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Article
Newly Identified Aplysia SPTR-Gene Family-Derived Peptides: Localization and Function
Zhang, G., Yuan, W. D., Vilim, F. S., Romanova, E. V., Yu, K., Yin, S. Y., Le, Z. W., Xue, Y. Y., Chen, T. T., Chen, G. K., Chen, S. A., Cropper, E. C., Sweedler, J. V., Weiss, K. R. & Jing, J., Aug 15 2018, In: ACS Chemical Neuroscience. 9, 8, p. 2041-2053 13 p.Research output: Contribution to journal › Article › peer-review
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On-Tissue Derivatization via Electrospray Deposition for Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging of Endogenous Fatty Acids in Rat Brain Tissues
Wu, Q., Comi, T. J., Li, B., Rubakhin, S. S. & Sweedler, J. V., Jun 7 2016, In: Analytical Chemistry. 88, 11, p. 5988-5995 8 p.Research output: Contribution to journal › Article › peer-review
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Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens
Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A. & Rodriguez-Zas, S. L., Dec 1 2019, In: Molecular Neurobiology. 56, 12, p. 7929-7949 21 p.Research output: Contribution to journal › Article › peer-review
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Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins
Do, T. D., Ellis, J. F., Neumann, E. K., Comi, T. J., Tillmaand, E. G., Lenhart, A. E., Rubakhin, S. S. & Sweedler, J. V., May 22 2018, In: ChemPhysChem. 19, 10, p. 1180-1191 12 p.Research output: Contribution to journal › Article › peer-review
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PACAP and other neuropeptide targets link chronic migraine and opioid-induced hyperalgesia in mouse models
Anapindi, K. D. B., Yang, N., Romanova, E. V., Rubakhin, S. S., Tipton, A., Dripps, I., Sheets, Z., Sweedler, J. V. & Pradhan, A. A., 2019, In: Molecular and Cellular Proteomics. 18, 12, p. 2447-2458 12 p.Research output: Contribution to journal › Article › peer-review
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Patch clamp electrophysiology and capillary electrophoresis-mass spectrometry metabolomics for single cell characterization
Aerts, J. T., Louis, K. R., Crandall, S. R., Govindaiah, G., Cox, C. L. & Sweedler, J. V., 2014, In: Analytical chemistry. 86, 6, p. 3203-3208 6 p.Research output: Contribution to journal › Article › peer-review
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Peptide identifications and false discovery rates using different mass spectrometry platforms
Anapindi, K. D. B., Romanova, E. V., Southey, B. R. & Sweedler, J. V., May 15 2018, In: Talanta. 182, p. 456-463 8 p.Research output: Contribution to journal › Article › peer-review
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Peptidomic analyses of mouse astrocytic cell lines and rat primary cultured astrocytes
Yin, P., Knolhoff, A. M., Rosenberg, H. J., Millet, L. J., Gillette, M. U. & Sweedler, J. V., Aug 3 2012, In: Journal of Proteome Research. 11, 8, p. 3965-3973 9 p.Research output: Contribution to journal › Article › peer-review
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Peptidomics and Secretomics of the Mammalian Peripheral Sensory-Motor System
Tillmaand, E. G., Yang, N., Kindt, C. A. C., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Dec 1 2015, In: Journal of the American Society for Mass Spectrometry. 26, 12, p. 2051-2061 11 p.Research output: Contribution to journal › Article › peer-review
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Prediction and biochemical demonstration of a catabolic pathway for the osmoprotectant proline betaine
Kumar, R., Zhao, S., Vetting, M. W., Wood, B. M. K., Sakai, A., Cho, K., Solbiati, J., Almo, S. C., Sweedler, J. V., Jacobson, M. P., Gerlt, J. A. & Cronan, J. E., Feb 11 2014, In: mBio. 5, 1, e00933-13.Research output: Contribution to journal › Article › peer-review
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Preface
Rubakhin, S. & Sweedler, J. V., Dec 1 2010, In: Methods in Molecular Biology. 656Research output: Contribution to journal › Article › peer-review
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Probing the production of amidated peptides following genetic and dietary copper manipulations
Yin, P., Bousquet-Moore, D., Annangudi, S. P., Southey, B. R., Mains, R. E., Eipper, B. A. & Sweedler, J. V., Dec 16 2011, In: PloS one. 6, 12, e28679.Research output: Contribution to journal › Article › peer-review
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Production of nitric oxide within the aplysia californica nervous system
Ye, X., Xie, F., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Mar 17 2010, In: ACS Chemical Neuroscience. 1, 3, p. 182-193 12 p.Research output: Contribution to journal › Article › peer-review
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Profiling metabolites and peptides in single cells
Rubakhin, S. S., Romanova, E. V., Nemes, P. & Sweedler, J. V., Apr 2011, In: Nature Methods. 8, 4, p. S20-S29Research output: Contribution to journal › Article › peer-review
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Profiling of Microbial Colonies for High-Throughput Engineering of Multistep Enzymatic Reactions via Optically Guided Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry
Si, T., Li, B., Comi, T. J., Wu, Y., Hu, P., Wu, Y., Min, Y., Mitchell, D. A., Zhao, H. & Sweedler, J. V., 2017, In: Journal of the American Chemical Society. 139, 36, p. 12466-12473 8 p.Research output: Contribution to journal › Article › peer-review
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Qualitative and quantitative metabolomic investigation of single neurons by capillary electrophoresis electrospray ionization mass spectrometry
Nemes, P., Rubakhin, S. S., Aerts, J. T. & Sweedler, J. V., Apr 2013, In: Nature Protocols. 8, 4, p. 783-799 17 p.Research output: Contribution to journal › Article › peer-review
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Quantitative neuroproteomics of the synapse.
Ramos-Ortolaza, D. L., Bushlin, I., Abul-Husn, N., Annangudi, S. P., Sweedler, J. & Devi, L. A., 2010, In: Methods in molecular biology (Clifton, N.J.). 615, p. 227-246 20 p.Research output: Contribution to journal › Article › peer-review
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Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus
Lee, J. E., Zamdborg, L., Southey, B. R., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Feb 1 2013, In: Journal of Proteome Research. 12, 2, p. 585-593 9 p.Research output: Contribution to journal › Article › peer-review
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Quantitative Reflection Imaging for the Morphology and Dynamics of Live Aplysia californica Pedal Ganglion Neurons Cultured on Nanostructured Plasmonic Crystals
Kang, S., Badea, A., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A. & Nuzzo, R. G., Sep 5 2017, In: Langmuir. 33, 35, p. 8640-8650 11 p.Research output: Contribution to journal › Article › peer-review
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Quantitative reflection imaging of fixed aplysia californica pedal ganglion neurons on nanostructured plasmonic crystals
Le, A. P., Kang, S., Thompson, L. B., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A. & Nuzzo, R. G., Nov 4 2013, In: Journal of Physical Chemistry B. 117, 42, p. 13069-13081 13 p.Research output: Contribution to journal › Article › peer-review
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Quantitative SIMS Imaging of Agar-Based Microbial Communities
Dunham, S. J. B., Ellis, J. F., Baig, N. F., Morales-Soto, N., Cao, T., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., May 1 2018, In: Analytical Chemistry. 90, 9, p. 5654-5663 10 p.Research output: Contribution to journal › Article › peer-review
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Rapid mitogenic regulation of the mTORC1 Inhibitor, DEPTOR, by phosphatidic acid
Yoon, M. S., Rosenberger, C. L., Wu, C., Truong, N., Sweedler, J. V. & Chen, J., May 7 2015, In: Molecular cell. 58, 3, p. 549-556 8 p.Research output: Contribution to journal › Article › peer-review
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Rapid Screening of Lanthipeptide Analogs via In-Colony Removal of Leader Peptides in Escherichia coli
Si, T., Tian, Q., Min, Y., Zhang, L., Sweedler, J. V., Van Der Donk, W. A. & Zhao, H., Sep 26 2018, In: Journal of the American Chemical Society. 140, 38, p. 11884-11888 5 p.Research output: Contribution to journal › Article › peer-review
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Relative quantitation of neuropeptides over a thousand-fold concentration range
Hou, X., Xie, F. & Sweedler, J. V., Dec 2012, In: Journal of the American Society for Mass Spectrometry. 23, 12, p. 2083-2093 11 p.Research output: Contribution to journal › Article › peer-review
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Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel
Alim, F. Z. D., Romanova, E. V., Tay, Y. L., Rahman, A. Y. B. A., Chan, K. G., Hong, K. W., Rogers, M., Southey, B. R., Greenwood, M. P., Mecawi, A. S., Mustafa, M. R., Mahy, N., Campbell, C., Antunes-Rodrigues, J., Sweedler, J. V., Murphy, D. & Hindmarch, C. C. T., Jun 2019, In: PloS one. 14, 6, e0216679.Research output: Contribution to journal › Article › peer-review
Open Access -
Secondary ion mass spectrometry imaging of molecular distributions in cultured neurons and their processes: Comparative analysis of sample preparation
Tucker, K. R., Li, Z., Rubakhin, S. S. & Sweedler, J. V., Nov 2012, In: Journal of the American Society for Mass Spectrometry. 23, 11, p. 1931-1938 8 p.Research output: Contribution to journal › Article › peer-review
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Serotonin and its metabolism in basal deuterostomes: Insights from Strongylocentrotus purpuratus and Xenoturbella bocki
Squires, L. N., Rubakhin, S. S., Wadhams, A. A., Talbot, K. N., Nakano, H., Moroz, L. L. & Sweedler, J. V., Aug 1 2010, In: Journal of Experimental Biology. 213, 15, p. 2647-2654 8 p.Research output: Contribution to journal › Article › peer-review
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Serotonin of mast cell origin contributes to hippocampal function
Nautiyal, K. M., Dailey, C. A., Jahn, J. L., Rodriquez, E., Son, N. H., Sweedler, J. V. & Silver, R., Aug 2012, In: European Journal of Neuroscience. 36, 3, p. 2347-2359 13 p.Research output: Contribution to journal › Article › peer-review
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Signals from the Brainstem Sleep/Wake Centers Regulate Behavioral Timing via the Circadian Clock
Abbott, S. M., Arnold, J. M., Chang, Q., Miao, H., Ota, N., Cecala, C., Gold, P. E., Sweedler, J. V. & Gillette, M. U., Aug 12 2013, In: PloS one. 8, 8, e70481.Research output: Contribution to journal › Article › peer-review
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Single-cell metabolomics: Changes in the metabolome of freshly isolated and cultured neurons
Nemes, P., Knolhoff, A. M., Rubakhin, S. S. & Sweedler, J. V., Oct 17 2012, In: ACS Chemical Neuroscience. 3, 10, p. 782-792 11 p.Research output: Contribution to journal › Article › peer-review
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Single Cell Peptide Heterogeneity of Rat Islets of Langerhans
Jansson, E. T., Comi, T. J., Rubakhin, S. S. & Sweedler, J. V., Sep 16 2016, In: ACS chemical biology. 11, 9, p. 2588-2595 8 p.Research output: Contribution to journal › Article › peer-review
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Single Cell Profiling Using Ionic Liquid Matrix-Enhanced Secondary Ion Mass Spectrometry for Neuronal Cell Type Differentiation
Do, T. D., Comi, T. J., Dunham, S. J. B., Rubakhin, S. S. & Sweedler, J. V., Mar 7 2017, In: Analytical Chemistry. 89, 5, p. 3078-3086 9 p.Research output: Contribution to journal › Article › peer-review
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Single Synaptic Observation of Cholinergic Neurotransmission on Living Neurons: Concentration and Dynamics
Shen, M., Qu, Z., Deslaurier, J., Welle, T. M., Sweedler, J. V. & Chen, R., Jun 27 2018, In: Journal of the American Chemical Society. 140, 25, p. 7764-7768 5 p.Research output: Contribution to journal › Article › peer-review
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Small molecule analysis and imaging of fatty acids in the zebra finch song system using time-of-flight-secondary ion mass spectrometry
Amaya, K. R., Sweedler, J. V. & Clayton, D. F., Aug 2011, In: Journal of Neurochemistry. 118, 4, p. 499-511 13 p.Research output: Contribution to journal › Article › peer-review
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Spatial correlation of confocal raman scattering and secondary ion mass spectrometric molecular images of lignocellulosic materials
Li, Z., Chu, L. Q., Sweedler, J. V. & Bohn, P. W., Apr 1 2010, In: Analytical chemistry. 82, 7, p. 2608-2611 4 p.Research output: Contribution to journal › Article › peer-review
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Spatially dependent alkyl quinolone signaling responses to antibiotics in Pseudomonas aeruginosa swarms
Morales-Soto, N., Dunham, S. J. B., Baig, N. F., Ellis, J. F., Madukoma, C. S., Bohn, P. W., Sweedler, J. V. & Shrout, J. D., Jun 15 2018, In: Journal of Biological Chemistry. 293, 24, p. 9544-9552 9 p.Research output: Contribution to journal › Article › peer-review
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Spatial organization of pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy
Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 5700-5708 9 p.Research output: Contribution to journal › Article › peer-review
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Stimulation and release from neurons via a dual capillary collection device interfaced to mass spectrometry
Fan, Y., Lee, C. Y., Rubakhin, S. S. & Sweedler, J. V., Nov 7 2013, In: Analyst. 138, 21, p. 6337-6346 10 p.Research output: Contribution to journal › Article › peer-review
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Storage and uptake of D-serine into astrocytic synaptic-like vesicles specify gliotransmission
Martineau, M., Shi, T., Puyal, J., Knolhoff, A. M., Dulong, J., Gasnier, B., Klingauf, J., Sweedler, J. V., Jahn, R. & Mothet, J. P., Feb 20 2013, In: Journal of Neuroscience. 33, 8, p. 3413-3423 11 p.Research output: Contribution to journal › Article › peer-review
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Stretched tissue mounting for MALDI mass spectrometry imaging
Tucker, K. R., Lanni, E. J., Serebryannyy, L. A., Rubakhin, S. & Sweedler, J. V., Dec 1 2011, In: Analytical chemistry. 83, 23, p. 9181-9185 5 p.Research output: Contribution to journal › Article › peer-review
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Synthesis, accumulation, and release of d-aspartate in the Aplysia californica CNS
Scanlan, C., Shi, T., Hatcher, N. G., Rubakhin, S. S. & Sweedler, J. V., Dec 2010, In: Journal of Neurochemistry. 115, 5, p. 1234-1244 11 p.Research output: Contribution to journal › Article › peer-review
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Targeted single-cell microchemical analysis: MS-based peptidomics of individual paraformaldehyde-fixed and immunolabeled neurons
Neupert, S., Rubakhin, S. S. & Sweedler, J. V., Aug 24 2012, In: Chemistry and Biology. 19, 8, p. 1010-1019 10 p.Research output: Contribution to journal › Article › peer-review
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The ctenophore genome and the evolutionary origins of neural systems
Moroz, L. L., Kocot, K. M., Citarella, M. R., Dosung, S., Norekian, T. P., Povolotskaya, I. S., Grigorenko, A. P., Dailey, C., Berezikov, E., Buckley, K. M., Ptitsyn, A., Reshetov, D., Mukherjee, K., Moroz, T. P., Bobkova, Y., Yu, F., Kapitonov, V. V., Jurka, J., Bobkov, Y. V., Swore, J. J. & 16 others, , 2014, In: Nature. 510, 7503, p. 109-114 6 p.Research output: Contribution to journal › Article › peer-review
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The effects of aging on biosynthetic processes in the rat hypothalamic osmoregulatory neuroendocrine system
Greenwood, M. P., Greenwood, M., Romanova, E. V., Mecawi, A. S., Paterson, A., Sarenac, O., Japundžić-Žigon, N., Antunes-Rodrigues, J., Paton, J. F. R., Sweedler, J. V. & Murphy, D., May 2018, In: Neurobiology of Aging. 65, p. 178-191 14 p.Research output: Contribution to journal › Article › peer-review
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The genome of a songbird
Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M., Balakrishnan, C. N. & 62 others, , Apr 1 2010, In: Nature. 464, 7289, p. 757-762 6 p.Research output: Contribution to journal › Article › peer-review
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The modified-bead stretched sample method: Development and application to MALDI-MS imaging of protein localization in the spinal cord
Tucker, K. R., Serebryannyy, L. A., Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., 2011, In: Chemical Science. 2, 4, p. 785-795 11 p.Research output: Contribution to journal › Article › peer-review
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The Notch effector gene Hes1 regulates migration of hypothalamic neurons, neuropeptide content and axon targeting to the pituitary
Aujla, P. K., Bora, A., Monahan, P., Sweedler, J. V. & Raetzman, L. T., May 1 2011, In: Developmental Biology. 353, 1, p. 61-71 11 p.Research output: Contribution to journal › Article › peer-review
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Therapeutic peptide production in Drosophila
Park, D., Hou, X., Sweedler, J. V. & Taghert, P. H., Aug 2012, In: Peptides. 36, 2, p. 251-256 6 p.Research output: Contribution to journal › Article › peer-review
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The zebra finch neuropeptidome: Prediction, detection and expression
Xie, F., London, S. E., Southey, B. R., Annangudi, S. P., Amare, A., Rodriguez-Zas, S. L., Clayton, D. F. & Sweedler, J. V., Apr 1 2010, In: BMC biology. 8, 28.Research output: Contribution to journal › Article › peer-review
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Three-dimensional mesostructures as high-temperature growth templates, electronic cellular scaffolds, and self-propelled microrobots
Yan, Z., Han, M., Shi, Y., Badea, A., Yang, Y., Kulkarni, A., Hanson, E., Kandel, M. E., Wen, X., Zhang, F., Luo, Y., Lin, Q., Zhang, H., Guo, X., Huang, Y., Nan, K., Jia, S., Oraham, A. W., Mevis, M. B., Lim, J. & 19 others, , Nov 7 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 45, p. E9455-E9464Research output: Contribution to journal › Article › peer-review