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Article
13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study
Jeon, S., Li, Q., Rubakhin, S. S., Sweedler, J. V., Smith, J. W., Neuringer, M., Kuchan, M. & Erdman, J. W., Jan 2019, In: Nutrition Research. 61, p. 102-108 7 p.Research output: Contribution to journal › Article › peer-review
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1-methylthio-d-xylulose 5-phosphate methylsulfurylase: A novel route to 1-deoxy-d-xylulose 5-phosphate in Rhodospirillum rubrum
Warlick, B. P., Evans, B. S., Erb, T. J., Ramagopal, U. A., Sriram, J., Imker, H. J., Sauder, J. M., Bonanno, J. B., Burley, S. K., Tabita, F. R., Almo, S. C., Sweedler, J. S. & Gerlt, J. A., Oct 23 2012, In: Biochemistry. 51, 42, p. 8324-8326 3 p.Research output: Contribution to journal › Article › peer-review
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Accurate assignment of significance to neuropeptide identifications using monte carlo K-permuted decoy databases
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 17 2014, In: PloS one. 9, 10, e111112.Research output: Contribution to journal › Article › peer-review
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A D-amino acid-containing neuropeptide discovery funnel
Livnat, I., Tai, H. C., Jansson, E. T., Bai, L., Romanova, E. V., Chen, T. T., Yu, K., Chen, S. A., Zhang, Y., Wang, Z. Y., Liu, D. D., Weiss, K. R., Jing, J. & Sweedler, J. V., 2016, In: Analytical Chemistry. 88, 23, p. 11868-11876 9 p.Research output: Contribution to journal › Article › peer-review
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A diverse family of novel peptide toxins from an unusual cone snail, Conus californicus
Gilly, W. F., Richmond, T. A., Duda, T. F., Elliger, C., Lebaric, Z., Schulz, J., Bingham, J. P. & Sweedler, J. V., Jan 2011, In: Journal of Experimental Biology. 214, 1, p. 147-161 15 p.Research output: Contribution to journal › Article › peer-review
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A high spatiotemporal study of somatic exocytosis with scanning electrochemical microscopy and nanoITIES electrodes
Welle, T. M., Alanis, K., Colombo, M. L., Sweedler, J. V. & Shen, M., 2018, In: Chemical Science. 9, 22, p. 4937-4941 5 p.Research output: Contribution to journal › Article › peer-review
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A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome
Menschaert, G., Vandekerckhove, T. T. M., Baggerman, G., Landuyt, B., Sweedler, J. V., Schoofs, L., Luyten, W. & Van Criekinge, W., Feb 5 2010, In: Journal of Proteome Research. 9, 2, p. 990-996 7 p.Research output: Contribution to journal › Article › peer-review
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Analyses of pig genomes provide insight into porcine demography and evolution
Groenen, M. A. M., Archibald, A. L., Uenishi, H., Tuggle, C. K., Takeuchi, Y., Rothschild, M. F., Rogel-Gaillard, C., Park, C., Milan, D., Megens, H. J., Li, S., Larkin, D. M., Kim, H., Frantz, L. A. F., Caccamo, M., Ahn, H., Aken, B. L., Anselmo, A., Anthon, C., Auvil, L. & 116 others, , Nov 15 2012, In: Nature. 491, 7424, p. 393-398 6 p.Research output: Contribution to journal › Article › peer-review
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Analysis of endogenous nucleotides by single cell capillary electrophoresis-mass spectrometry
Liu, J. X., Aerts, J. T., Rubakhin, S. S., Zhang, X. X. & Sweedler, J. V., Oct 15 2014, In: Analyst. 139, 22, p. 5835-5842 8 p.Research output: Contribution to journal › Article › peer-review
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A neuron-in-capillary platform for facile collection and mass spectrometric characterization of a secreted neuropeptide
Lee, C. Y., Fan, Y., Rubakhin, S. S., Yoon, S. & Sweedler, J. V., Jun 1 2016, In: Scientific reports. 6, 26940.Research output: Contribution to journal › Article › peer-review
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A novel pyridoxal 5'-phosphate-dependent amino acid racemase in the aplysia californica central nervous system
Wang, L., Ota, N., Romanova, E. V. & Sweedler, J. V., Apr 15 2011, In: Journal of Biological Chemistry. 286, 15, p. 13765-13774 10 p.Research output: Contribution to journal › Article › peer-review
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A one-step matrix application method for MALDI mass spectrometry imaging of bacterial colony biofilms
Li, B., Comi, T. J., Si, T., Dunham, S. J. B. & Sweedler, J. V., Nov 1 2016, In: Journal of Mass Spectrometry. 51, 11, p. 1030-1035 6 p.Research output: Contribution to journal › Article › peer-review
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Aplysia allatotropin-related peptide and its newly identified D-amino acid-containing epimer both activate a receptor and a neuronal target
Checco, J. W., Zhang, G., Yuan, W. D., Le, Z. W., Jing, J. & Sweedler, J. V., Oct 26 2019, In: Journal of Biological Chemistry. 293, 43, p. 16862-16873 12 p.Research output: Contribution to journal › Article › peer-review
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Aplysia locomotion: Network and behavioral actions of GdFFD, a D-amino acid-containing neuropeptide
Yang, C. Y., Yu, K., Wang, Y., Chen, S. A., Liu, D. D., Wang, Z. Y., Su, Y. N., Yang, S. Z., Chen, T. T., Livnat, I., Vilim, F. S., Cropper, E. C., Weiss, K. R., Sweedler, J. V. & Jing, J., Jan 1 2016, In: PloS one. 11, 1, e0147335.Research output: Contribution to journal › Article › peer-review
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A protease for 'middle-down' proteomics
Wu, C., Tran, J. C., Zamdborg, L., Durbin, K. R., Li, M., Ahlf, D. R., Early, B. P., Thomas, P. M., Sweedler, J. V. & Kelleher, N. L., Aug 1 2012, In: Nature Methods. 9, 8, p. 822-824 3 p.Research output: Contribution to journal › Article › peer-review
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A rotifer-derived paralytic compound prevents transmission of schistosomiasis to a mammalian host
Gao, J., Yang, N., Lewis, F. A., Yau, P., Collins, J. J., Sweedler, J. V. & Newmark, P. A., Oct 17 2019, In: PLoS biology. 17, 10, e3000485.Research output: Contribution to journal › Article › peer-review
Open Access -
A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis
Erb, T. J., Evans, B. S., Cho, K., Warlick, B. P., Sriram, J., Wood, B. M. K., Imker, H. J., Sweedler, J. V., Tabita, F. R. & Gerlt, J. A., Nov 2012, In: Nature chemical biology. 8, 11, p. 926-932 7 p.Research output: Contribution to journal › Article › peer-review
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Automated method for analysis of tryptophan and tyrosine metabolites using capillary electrophoresis with native fluorescence detection
Dailey, C. A., Garnier, N., Rubakhin, S. S. & Sweedler, J. V., Mar 2013, In: Analytical and bioanalytical chemistry. 405, 8, p. 2451-2459 9 p.Research output: Contribution to journal › Article › peer-review
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A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms
Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., King, T. L., Amaya, K. R., Arnett, C. M. & Sweedler, J. V., Jun 5 2018, In: Analytical Chemistry. 90, 11, p. 6725-6734 10 p.Research output: Contribution to journal › Article › peer-review
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Base-induced delignification of miscanthus x giganteus studied by three-dimensional confocal raman imaging
Chu, L. Q., Masyuko, R., Sweedler, J. V. & Bohn, P. W., Jul 1 2010, In: Bioresource Technology. 101, 13, p. 4919-4925 7 p.Research output: Contribution to journal › Article › peer-review
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Biomolecular imaging with a C60-SIMS/MALDI dual ion source hybrid mass spectrometer: Instrumentation, matrix enhancement, and single cell analysis
Lanni, E. J., Dunham, S. J. B., Nemes, P., Rubakhin, S. S. & Sweedler, J. V., Nov 2014, In: Journal of the American Society for Mass Spectrometry. 25, 11, p. 1897-1907 11 p.Research output: Contribution to journal › Article › peer-review
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Characterization of bacillus subtilis colony biofilms via mass spectrometry and fluorescence imaging
Si, T., Li, B., Zhang, K., Xu, Y., Zhao, H. & Sweedler, J. V., Jun 3 2016, In: Journal of Proteome Research. 15, 6, p. 1955-1962 8 p.Research output: Contribution to journal › Article › peer-review
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Characterization of GdFFD, a D-amino acid-containing neuropeptide that functions as an extrinsic modulator of the Aplysia feeding circuit
Bai, L., Livnat, I., Romanova, E. V., Alexeeva, V., Yau, P. M., Vilim, F. S., Weiss, K. R., Jing, J. & Sweedler, J. V., Nov 15 2013, In: Journal of Biological Chemistry. 288, 46, p. 32837-32851 15 p.Research output: Contribution to journal › Article › peer-review
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Chronic morphine alters the presynaptic protein profile: Identification of novel molecular targets using proteomics and network analysis
Abul-Husn, N. S., Annangudi, S. P., Ma'ayan, A., Ramos-Ortolaza, D. L., Stockton, S. D., Gomes, I., Sweedler, J. V. & Devi, L. A., Oct 17 2011, In: PloS one. 6, 10, e25535.Research output: Contribution to journal › Article › peer-review
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Circadian integration of glutamatergic signals by little SAAS in novel suprachiasmatic circuits
Atkins, N., Mitchell, J. W., Romanova, E. V., Morgan, D. J., Cominski, T. P., Ecker, J. L., Pintar, J. E., Sweedler, J. V. & Gillette, M. U., 2010, In: PloS one. 5, 9, p. 1-13 13 p., e12612.Research output: Contribution to journal › Article › peer-review
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Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons
Wang, T. A., Yu, Y. V., Govindaiah, G., Ye, X., Artinian, L., Coleman, T. P., Sweedler, J. V., Cox, C. L. & Gillette, M. U., Aug 17 2012, In: Science. 337, 6096, p. 839-842 4 p.Research output: Contribution to journal › Article › peer-review
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Classification of Large Cellular Populations and Discovery of Rare Cells Using Single Cell Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry
Ong, T. H., Kissick, D. J., Jansson, E. T., Comi, T. J., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Jul 21 2015, In: Analytical chemistry. 87, 14, p. 7036-7042 7 p.Research output: Contribution to journal › Article › peer-review
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Collection of peptides released from single neurons with particle-embedded monolithic capillaries followed by detection with matrix-assisted laser desorption/ionization mass spectrometry
Fan, Y., Rubakhin, S. & Sweedler, J. V., Dec 15 2011, In: Analytical chemistry. 83, 24, p. 9557-9563 7 p.Research output: Contribution to journal › Article › peer-review
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Combining small-volume metabolomic and transcriptomic approaches for assessing brain chemistry
Knolhoff, A. M., Nautiyal, K. M., Nemes, P., Kalachikov, S., Morozova, I., Silver, R. & Sweedler, J. V., Mar 19 2013, In: Analytical chemistry. 85, 6, p. 3136-3143 8 p.Research output: Contribution to journal › Article › peer-review
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Comparative peptidomics analysis of neural adaptations in rats repeatedly exposed to amphetamine
Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Nov 2012, In: Journal of Neurochemistry. 123, 2, p. 276-287 12 p.Research output: Contribution to journal › Article › peer-review
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Comparing label-free quantitative peptidomics approaches to characterize diurnal variation of peptides in the rat suprachiasmatic nucleus
Southey, B. R., Lee, J. E., Zamdborg, L., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Jan 7 2014, In: Analytical chemistry. 86, 1, p. 443-452 10 p.Research output: Contribution to journal › Article › peer-review
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Comparison of sample pre-treatments for laser desorption ionization and secondary ion mass spectrometry imaging of Miscanthus × giganteus
Li, Z., Bohn, P. W. & Sweedler, J. V., Jul 1 2010, In: Bioresource Technology. 101, 14, p. 5578-5585 8 p.Research output: Contribution to journal › Article › peer-review
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Composite modulatory feedforward loop contributes to the establishment of a network state
Wu, J. S., Vilim, F. S., Hatcher, N. G., Due, M. R., Sweedler, J. V., Weiss, K. R. & Jing, J., Apr 2010, In: Journal of neurophysiology. 103, 4, p. 2174-2184 11 p.Research output: Contribution to journal › Article › peer-review
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Conformational investigation of the structure-activity relationship of GdFFD and its analogues on an achatin-like neuropeptide receptor of: Aplysia californica involved in the feeding circuit
Do, T. D., Checco, J. W., Tro, M., Shea, J. E., Bowers, M. T. & Sweedler, J. V., 2018, In: Physical Chemistry Chemical Physics. 20, 34, p. 22047-22057 11 p.Research output: Contribution to journal › Article › peer-review
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Correction: Spatial organization of Pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy
Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 6058-6060 3 p.Research output: Contribution to journal › Article › peer-review
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Correlated imaging with C60-SIMS and confocal raman microscopy: Visualization of cell-scale molecular distributions in bacterial biofilms
Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Dunham, S. J. B., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 30 2014, In: Analytical chemistry. 86, 21, p. 10885-10891 7 p.Research output: Contribution to journal › Article › peer-review
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D-Alanine in the islets of Langerhans of rat pancreas
Ota, N., Rubakhin, S. S. & Sweedler, J. V., May 2 2014, In: Biochemical and Biophysical Research Communications. 447, 2, p. 328-333 6 p.Research output: Contribution to journal › Article › peer-review
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Differential peptidomics assessment of strain and age differences in mice in response to acute cocaine administration
Romanova, E. V., Rubakhin, S. S., Ossyra, J. R., Zombeck, J. A., Nosek, M. R., Sweedler, J. V. & Rhodes, J. S., Dec 1 2015, In: Journal of Neurochemistry. 135, 5, p. 1038-1048 11 p.Research output: Contribution to journal › Article › peer-review
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Direct cellular peptidomics of supraoptic magnocellular and hippocampal neurons in low-density cocultures
Millet, L. J., Bora, A., Sweedler, J. V. & Gillette, M. U., Jan 20 2010, In: ACS Chemical Neuroscience. 1, 1, p. 36-48 13 p.Research output: Contribution to journal › Article › peer-review
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Discovery of new enzymes and metabolic pathways by using structure and genome context
Zhao, S., Kumar, R., Sakai, A., Vetting, M. W., Wood, B. M. K., Brown, S., Bonanno, J. B., Hillerich, B. S., Seidel, R. D., Babbitt, P. C., Almo, S. C., Sweedler, J. V., Gerlt, J. A., Cronan, J. E. & Jacobson, M. P., 2013, In: Nature. 502, 7473, p. 698-702 5 p.Research output: Contribution to journal › Article › peer-review
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Disruption of microglia histone acetylation and protein pathways in mice exhibiting inflammation-associated depression-like symptoms
Rodriguez-Zas, S. L., Wu, C., Southey, B. R., O'Connor, J. C., Nixon, S. E., Garcia, R., Zavala, C., Lawson, M., McCusker, R. H., Romanova, E. V., Sweedler, J. V., Kelley, K. W. & Dantzer, R., Nov 2018, In: Psychoneuroendocrinology. 97, p. 47-58 12 p.Research output: Contribution to journal › Article › peer-review
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Distinct mechanisms produce functionally complementary actions of neuropeptides that are structurally related but derived from different precursors
Vilim, F. S., Sasaki, K., Rybak, J., Alexeeva, V., Cropper, E. C., Jing, J., Orekhova, I. V., Brezina, V., Price, D., Romanova, E. V., Rubakhin, S. S., Hatcher, N., Sweedler, J. V. & Weiss, K. R., Jan 6 2010, In: Journal of Neuroscience. 30, 1, p. 131-147 17 p.Research output: Contribution to journal › Article › peer-review
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Distinguishing endogenous d-amino acid-containing neuropeptides in individual neurons using tandem mass spectrometry
Bai, L., Romanova, E. V. & Sweedler, J. V., Apr 1 2011, In: Analytical Chemistry. 83, 7, p. 2794-2800 7 p.Research output: Contribution to journal › Article › peer-review
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Diversity of conotoxin types from Conus californicus reflects a diversity of prey types and a novel evolutionary history
Elliger, C. A., Richmond, T. A., Lebaric, Z. N., Pierce, N. T., Sweedler, J. V. & Gilly, W. F., Feb 2011, In: Toxicon. 57, 2, p. 311-322 12 p.Research output: Contribution to journal › Article › peer-review
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Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry—Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS
Li, L., Andrén, P. E. & Sweedler, J. V., May 1 2018, In: Journal of the American Society for Mass Spectrometry. 29, 5, p. 801-806 6 p.Research output: Contribution to journal › Article › peer-review
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Effects of exercise and dietary epigallocatechin gallate and β-alanine on skeletal muscle in aged mice
Pence, B. D., Gibbons, T. E., Bhattacharya, T. K., Mach, H., Ossyra, J. M., Petr, G., Martin, S. A., Wang, L., Rubakhin, S. S., Sweedler, J. V., McCusker, R. H., Kelley, K. W., Rhodes, J. S., Johnson, R. W. & Woods, J. A., Oct 26 2015, In: Applied Physiology, Nutrition and Metabolism. 41, 2, p. 181-190 10 p.Research output: Contribution to journal › Article › peer-review
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Electrokinetic control of fluid transport in gold-coated nanocapillary array membranes in hybrid nanofluidic-microfluidic devices
Piruska, A., Branagan, S. P., Minnis, A. B., Wang, Z., Cropek, D. M., Sweedler, J. V. & Bohn, P. W., 2010, In: Lab on a chip. 10, 10, p. 1237-1244 8 p.Research output: Contribution to journal › Article › peer-review
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Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry
Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. U., Sweedler, J. V. & Kelleher, N. L., Feb 2010, In: Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.Research output: Contribution to journal › Article › peer-review
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Evaluation of database search programs for accurate detection of neuropeptides in tandem mass spectrometry experiments
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 7 2012, In: Journal of Proteome Research. 11, 12, p. 6044-6055 12 p.Research output: Contribution to journal › Article › peer-review
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Expired Epinephrine Maintains Chemical Concentration and Sterility
Weir, W. B., Fred, L. Y., Pike, M., Rubakhin, S. S., Ludwig, T. J., Shar, A. M., Zhu, L., Frederick, A., Uzoaru, I., Wang, L. & Sweedler, J. V., Jul 4 2018, In: Prehospital Emergency Care. 22, 4, p. 414-418 5 p.Research output: Contribution to journal › Article › peer-review