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  • Jonathan V Sweedler
Article

Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry

Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. U., Sweedler, J. V. & Kelleher, N. L., Feb 2010, In : Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.

Research output: Contribution to journalArticle

Evaluation of database search programs for accurate detection of neuropeptides in tandem mass spectrometry experiments

Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 7 2012, In : Journal of Proteome Research. 11, 12, p. 6044-6055 12 p.

Research output: Contribution to journalArticle

Expired Epinephrine Maintains Chemical Concentration and Sterility

Weir, W. B., Fred, L. Y., Pike, M., Rubakhin, S. S., Ludwig, T. J., Shar, A. M., Zhu, L., Frederick, A., Uzoaru, I., Wang, L. & Sweedler, J. V., Jul 4 2018, In : Prehospital Emergency Care. 22, 4, p. 414-418 5 p.

Research output: Contribution to journalArticle

Exploring Exercise- and Context-Induced Peptide Changes in Mice by Quantitative Mass Spectrometry

Dowd, S. E., Mustroph, M. L., Romanova, E. V., Southey, B. R., Pinardo, H., Rhodes, J. S. & Sweedler, J. V., Oct 24 2018, In : ACS Omega. 3, 10, p. 13817-13827 11 p.

Research output: Contribution to journalArticle

Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry

Monroe, E. B., Annangudi, S. P., Wadhams, A. A., Richmond, T. A., Yang, N., Southey, B. R., Romanova, E. V., Schoofs, L., Baggerman, G. & Sweedler, J. V., May 1 2018, In : Journal of the American Society for Mass Spectrometry. 29, 5, p. 923-934 12 p.

Research output: Contribution to journalArticle

Feedforward compensation mediated by the central and peripheral actions of a single neuropeptide discovered using representational difference analysis

Jing, J., Sweedler, J. V., Cropper, E. C., Alexeeva, V., Park, J. H., Romanova, E. V., Xie, F., Dembrow, N. C., Ludwar, B. C., Weiss, K. R. & Vilim, F. S., Dec 8 2010, In : Journal of Neuroscience. 30, 49, p. 16545-16558 14 p.

Research output: Contribution to journalArticle

Fibrinogen α-chain-derived peptide is upregulated in hippocampus of rats exposed to acute morphine injection and spontaneous alternation testing

Maki, A. E., Morris, K. A., Catherman, K., Chen, X., Hatcher, N. G., Gold, P. E. & Sweedler, J. V., Jun 2014, In : Pharmacology Research and Perspectives. 2, 3, e00037.

Research output: Contribution to journalArticle

First survey and functional annotation of prohormone and convertase genes in the pig

Porter, K. I., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Nov 15 2012, In : BMC genomics. 13, 1, 582.

Research output: Contribution to journalArticle

Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock

Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. U., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.

Research output: Contribution to journalArticle

Genome-wide analyses reveal a role for peptide hormones in planarian germline development

Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A., Oct 2010, In : PLoS biology. 8, 10, e1000509.

Research output: Contribution to journalArticle

Genome-wide census and expression profiling of chicken neuropeptide and prohormone convertase genes

Delfino, K. R., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Feb 2010, In : Neuropeptides. 44, 1, p. 31-44 14 p.

Research output: Contribution to journalArticle

Glial D-serine gates NMDA receptors at excitatory synapses in prefrontal cortex

Fossat, P., Turpin, F. R., Sacchi, S., Dulong, J., Shi, T., Rivet, J. M., Sweedler, J. V., Pollegioni, L., Millan, M. J., Oliet, S. H. R. & Mothet, J. P., Mar 2012, In : Cerebral Cortex. 22, 3, p. 595-606 12 p.

Research output: Contribution to journalArticle

Identification of best indicators of peptide-spectrum match using a permutation resampling approach

Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 30 2014, In : Journal of Bioinformatics and Computational Biology. 12, 5, 1440001.

Research output: Contribution to journalArticle

Identification of prohormones and pituitary neuropeptides in the African cichlid, Astatotilapia burtoni

Hu, C. K., Southey, B. R., Romanova, E. V., Maruska, K. P., Sweedler, J. V. & Fernald, R. D., Aug 19 2016, In : BMC genomics. 17, 1, 660.

Research output: Contribution to journalArticle

Improved identification and quantitation of mature endogenous peptides in the rodent hypothalamus using a rapid conductive sample heating system

Yang, N., Anapindi, K. D. B., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Dec 7 2017, In : Analyst. 142, 23, p. 4476-4485 10 p.

Research output: Contribution to journalArticle

Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways

Cho, K., Evans, B. S., Wood, B. M. K., Kumar, R., Erb, T. J., Warlick, B. P., Gerlt, J. A. & Sweedler, J. V., Jun 1 2015, In : Metabolomics. 11, 3, p. 503-517 15 p.

Research output: Contribution to journalArticle

Interrogation of spatial metabolome of Ginkgo biloba with high-resolution matrix-assisted laser desorption/ionization and laser desorption/ionization mass spectrometry imaging

Li, B., Neumann, E. K., Ge, J., Gao, W., Yang, H., Li, P. & Sweedler, J. V., Nov 2018, In : Plant Cell and Environment. 41, 11, p. 2693-2703 11 p.

Research output: Contribution to journalArticle

Label-free quantitation of peptide release from neurons in a microfluidic device with mass spectrometry imaging

Zhong, M., Lee, C. Y., Croushore, C. A. & Sweedler, J. V., May 8 2012, In : Lab on a chip. 12, 11, p. 2037-2045 9 p.

Research output: Contribution to journalArticle

Lipid Analysis of 30 000 Individual Rodent Cerebellar Cells Using High-Resolution Mass Spectrometry

Neumann, E. K., Ellis, J. F., Triplett, A. E., Rubakhin, S. S. & Sweedler, J. V., Jan 1 2019, In : Analytical chemistry.

Research output: Contribution to journalArticle

MALDI-guided SIMS: Multiscale imaging of metabolites in bacterial biofilms

Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Aerts, J. T., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 1 2014, In : Analytical chemistry. 86, 18, p. 9139-9145 7 p.

Research output: Contribution to journalArticle

MALDI mass spectrometry imaging of neuronal cell cultures

Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., May 2011, In : Journal of the American Society for Mass Spectrometry. 22, 5, p. 828-836 9 p.

Research output: Contribution to journalArticle

MALDI MS Guided Liquid Microjunction Extraction for Capillary Electrophoresis-Electrospray Ionization MS Analysis of Single Pancreatic Islet Cells

Comi, T. J., Makurath, M. A., Philip, M. C., Rubakhin, S. S. & Sweedler, J. V., Jul 18 2017, In : Analytical chemistry. 89, 14, p. 7765-7772 8 p.

Research output: Contribution to journalArticle

Mass spectrometry imaging and identification of peptides associated with cephalic ganglia regeneration in Schmidtea mediterranea

Ong, T. H., Romanova, E. V., Roberts-Galbraith, R. H., Yang, N., Zimmerman, T. A., Collins, J. J., Lee, J. E., Kelleher, N. L., Newmark, P. A. & Sweedler, J. V., Apr 8 2016, In : Journal of Biological Chemistry. 291, 15, p. 8109-8120 12 p.

Research output: Contribution to journalArticle

Mass spectrometry imaging of complex microbial communities

Dunham, S. J. B., Ellis, J. F., Li, B. & Sweedler, J. V., 2017, In : Accounts of chemical research. 50, 1, p. 96-104 9 p.

Research output: Contribution to journalArticle

Mechanical tension modulates local and global vesicle dynamics in neurons

Ahmed, W. W., Li, T. C., Rubakhin, S. S., Chiba, A., Sweedler, J. V. & Saif, T. A., Jun 1 2012, In : Cellular and Molecular Bioengineering. 5, 2, p. 155-164 10 p.

Research output: Contribution to journalArticle

Metabolic differentiation of neuronal phenotypes by single-cell capillary electrophoresis-electrospray ionization-mass spectrometry

Nemes, P., Knolhoff, A. M., Rubakhin, S. S. & Sweedler, J. V., Sep 1 2011, In : Analytical chemistry. 83, 17, p. 6810-6817 8 p.

Research output: Contribution to journalArticle

Metal-assisted polyatomic SIMS and laser desorption/ionization for enhanced small molecule imaging of bacterial biofilms

Dunham, S. J. B., Comi, T. J., Ko, K., Li, B., Baig, N. F., Morales-Soto, N., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Jun 1 2016, In : Biointerphases. 11, 2, 02A325.

Research output: Contribution to journalArticle

Mice deficient in endothelin-converting enzyme-2 exhibit abnormal responses to morphine and altered peptide levels in the spinal cord

Miller, L. K., Hou, X., Rodriguiz, R. M., Gagnidze, K., Sweedler, J. V., Wetsel, W. C. & Devi, L. A., Dec 2011, In : Journal of Neurochemistry. 119, 5, p. 1074-1085 12 p.

Research output: Contribution to journalArticle

Microbeam-coupled capillary electrophoresis

Garty, G., Ehsan, M. U., Buonanno, M., Yang, Z., Sweedler, J. V. & Brenner, D. J., Sep 1 2015, In : Radiation Protection Dosimetry. 166, 1-4, p. 188-191 4 p., ncv148.

Research output: Contribution to journalArticle

Microfluidic device for the selective chemical stimulation of neurons and characterization of peptide release with mass spectrometry

Croushore, C. A., Supharoek, S. A., Lee, C. Y., Jakmunee, J. & Sweedler, J. V., Nov 6 2012, In : Analytical chemistry. 84, 21, p. 9446-9452 7 p.

Research output: Contribution to journalArticle

microMS: A Python Platform for Image-Guided Mass Spectrometry Profiling

Comi, T. J., Neumann, E. K., Do, T. D. & Sweedler, J. V., Sep 1 2017, In : Journal of the American Society for Mass Spectrometry. 28, 9, p. 1919-1928 10 p.

Research output: Contribution to journalArticle

Molecular and Physiological Characterization of a Receptor for d -Amino Acid-Containing Neuropeptides

Checco, J. W., Zhang, G., Yuan, W. D., Yu, K., Yin, S. Y., Roberts-Galbraith, R. H., Yau, P. M., Romanova, E. V., Jing, J. & Sweedler, J. V., May 18 2018, In : ACS chemical biology. 13, 5, p. 1343-1352 10 p.

Research output: Contribution to journalArticle

Molecular organization of drosophila neuroendocrine cells by dimmed

Park, D., Hadžić, T., Yin, P., Rusch, J., Abruzzi, K., Rosbash, M., Skeath, J. B., Panda, S., Sweedler, J. V. & Taghert, P. H., Sep 27 2011, In : Current Biology. 21, 18, p. 1515-1524 10 p.

Research output: Contribution to journalArticle

Multidimensional Top-Down Proteomics of Brain-Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol

Park, H. M., Satta, R., Davis, R. G., Goo, Y. A., Leduc, R. D., Fellers, R. T., Greer, J. B., Romanova, E. V., Rubakhin, S. S., Tai, R., Thomas, P. M., Sweedler, J. V., Kelleher, N. L., Patrie, S. M. & Lasek, A. W., Nov 1 2019, In : Journal of Proteome Research. 18, 11, p. 3999-4012 14 p.

Research output: Contribution to journalArticle

Multimodal Chemical Analysis of the Brain by High Mass Resolution Mass Spectrometry and Infrared Spectroscopic Imaging

Neumann, E. K., Comi, T. J., Spegazzini, N., Mitchell, J. W., Rubakhin, S. S., Gillette, M. U., Bhargava, R. & Sweedler, J. V., Oct 2 2018, In : Analytical chemistry. 90, 19, p. 11572-11580 9 p.

Research output: Contribution to journalArticle

Multimodal chemical imaging of molecular messengers in emerging Pseudomonas aeruginosa bacterial communities

Baig, N. F., Dunham, S. J. B., Morales-Soto, N., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 7 2015, In : Analyst. 140, 19, p. 6544-6552 9 p.

Research output: Contribution to journalArticle

Nanofluidics in chemical analysis

Piruska, A., Gong, M., Sweedler, J. V. & Bohn, P. W., Feb 24 2010, In : Chemical Society Reviews. 39, 3, p. 1060-1072 13 p.

Research output: Contribution to journalArticle

Neuropeptide release is impaired in a mouse model of fragile x mental retardation syndrome

Annangudi, S. P., Luszpak, A. E., Kim, S. H., Ren, S., Hatcher, N. G., Weiler, I. J., Thornley, K. T., Kile, B. M., Wightman, R. M., Greenough, W. T. & Sweedler, J. V., Apr 21 2010, In : ACS Chemical Neuroscience. 1, 4, p. 306-314 9 p.

Research output: Contribution to journalArticle

Neuropeptidomics of the Rat Habenular Nuclei

Yang, N., Anapindi, K. D. B., Rubakhin, S. S., Wei, P., Yu, Q., Li, L., Kenny, P. J. & Sweedler, J. V., Apr 6 2018, In : Journal of Proteome Research. 17, 4, p. 1463-1473 11 p.

Research output: Contribution to journalArticle

Newly Identified Aplysia SPTR-Gene Family-Derived Peptides: Localization and Function

Zhang, G., Yuan, W. D., Vilim, F. S., Romanova, E. V., Yu, K., Yin, S. Y., Le, Z. W., Xue, Y. Y., Chen, T. T., Chen, G. K., Chen, S. A., Cropper, E. C., Sweedler, J. V., Weiss, K. R. & Jing, J., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 2041-2053 13 p.

Research output: Contribution to journalArticle

Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens

Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A. & Rodriguez-Zas, S. L., Dec 1 2019, In : Molecular Neurobiology. 56, 12, p. 7929-7949 21 p.

Research output: Contribution to journalArticle

Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins

Do, T. D., Ellis, J. F., Neumann, E. K., Comi, T. J., Tillmaand, E. G., Lenhart, A. E., Rubakhin, S. S. & Sweedler, J. V., May 22 2018, In : ChemPhysChem. 19, 10, p. 1180-1191 12 p.

Research output: Contribution to journalArticle

PACAP and other neuropeptide targets link chronic migraine and opioid-induced hyperalgesia in mouse models

Anapindi, K. D. B., Yang, N., Romanova, E. V., Rubakhin, S. S., Tipton, A., Dripps, I., Sheets, Z., Sweedler, J. V. & Pradhan, A. A., 2019, In : Molecular and Cellular Proteomics. 18, 12, p. 2447-2458 12 p.

Research output: Contribution to journalArticle

Patch clamp electrophysiology and capillary electrophoresis-mass spectrometry metabolomics for single cell characterization

Aerts, J. T., Louis, K. R., Crandall, S. R., Govindaiah, G., Cox, C. L. & Sweedler, J. V., 2014, In : Analytical chemistry. 86, 6, p. 3203-3208 6 p.

Research output: Contribution to journalArticle