple tool for the study of neuroregeneration
Lee, C. Y., Romanova, E. V. & Sweedler, J. V., Jun 2013, In: Journal of Neural Engineering. 10, 3, 036020.Research output: Contribution to journal › Article › peer-review
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MALDI-guided SIMS: Multiscale imaging of metabolites in bacterial biofilms
Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Aerts, J. T., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 1 2014, In: Analytical Chemistry. 86, 18, p. 9139-9145 7 p.Research output: Contribution to journal › Article › peer-review
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Mass spectrometry imaging and GC-MS profiling of the mammalian peripheral sensory-motor circuit
Rubakhin, S. S., Ulanov, A. & Sweedler, J. V., Jun 1 2015, In: Journal of the American Society for Mass Spectrometry. 26, 6, p. 958-966 9 p.Research output: Contribution to journal › Article › peer-review
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Mass spectrometry screening reveals peptides modulated differentially in the medial prefrontal cortex of rats with disparate initial sensitivity to cocaine
Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Sep 2010, In: AAPS Journal. 12, 3, p. 443-454 12 p.Research output: Contribution to journal › Article › peer-review
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Microbeam-coupled capillary electrophoresis
Garty, G., Ehsan, M. U., Buonanno, M., Yang, Z., Sweedler, J. V. & Brenner, D. J., Sep 1 2015, In: Radiation Protection Dosimetry. 166, 1-4, p. 188-191 4 p., ncv148.Research output: Contribution to journal › Article › peer-review
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Molecular and Physiological Characterization of a Receptor for d -Amino Acid-Containing Neuropeptides
Checco, J. W., Zhang, G., Yuan, W. D., Yu, K., Yin, S. Y., Roberts-Galbraith, R. H., Yau, P. M., Romanova, E. V., Jing, J. & Sweedler, J. V., May 18 2018, In: ACS chemical biology. 13, 5, p. 1343-1352 10 p.Research output: Contribution to journal › Article › peer-review
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Multifactorial understanding of ion abundance in tandem mass spectrometry experiments
Fazal, Z., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., 2013, In: Journal of Proteomics and Bioinformatics. 6, 2, p. 23-29 7 p.Research output: Contribution to journal › Article › peer-review
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Multimodal Chemical Analysis of the Brain by High Mass Resolution Mass Spectrometry and Infrared Spectroscopic Imaging
Neumann, E. K., Comi, T. J., Spegazzini, N., Mitchell, J. W., Rubakhin, S. S., Gillette, M. U., Bhargava, R. & Sweedler, J. V., Oct 2 2018, In: Analytical Chemistry. 90, 19, p. 11572-11580 9 p.Research output: Contribution to journal › Article › peer-review
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Multimodal chemical imaging of molecular messengers in emerging Pseudomonas aeruginosa bacterial communities
Baig, N. F., Dunham, S. J. B., Morales-Soto, N., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 7 2015, In: Analyst. 140, 19, p. 6544-6552 9 p.Research output: Contribution to journal › Article › peer-review
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Nanofluidics in chemical analysis
Piruska, A., Gong, M., Sweedler, J. V. & Bohn, P. W., Feb 24 2010, In: Chemical Society Reviews. 39, 3, p. 1060-1072 13 p.Research output: Contribution to journal › Article › peer-review