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• Writing a review

  Sweedler, J. V., Oct 16 2014, In: Analytical chemistry. 86, 21, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Use the Supporting Information, but Do Not Leave Critical Details out of the Main Manuscript

  Sweedler, J. V., Nov 7 2017, In: Analytical chemistry. 89, 21, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Understanding the impact of fractionation and dynamic exclusion on proteomics

  Zavala, C., Nixon, S., Southey, B. R., Wu, C., Romanova, E. V., Sweedler, J. V. & Rodriguez-Zas, S. L., 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 93-96 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Proteomics
  • Fractionation
  • Proteins
  • Peptides
  • Macrophages

• Transcriptional Orchestration of the Regulated Secretory Pathway in Neurons by the bHLH protein DIMM

  Hamanaka, Y., Park, D., Yin, P., Annangudi, S. P., Edwards, T. N., Sweedler, J., Meinertzhagen, I. A. & Taghert, P. H., Jan 12 2010, In: Current Biology. 20, 1, p. 9-18 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Secretory Pathway
  • neuropeptides
  • Neuropeptides
  • Neurons
  • neurons

• Too busy to review?

  Sweedler, J. V., Jun 3 2014, In: Analytical chemistry. 86, 11, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Three-dimensional mesostructures as high-temperature growth templates, electronic cellular scaffolds, and self-propelled microrobots

  Yan, Z., Han, M., Shi, Y., Badea, A., Yang, Y., Kulkarni, A., Hanson, E., Kandel, M. E., Wen, X., Zhang, F., Luo, Y., Lin, Q., Zhang, H., Guo, X., Huang, Y., Nan, K., Jia, S., Oraham, A. W., Mevis, M. B., Lim, J. & 19 others, Guo, X., Gao, M., Ryu, W., Yu, K. J., Nicolau, B. G., Petronico, A., Rubakhin, S. S., Lou, J., Ajayan, P. M., Thornton, K., Popescu, G., Fang, D., Sweedler, J. V., Braun, P. V., Zhang, H., Nuzzo, R. G., Huang, Y., Zhang, Y. & Rogers, J. A., Nov 7 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 45, p. E9455-E9464

  Research output: Contribution to journal › Article › peer-review

  • elastomeric
  • Temperature
  • Optical Devices
  • Nanostructures
  • Electromagnetic Phenomena

• The zebra finch neuropeptidome: Prediction, detection and expression

  Xie, F., London, S. E., Southey, B. R., Annangudi, S. P., Amare, A., Rodriguez-Zas, S. L., Clayton, D. F. & Sweedler, J. V., Apr 1 2010, In: BMC biology. 8, 28.

  Research output: Contribution to journal › Article › peer-review

  • Finches
  • Taeniopygia guttata
  • Equidae
  • peptide
  • Mass spectrometry

• The Past, Present, and Future of Analytical Chemistry According to Chris Enke

  Sweedler, J. V., Oct 7 2014, In: Analytical chemistry. 86, 19, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• The genome of a songbird

  Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M., Balakrishnan, C. N. & 62 others, Sinha, S., Blatti, C., London, S. E., Li, Y., Lin, Y. C., George, J., Sweedler, J., Southey, B., Gunaratne, P., Watson, M., Nam, K., Backström, N., Smeds, L., Nabholz, B., Itoh, Y., Whitney, O., Pfenning, A. R., Howard, J., Völker, M., Skinner, B. M., Griffin, D. K., Ye, L., McLaren, W. M., Flicek, P., Quesada, V., Velasco, G., Lopez-Otin, C., Puente, X. S., Olender, T., Lancet, D., Smit, A. F. A., Hubley, R., Konkel, M. K., Walker, J. A., Batzer, M. A., Gu, W., Pollock, D. D., Chen, L., Cheng, Z., Eichler, E. E., Stapley, J., Slate, J., Ekblom, R., Birkhead, T., Burke, T., Burt, D., Scharff, C., Adam, I., Richard, H., Sultan, M., Soldatov, A., Lehrach, H., Edwards, S. V., Yang, S. P., Li, X., Graves, T., Fulton, L., Nelson, J., Chinwalla, A., Hou, S., Mardis, E. R. & Wilson, R. K., Apr 1 2010, In: Nature. 464, 7289, p. 757-762 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Finches
  • Songbirds
  • Equidae
  • Genome
  • Molecular Evolution

• The ctenophore genome and the evolutionary origins of neural systems

  Moroz, L. L., Kocot, K. M., Citarella, M. R., Dosung, S., Norekian, T. P., Povolotskaya, I. S., Grigorenko, A. P., Dailey, C., Berezikov, E., Buckley, K. M., Ptitsyn, A., Reshetov, D., Mukherjee, K., Moroz, T. P., Bobkova, Y., Yu, F., Kapitonov, V. V., Jurka, J., Bobkov, Y. V., Swore, J. J. & 16 others, Girardo, D. O., Fodor, A., Gusev, F., Sanford, R., Bruders, R., Kittler, E., Mills, C. E., Rast, J. P., Derelle, R., Solovyev, V. V., Kondrashov, F. A., Swalla, B. J., Sweedler, J. V., Rogaev, E. I., Halanych, K. M. & Kohn, A. B., 2014, In: Nature. 510, 7503, p. 109-114 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Ctenophora
  • Genome
  • Ribes
  • Genes
  • Animals

• The Chemistry of Thought: The Role of the Measurement Sciences in Brain Research

  Andrews, A. M., Bhargava, R., Kennedy, R., Li, L. & Sweedler, J. V., May 2 2017, In: Analytical Chemistry. 89, 9, p. 4757 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• The Analytical Chemistry Virtual Issue Featuring Our Advisory Boards

  Sweedler, J. V., Jul 5 2017, In: Analytical Chemistry. 89, 13, p. 6921 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• The Analytical Chemistry Award Winners

  Sweedler, J. V., Oct 3 2017, In: Analytical chemistry. 89, 19, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• The analytical chemistry advisory boards

  Sweedler, J. V., Jul 1 2014, In: Analytical chemistry. 86, 13, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Synthesis, accumulation, and release of d-aspartate in the Aplysia californica CNS

  Scanlan, C., Shi, T., Hatcher, N. G., Rubakhin, S. S. & Sweedler, J. V., Dec 2010, In: Journal of Neurochemistry. 115, 5, p. 1234-1244 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Aplysia
  • Aspartic Acid
  • Ganglia
  • Neurons
  • Tissue

• Spatial organization of pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy

  Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 5700-5708 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Biofilms
  • Ionization
  • Mass spectrometry
  • Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
  • Desorption

• Spatial correlation of confocal raman scattering and secondary ion mass spectrometric molecular images of lignocellulosic materials

  Li, Z., Chu, L. Q., Sweedler, J. V. & Bohn, P. W., Apr 1 2010, In: Analytical chemistry. 82, 7, p. 2608-2611 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Molecular mass
  • Secondary ion mass spectrometry
  • Raman scattering
  • Ions
  • hemicellulose

• So you want to be a principal investigator?

  Sweedler, J. V., Aug 5 2014, In: Analytical chemistry. 86, 15, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Small-Volume Analysis of Cell-Cell Signaling Molecules in the Brain

  Romanova, E. V., Aerts, J. T., Croushore, C. A. & Sweedler, J. V., Jan 2014, In: Neuropsychopharmacology. 39, 1, p. 50-64 15 p.

  Research output: Contribution to journal › Review article › peer-review

  • Cell Size
  • Brain
  • Nervous System
  • Technology
  • Drug Discovery

• Single Cell Profiling Using Ionic Liquid Matrix-Enhanced Secondary Ion Mass Spectrometry for Neuronal Cell Type Differentiation

  Do, T. D., Comi, T. J., Dunham, S. J. B., Rubakhin, S. S. & Sweedler, J. V., Mar 7 2017, In: Analytical Chemistry. 89, 5, p. 3078-3086 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Ionic Liquids
  • Secondary ion mass spectrometry
  • Phosphatidylcholines
  • Lipids
  • Rats

• Single-Cell Mass Spectrometry

  Knolhoff, A. M., Rubakhin, S. & Sweedler, J. V., Mar 19 2010, Chemical Cytometry: Ultrasensitive Analysis of Single Cells. Wiley-VCH, p. 197-218 22 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Serotonin and its metabolism in basal deuterostomes: Insights from Strongylocentrotus purpuratus and Xenoturbella bocki

  Squires, L. N., Rubakhin, S. S., Wadhams, A. A., Talbot, K. N., Nakano, H., Moroz, L. L. & Sweedler, J. V., Aug 1 2010, In: Journal of Experimental Biology. 213, 15, p. 2647-2654 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Strongylocentrotus purpuratus
  • basal metabolism
  • Basal Metabolism
  • acetic acid
  • serotonin

• Science Communication: A Science Not an Art

  Sweedler, J. V., Mar 7 2017, In: Analytical Chemistry. 89, 5, p. 2645 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Quantitative Reflection Imaging for the Morphology and Dynamics of Live Aplysia californica Pedal Ganglion Neurons Cultured on Nanostructured Plasmonic Crystals

  Kang, S., Badea, A., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A. & Nuzzo, R. G., Sep 5 2017, In: Langmuir. 33, 35, p. 8640-8650 11 p.

  Research output: Contribution to journal › Article › peer-review

  • pedals
  • Plasmonics
  • Polyelectrolytes
  • neurons
  • Crystals

• Quantitative neuroproteomics of the synapse.

  Ramos-Ortolaza, D. L., Bushlin, I., Abul-Husn, N., Annangudi, S. P., Sweedler, J. & Devi, L. A., 2010, In: Methods in molecular biology (Clifton, N.J.). 615, p. 227-246 20 p.

  Research output: Contribution to journal › Article › peer-review

  • Proteomics
  • Synapses
  • Neurodegenerative Diseases
  • Proteins
  • Brain

• Publish only your original research

  Sweedler, J. V., Apr 1 2014, In: Analytical chemistry. 86, 7, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Profiling of Microbial Colonies for High-Throughput Engineering of Multistep Enzymatic Reactions via Optically Guided Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry

  Si, T., Li, B., Comi, T. J., Wu, Y., Hu, P., Wu, Y., Min, Y., Mitchell, D. A., Zhao, H. & Sweedler, J. V., Sep 13 2017, In: Journal of the American Chemical Society. 139, 36, p. 12466-12473 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Ionization
  • Mass spectrometry
  • Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
  • Desorption
  • ionization

• Production of nitric oxide within the aplysia californica nervous system

  Ye, X., Xie, F., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Mar 17 2010, In: ACS Chemical Neuroscience. 1, 3, p. 182-193 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Aplysia
  • Neurology
  • Fluorescence
  • Nervous System
  • Nitric Oxide

• Preface

  Rubakhin, S. & Sweedler, J. V., Dec 1 2010, In: Methods in Molecular Biology. 656

  Research output: Contribution to journal › Article › peer-review

• Prediction and biochemical demonstration of a catabolic pathway for the osmoprotectant proline betaine

  Kumar, R., Zhao, S., Vetting, M. W., Wood, B. M. K., Sakai, A., Cho, K., Solbiati, J., Almo, S. C., Sweedler, J. V., Jacobson, M. P., Gerlt, J. A. & Cronan, J. E., Feb 11 2014, In: mBio. 5, 1, e00933-13.

  Research output: Contribution to journal › Article › peer-review

  • stachydrine
  • Betaine
  • Paracoccus denitrificans
  • Hydroxyproline
  • Metabolomics

• Patch clamp electrophysiology and capillary electrophoresis-mass spectrometry metabolomics for single cell characterization

  Aerts, J. T., Louis, K. R., Crandall, S. R., Govindaiah, G., Cox, C. L. & Sweedler, J. V., Mar 18 2014, In: Analytical Chemistry. 86, 6, p. 3203-3208 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Capillary electrophoresis
  • Metabolomics
  • Electrophysiology
  • Mass spectrometry
  • Clamping devices

• Neuropeptide release is impaired in a mouse model of fragile x mental retardation syndrome

  Annangudi, S. P., Luszpak, A. E., Kim, S. H., Ren, S., Hatcher, N. G., Weiler, I. J., Thornley, K. T., Kile, B. M., Wightman, R. M., Greenough, W. T. & Sweedler, J. V., Apr 21 2010, In: ACS Chemical Neuroscience. 1, 4, p. 306-314 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Fragile X Mental Retardation Protein
  • Neuropeptides
  • Intellectual Disability
  • Fragile X Syndrome
  • Biogenic Amines

• Nanofluidics in chemical analysis

  Piruska, A., Gong, M., Sweedler, J. V. & Bohn, P. W., Feb 24 2010, In: Chemical Society Reviews. 39, 3, p. 1060-1072 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanofluidics
  • Nanopores
  • Chemical analysis
  • Microfluidics
  • Microsensors

• Microscale transport physics during atomic force microscopy mass spectrometry and improved sampling efficiency

  Moon, H., Comi, T. J., Dunham, S. J. B., Kwon, B., Sweedler, J. V. & King, W. P., Jul 26 2017, TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems. Institute of Electrical and Electronics Engineers Inc., p. 24-27 4 p. 7993978. (TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Mass spectrometry
  • Atomic force microscopy
  • microbalances
  • mass spectroscopy
  • Physics

• microMS: A Python Platform for Image-Guided Mass Spectrometry Profiling

  Comi, T. J., Neumann, E. K., Do, T. D. & Sweedler, J. V., Sep 1 2017, In: Journal of the American Society for Mass Spectrometry. 28, 9, p. 1919-1928 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Boidae
  • Mass spectrometry
  • Mass Spectrometry
  • Microscopic examination
  • Microscopy

• Metrics to Evaluate Journals, Scientists, and Science: We Are Not There Yet

  Sweedler, J. V., Jun 6 2017, In: Analytical Chemistry. 89, 11, p. 5653 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Methodologies for metabolomics: Experimental strategies and techniques

  Lutz, N. W., Sweedler, J. V. & Wevers, R. A., Jan 1 2010, Cambridge University Press. 627 p.

  Research output: Book/Report/Conference proceeding › Book

  • Metabolomics
  • Metabolites
  • Metabolic Networks and Pathways
  • Mass spectrometry
  • Metabolism

• Mass spectrometry screening reveals peptides modulated differentially in the medial prefrontal cortex of rats with disparate initial sensitivity to cocaine

  Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Sep 2010, In: AAPS Journal. 12, 3, p. 443-454 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass Screening
  • Cocaine
  • Prefrontal Cortex
  • Mass Spectrometry
  • Peptides

• Mass spectrometry imaging using the stretched sample approach

  Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 465-479 15 p. (Methods in Molecular Biology; vol. 656).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Mass Spectrometry
  • Membranes
  • Lasers
  • Computer-Assisted Image Processing
  • Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry

• Mass spectrometry imaging of complex microbial communities

  Dunham, S. J. B., Ellis, J. F., Li, B. & Sweedler, J. V., Jan 17 2017, In: Accounts of chemical research. 50, 1, p. 96-104 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass spectrometry
  • Imaging techniques
  • Metabolomics
  • Microbiology
  • Metabolites

• Mass Spectrometry Imaging: Principles and Protocols

  Rubakhin, S. (ed.) & Sweedler, J. V. (ed.), 2010, Humana Press. 488 p. (Methods in Molecular Biology; vol. 656)

  Research output: Book/Report/Conference proceeding › Book

  • Mass Spectrometry
  • Xenobiotics
  • Industry
  • Molecular Biology
  • Technology

• Mass spectrometry–based methodologies for single-cell metabolite detection and identification

  Knolhoff, A. M., Nemes, P., Rubakhin, S. & Sweedler, J. V., Jan 1 2010, Methodologies for Metabolomics: Experimental Strategies and Techniques. Cambridge University Press, p. 119-139 21 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Metabolomics
  • Metabolites
  • Fluorescence
  • Neuroglia
  • Tissue

• MALDI MS Guided Liquid Microjunction Extraction for Capillary Electrophoresis-Electrospray Ionization MS Analysis of Single Pancreatic Islet Cells

  Comi, T. J., Makurath, M. A., Philip, M. C., Rubakhin, S. S. & Sweedler, J. V., Jul 18 2017, In: Analytical Chemistry. 89, 14, p. 7765-7772 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Electrospray ionization
  • Capillary electrophoresis
  • Ionization
  • Mass spectrometry
  • Desorption

• MALDI-guided SIMS: Multiscale imaging of metabolites in bacterial biofilms

  Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Aerts, J. T., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 1 2014, In: Analytical Chemistry. 86, 18, p. 9139-9145 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Secondary ion mass spectrometry
  • Metabolites
  • Biofilms
  • Ionization
  • Desorption

• Making the Editor's Job Easier: Let Us Know about Prior Submissions and Related Manuscripts

  Sweedler, J. V., Apr 18 2017, In: Analytical Chemistry. 89, 8, p. 4329 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Improved identification and quantitation of mature endogenous peptides in the rodent hypothalamus using a rapid conductive sample heating system

  Yang, N., Anapindi, K. D. B., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Dec 7 2017, In: Analyst. 142, 23, p. 4476-4485 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Peptides
  • Heating
  • rodent
  • peptide
  • Neuropeptides

• Identification of best indicators of peptide-spectrum match using a permutation resampling approach

  Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 30 2014, In: Journal of Bioinformatics and Computational Biology. 12, 5, 1440001.

  Research output: Contribution to journal › Article › peer-review

  • Peptides
  • Databases
  • Software

• Genome-wide census and expression profiling of chicken neuropeptide and prohormone convertase genes

  Delfino, K. R., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Feb 2010, In: Neuropeptides. 44, 1, p. 31-44 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Proprotein Convertases
  • Censuses
  • Neuropeptides
  • Chickens
  • Genome

• Genome-wide analyses reveal a role for peptide hormones in planarian germline development

  Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A., Oct 2010, In: PLoS biology. 8, 10, e1000509.

  Research output: Contribution to journal › Article › peer-review

  • Planarians
  • Platyhelminths
  • peptide hormones
  • Peptide Hormones
  • Platyhelminthes

• From the Great to the Scam, Carefully Select Your Scientific Conferences

  Sweedler, J. V., Sep 5 2017, In: Analytical Chemistry. 89, 17, p. 8581 1 p.

  Research output: Contribution to journal › Editorial › peer-review