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• Ultralocalized thermal reactions in subnanoliter droplets-in-air

  Salm, E., Guevara, C. D., Dak, P., Dorvel, B. R., Reddy, B., Alam, M. A. & Bashir, R., Feb 26 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3310-3315 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Air
  • Nucleic Acid Denaturation
  • Hot Temperature
  • Temperature
  • Silicon

• Ultra-localized single cell electroporation using silicon nanowires

  Jokilaakso, N., Salm, E., Chen, A., Millet, L., Guevara, C. D., Dorvel, B., Reddy, B., Karlstrom, A. E., Chen, Y., Ji, H., Sooryakumar, R. & Bashir, R., Feb 7 2013, In: Lab on a chip. 13, 3, p. 336-339 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanowires
  • Electroporation
  • Silicon
  • Cells
  • Developmental Biology

• Tip-based nanofabrication of arbitrary shapes of graphene nanoribbons for device applications

  Hu, H., Banerjee, S., Estrada, D., Bashir, R. & King, W. P., 2015, In: RSC Advances. 5, 46, p. 37006-37012 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanoribbons
  • Graphite
  • Carbon Nanotubes
  • Graphene
  • Nanotechnology

• Tailoring the dependency between rigidity and water uptake of a microfabricated hydrogel with the conformational rigidity of a polymer cross-linker

  Schmidt, J. J., Jeong, J. H., Chan, V., Cha, C., Baek, K., Lai, M. H., Bashir, R. & Kong, H., May 13 2013, In: Biomacromolecules. 14, 5, p. 1361-1369 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Rigidity
  • Polymers
  • Methacrylates

• Stereolithographic 3D bioprinting for biomedical applications

  Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bioprinting
  • Stereolithography
  • Medical applications
  • Regenerative Medicine
  • Fabrication

• Smartphone-Imaged HIV-1 Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) on a Chip from Whole Blood

  Damhorst, G. L., Duarte-Guevara, C., Chen, W., Ghonge, T., Cunningham, B. T. & Bashir, R., Sep 1 2015, In: Engineering. 1, 3, p. 324-335 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Viruses
  • Transcription
  • Amplification
  • Smartphones
  • Blood

• Slowing DNA transport using graphene-DNA interactions

  Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In: Advanced Functional Materials. 25, 6, p. 936-946 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Graphite
  • Graphene
  • Nanopores
  • graphene
  • interactions

• Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines

  Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In: Advanced Functional Materials. 28, 23, 1801145.

  Research output: Contribution to journal › Article › peer-review

  • walking machines
  • Scaffolds
  • Tissue
  • Robotics
  • Actuators

• Robust label-free microRNA detection using one million ISFET array

  Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In: Biomedical microdevices. 20, 2, 1 p.

  Research output: Contribution to journal › Article › peer-review

  • Ion sensitive field effect transistors
  • Nucleic acids
  • Assays
  • Nucleic Acids
  • Molecules

• Point-of-care sensors for the management of sepsis

  Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In: Nature biomedical engineering. 2, 9, p. 640-648 9 p.

  Research output: Contribution to journal › Review article › peer-review

  • Point-of-Care Systems
  • Sepsis
  • Health
  • Sensors
  • Infection

• Pixelated spatial gene expression analysis from tissue

  Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In: Nature communications. 9, 1, 202.

  Research output: Contribution to journal › Article › peer-review

  • gene expression
  • Gene expression
  • Tissue
  • ribonucleic acids
  • Amplification

• Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes

  Neiman, J. A. S., Raman, R., Chan, V., Rhoads, M. G., Raredon, M. S. B., Velazquez, J. J., Dyer, R. L., Bashir, R., Hammond, P. T. & Griffith, L. G., Apr 1 2015, In: Biotechnology and bioengineering. 112, 4, p. 777-787 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Hepatocytes
  • Stereolithography
  • Hydrogels
  • Scaffolds
  • Polyethylene Glycol Dimethacrylate Hydrogel

• Perspective: The promise of multi-cellular engineered living systems

  Kamm, R. D., Bashir, R., Arora, N., Dar, R. D., Gillette, M. U., Griffith, L. G., Kemp, M. L., Kinlaw, K., Levin, M., Martin, A. C., McDevitt, T. C., Nerem, R. M., Powers, M. J., Saif, T. A., Sharpe, J., Takayama, S., Takeuchi, S., Weiss, R., Ye, K., Yevick, H. G. & 1 others, Zaman, M. H., Dec 1 2018, In: APL Bioengineering. 2, 4, 040901.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Bioprinting
  • Cytology
  • Stem cells
  • Organoids
  • Assays

• Patterned Three-Dimensional Encapsulation of Embryonic Stem Cells using Dielectrophoresis and Stereolithography

  Bajaj, P., Marchwiany, D., Duarte, C. & Bashir, R., Mar 2013, In: Advanced Healthcare Materials. 2, 3, p. 450-458 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Stem cells
  • Hydrogels
  • Electrophoresis
  • Encapsulation

• Optomechanical microrheology of single adherent cancer cells

  Adeniba, O. O., Corbin, E. A., Ewoldt, R. H. & Bashir, R., Mar 1 2018, In: APL Bioengineering. 2, 1, 016108.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cells
  • Viscoelastic Substances
  • Cell membranes
  • Soft materials
  • Mechanical properties

• Optomechanical measurement of the stiffness of single adherent cells

  Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In: Lab on a chip. 15, 17, p. 3460-3464 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Substrates
  • Stiffness
  • Mechanical properties
  • Phase shift
  • Lasers

• On-chip parallel detection of foodborne pathogens using loop-mediated isothermal amplification

  Duarte, C., Salm, E., Dorvel, B., Reddy, B. & Bashir, R., Oct 2013, In: Biomedical microdevices. 15, 5, p. 821-830 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Pathogens
  • Silicon
  • Amplification
  • Nucleic Acids
  • Nucleic acids

• On-chip metal/polypyrrole quasi-reference electrodes for robust ISFET operation

  Duarte-Guevara, C., Swaminathan, V. V., Burgess, M., Reddy, B., Salm, E., Liu, Y. S., Rodriguez-Lopez, J. & Bashir, R., May 21 2015, In: Analyst. 140, 10, p. 3630-3641 12 p.

  Research output: Contribution to journal › Article › peer-review

  • polypyrrole
  • Ion sensitive field effect transistors
  • Polypyrroles
  • Ion-Selective Electrodes
  • Metals

• On-chip magnetic separation and encapsulation of cells in droplets

  Chen, A., Byvank, T., Chang, W. J., Bharde, A., Vieira, G., Miller, B. L., Chalmers, J. J., Bashir, R. & Sooryakumar, R., Mar 21 2013, In: Lab on a chip. 13, 6, p. 1172-1181 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Magnetic separation
  • Cell Separation
  • Encapsulation
  • Sorting
  • Cells

• Nanotextured superhydrophobic electrodes enable detection of attomolar-scale DNA concentration within a droplet by non-faradaic impedance spectroscopy

  Ebrahimi, A., Dak, P., Salm, E., Dash, S., Garimella, S. V., Bashir, R. & Alam, M. A., Nov 7 2013, In: Lab on a chip. 13, 21, p. 4248-4256 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Dielectric Spectroscopy
  • Spectroscopy
  • DNA
  • Electric Impedance
  • Electrodes

• Nanopore-based assay for detection of methylation in double-stranded DNA fragments

  Shim, J., Kim, Y., Humphreys, G. I., Nardulli, A. M., Kosari, F., Vasmatzis, G., Taylor, W. R., Ahlquist, D. A., Myong, S. & Bashir, R., Jan 27 2015, In: ACS Nano. 9, 1, p. 290-300 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Methylation
  • methylation
  • Nanopores
  • Assays
  • DNA

• Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

  Hassan, U., Zhu, R. & Bashir, R., Apr 21 2018, In: Lab on a chip. 18, 8, p. 1231-1240 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Biosensing Techniques
  • Biosensors
  • Sepsis
  • Multivariate Analysis
  • Systemic Inflammatory Response Syndrome

• Multiplexed detection of infectious diseases with microfluidic loop-mediated isothermal amplification and a smartphone

  Sun, F., Chen, W., Yu, H., Omob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Dec 19 2017, 2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017. Institute of Electrical and Electronics Engineers Inc., p. 241-244 4 p. (2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017; vol. 2017-December).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • pathogens
  • Pathogens
  • infectious diseases
  • Smartphone
  • Microfluidics

• Mobile Platform for Multiplexed Detection and Differentiation of Disease-Specific Nucleic Acid Sequences, Using Microfluidic Loop-Mediated Isothermal Amplification and Smartphone Detection

  Chen, W., Yu, H., Sun, F., Ornob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Nov 7 2017, In: Analytical chemistry. 89, 21, p. 11219-11226 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nucleic acid sequences
  • Pathogens
  • Microfluidics
  • Amplification
  • Smartphones

• Mobile biosensing using the sensing capabilities of smartphone cameras

  Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., Ganguli, A., Lumetta, S. & Bashir, R., Jan 4 2018, 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; vol. 2018-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Smartphones
  • cameras
  • Image processing
  • Health
  • Cameras

• Micromechanical properties of hydrogels measured with MEMS resonant sensors

  Corbin, E. A., Millet, L. J., Pikul, J. H., Johnson, C. L., Georgiadis, J. G., King, W. P. & Bashir, R., Apr 2013, In: Biomedical microdevices. 15, 2, p. 311-319 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • MEMS
  • poly(ethylene glycol)diacrylate
  • Electrohydrodynamics
  • Drug delivery

• Microfluidics and Nanotechnology for Detection of Global Infectious Diseases

  Damhorst, G. L., Murtagh, M., Rodriguez, W. R. & Bashir, R., Feb 1 2015, In: Proceedings of the IEEE. 103, 2, p. 150-160 11 p., 7067024.

  Research output: Contribution to journal › Review article › peer-review

  • Nanotechnology
  • Microfluidics
  • Viruses
  • Pathogens
  • Industry

• Microfluidic CD4⁺ and CD8⁺ T lymphocyte counters for point-of-care HIV diagnostics using whole blood

  Watkins, N. N., Hassan, U., Damhorst, G., Ni, H., Vaid, A., Rodriguez, W. & Bashir, R., Dec 4 2013, In: Science Translational Medicine. 5, 214, 214ra170.

  Research output: Contribution to journal › Article › peer-review

  • Microfluidics
  • Point-of-Care Systems
  • HIV
  • T-Lymphocytes
  • Equipment and Supplies

• Micro- and nanotechnology for HIV/AIDS diagnostics in resource-limited settings

  Damhorst, G. L., Watkins, N. N. & Bashir, R., 2013, In: IEEE Transactions on Biomedical Engineering. 60, 3, p. 715-726 12 p.

  Research output: Contribution to journal › Review article › peer-review

  • Viruses
  • Nanotechnology
  • T-cells
  • Immune system
  • Blood

• Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

  Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In: Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Shape optimization
  • Muscle
  • Tissue
  • Skeletal Muscle
  • Muscles

• Investigating the Life Expectancy and Proteolytic Degradation of Engineered Skeletal Muscle Biological Machines

  Cvetkovic, C., Ferrall-Fairbanks, M. C., Ko, E., Grant, L., Kong, H., Platt, M. O. & Bashir, R., Dec 1 2017, In: Scientific reports. 7, 1, 3775.

  Research output: Contribution to journal › Article › peer-review

  • Life Expectancy
  • Peptide Hydrolases
  • Skeletal Muscle
  • Tissue Engineering
  • Matrix Metalloproteinases

• Integrated cantilever-based biosensors for the detection of chemical and biological entities

  Corbin, E. A., YekrangSafakar, A., Adeniba, O., Gupta, A., Park, K. & Bashir, R., Jan 1 2017, Nanotechnology in Biology and Medicine: Methods, Devices, and Applications, Second Edition. CRC Press, p. 469-529 61 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Biosensing Techniques
  • Biosensors
  • Sensors
  • Vacuum
  • Air

• In situ self-folding assembly of a multi-walled hydrogel tube for uniaxial sustained molecular release

  Baek, K., Jeong, J. H., Shkumatov, A., Bashir, R. & Kong, H., Oct 18 2013, In: Advanced Materials. 25, 39, p. 5568-5573 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Gels
  • poly(ethylene glycol)diacrylate
  • Intercellular Signaling Peptides and Proteins

• Impedance microbiology and microbial screening strategy for detecting pathogens in food

  Flint, S., Naila, A. & Bashir, R., 2015, High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 285-300 16 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Microbiology
  • Pathogens
  • food pathogens
  • microbiology
  • Electric Impedance

• Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya, and Dengue at point-of-care

  Ganguli, A., Ornob, A., Yu, H., Damhorst, G. L., Chen, W., Sun, F., Bhuiya, A., Cunningham, B. T. & Bashir, R., Dec 1 2017, In: Biomedical microdevices. 19, 4, 73.

  Research output: Contribution to journal › Article › peer-review

  • Smartphone
  • Dengue
  • Point-of-Care Systems
  • Smartphones
  • Blood

• Graphene-Based Platform for Infrared Near-Field Nanospectroscopy of Water and Biological Materials in an Aqueous Environment

  Khatib, O., Wood, J. D., McLeod, A. S., Goldflam, M. D., Wagner, M., Damhorst, G. L., Koepke, J. C., Doidge, G. P., Rangarajan, A., Bashir, R., Pop, E., Lyding, J. W., Thiemens, M. H., Keilmann, F. & Basov, D. N., Aug 25 2015, In: ACS Nano. 9, 8, p. 7968-7975 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Graphite
  • Biological materials
  • Graphene
  • Near field scanning optical microscopy
  • viruses

• Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction

  Lee, M. K., Rich, M. H., Shkumatov, A., Jeong, J. H., Boppart, M. D., Bashir, R., Gillette, M. U., Lee, J. & Kong, H., Jan 1 2015, In: Advanced Healthcare Materials. 4, 2, p. 195-201 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Glaciers
  • Ice Cover
  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Microchannels

• Fabrication and characterization of optogenetic, multi-strip cardiac muscles

  Chan, V., Neal, D. M., Uzel, S. G. M., Kim, H., Bashir, R. & Asada, H. H., May 21 2015, In: Lab on a chip. 15, 10, p. 2258-2268 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Muscle
  • Myocardium
  • Fabrication
  • Tissue engineering

• Evidence of differential mass change rates between human breast cancer cell lines in culture

  Corbin, E. A., Adeniba, O. O., Cangellaris, O. V., King, W. P. & Bashir, R., Mar 1 2017, In: Biomedical microdevices. 19, 1, 10.

  Research output: Contribution to journal › Article › peer-review

  • Cell culture
  • Cells
  • Breast Neoplasms
  • Cell Line
  • Growth

• Enhanced sub-micron colloidal particle separation with interdigitated microelectrode arrays using mixed AC/DC dielectrophoretic scheme

  Swaminathan, V. V., Shannon, M. A. & Bashir, R., Apr 2015, In: Biomedical microdevices. 17, 2

  Research output: Contribution to journal › Article › peer-review

  • Microelectrodes
  • Electrodes
  • 1-(2-(dodecyloxy)ethyl)pyrrolidine hydrochloride
  • DNA Viruses
  • Static Electricity

• Engineering as a new frontier for translational medicine

  Chien, S., Bashir, R., Nerem, R. M. & Pettigrew, R., Apr 1 2015, In: Science Translational Medicine. 7, 281, 281fs13.

  Research output: Contribution to journal › Article › peer-review

  • Translational Medical Research
  • Medicine
  • Delivery of Health Care
  • Therapeutics

• Enabling microscale and nanoscale approaches for bioengineered cardiac tissue

  Chan, V., Raman, R., Cvetkovic, C. & Bashir, R., Mar 26 2013, In: ACS Nano. 7, 3, p. 1830-1837 8 p.

  Research output: Contribution to journal › Article › peer-review

  • microbalances
  • Tissue
  • Carbon Nanotubes
  • Methacrylates
  • gelatins

• Electronic desalting for controlling the ionic environment in droplet-based biosensing platforms

  Swaminathan, V. V., Dak, P., Reddy, B., Salm, E., Duarte-Guevara, C., Zhong, Y., Fischer, A., Liu, Y. S., Alam, M. A. & Bashir, R., Feb 2 2015, In: Applied Physics Letters. 106, 5, 053105.

  Research output: Contribution to journal › Article › peer-review

  • salts
  • platforms
  • electronics
  • platinum black
  • electrodes

• Electron beam induced local crystallization of HfO₂ nanopores for biosensing applications

  Shim, J., Rivera, J. A. & Bashir, R., Nov 21 2013, In: Nanoscale. 5, 22, p. 10887-10893 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Crystallization
  • Electron beams
  • Graphite
  • Membranes

• Electrochemistry at the edge of a single graphene layer in a nanopore

  Banerjee, S., Shim, J., Rivera, J., Jin, X., Estrada, D., Solovyeva, V., You, X., Pak, J., Pop, E., Aluru, N. & Bashir, R., Jan 22 2013, In: ACS Nano. 7, 1, p. 834-843 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Electrochemistry
  • Graphite
  • electrochemistry
  • Graphene

• Effect of biointerfacing linker chemistries on the sensitivity of silicon nanowires for protein detection

  Dorvel, B., Reddy, B. & Bashir, R., Oct 15 2013, In: Analytical Chemistry. 85, 20, p. 9493-9500 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanowires
  • Silicon
  • Oxides
  • Proteins
  • Polyethylene glycols

• Direct DNA sequencing using nanopore sensors

  Bashir, R., Apr 1 2013, In: Genetic Engineering and Biotechnology News. 33, 7, p. 34-35+45

  Research output: Contribution to journal › Article › peer-review

• Detection of methylation on dsDNA using nanopores in a MoS₂ membrane

  Shim, J., Banerjee, S., Qiu, H., Smithe, K. K. H., Estrada, D., Bello, J., Pop, E., Schulten, K. & Bashir, R., Oct 31 2017, In: Nanoscale. 9, 39, p. 14836-14845 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Methylation
  • Nanopores
  • Membranes
  • DNA
  • Carrier Proteins

• Detection and quantification of methylation in DNA using solid-state nanopores

  Shim, J., Humphreys, G. I., Venkatesan, B. M., Munz, J. M., Zou, X., Sathe, C., Schulten, K., Kosari, F., Nardulli, A. M., Vasmatzis, G. & Bashir, R., 2013, In: Scientific reports. 3, 1389.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • DNA Methylation
  • Methylation
  • Epigenomics
  • 5-Methylcytosine

• Detecting sepsis by observing neutrophil motility

  Hassan, U., Valera, E. & Bashir, R., Apr 1 2018, In: Nature biomedical engineering. 2, 4, p. 197-198 2 p.

  Research output: Contribution to journal › Article › peer-review