Find Research outputs

Search results

• Writing a review

  Sweedler, J. V., Oct 16 2014, In: Analytical chemistry. 86, 21, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Who Are Your Coauthors? Make Sure to Follow Appropriate Practices

  Sweedler, J. V., Mar 6 2018, In: Analytical Chemistry. 90, 5, p. 2977-2978 2 p.

  Research output: Contribution to journal › Editorial › peer-review

• Where Is the Data?

  Sweedler, J. V., Aug 7 2018, In: Analytical Chemistry. 90, 15, p. 8721 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Where Do Our Manuscripts Come From?

  Sweedler, J. V., Sep 4 2018, In: Analytical Chemistry. 90, 17, p. 10089 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Visualizing the proteome: Mapping protein changes in disease states with mass spectrometry imaging

  Lanni, E. J., Rubakhin, S. & Sweedler, J. V., Mar 2013, In: Journal of Neurochemistry. 124, 5, p. 581-583 3 p.

  Research output: Contribution to journal › Review article › peer-review

• Understanding the impact of fractionation and dynamic exclusion on proteomics

  Zavala, C., Nixon, S., Southey, B. R., Wu, C., Romanova, E. V., Sweedler, J. V. & Rodriguez-Zas, S. L., 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 93-96 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Proteomics
  • Fractionation
  • Proteins
  • Peptides
  • Macrophages

• Transcriptional Orchestration of the Regulated Secretory Pathway in Neurons by the bHLH protein DIMM

  Hamanaka, Y., Park, D., Yin, P., Annangudi, S. P., Edwards, T. N., Sweedler, J., Meinertzhagen, I. A. & Taghert, P. H., Jan 12 2010, In: Current Biology. 20, 1, p. 9-18 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Secretory Pathway
  • neuropeptides
  • Neuropeptides
  • Neurons
  • neurons

• Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms between Mouse Strains

  Davis, R. G., Park, H. M., Kim, K., Greer, J. B., Fellers, R. T., Leduc, R. D., Romanova, E. V., Rubakhin, S. S., Zombeck, J. A., Wu, C., Yau, P. M., Gao, P., Van Nispen, A. J., Patrie, S. M., Thomas, P. M., Sweedler, J. V., Rhodes, J. S. & Kelleher, N. L., Mar 20 2018, In: Analytical Chemistry. 90, 6, p. 3802-3810 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Proteomics
  • Brain
  • Proteome
  • Mass spectrometry
  • cyclic AMP-regulated phosphoprotein ARPP-21

• Too busy to review?

  Sweedler, J. V., Jun 3 2014, In: Analytical chemistry. 86, 11, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Tips on writing a postdoctoral request letter

  Sweedler, J. V., Aug 6 2013, In: Analytical chemistry. 85, 15, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• The zebra finch neuropeptidome: Prediction, detection and expression

  Xie, F., London, S. E., Southey, B. R., Annangudi, S. P., Amare, A., Rodriguez-Zas, S. L., Clayton, D. F. & Sweedler, J. V., Apr 1 2010, In: BMC biology. 8, 28.

  Research output: Contribution to journal › Article › peer-review

  • Finches
  • Taeniopygia guttata
  • Equidae
  • peptide
  • Mass spectrometry

• The Past, Present, and Future of Analytical Chemistry According to Chris Enke

  Sweedler, J. V., Oct 7 2014, In: Analytical chemistry. 86, 19, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• The genome of a songbird

  Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M., Balakrishnan, C. N. & 62 others, Sinha, S., Blatti, C., London, S. E., Li, Y., Lin, Y. C., George, J., Sweedler, J., Southey, B., Gunaratne, P., Watson, M., Nam, K., Backström, N., Smeds, L., Nabholz, B., Itoh, Y., Whitney, O., Pfenning, A. R., Howard, J., Völker, M., Skinner, B. M., Griffin, D. K., Ye, L., McLaren, W. M., Flicek, P., Quesada, V., Velasco, G., Lopez-Otin, C., Puente, X. S., Olender, T., Lancet, D., Smit, A. F. A., Hubley, R., Konkel, M. K., Walker, J. A., Batzer, M. A., Gu, W., Pollock, D. D., Chen, L., Cheng, Z., Eichler, E. E., Stapley, J., Slate, J., Ekblom, R., Birkhead, T., Burke, T., Burt, D., Scharff, C., Adam, I., Richard, H., Sultan, M., Soldatov, A., Lehrach, H., Edwards, S. V., Yang, S. P., Li, X., Graves, T., Fulton, L., Nelson, J., Chinwalla, A., Hou, S., Mardis, E. R. & Wilson, R. K., Apr 1 2010, In: Nature. 464, 7289, p. 757-762 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Finches
  • Songbirds
  • Equidae
  • Genome
  • Molecular Evolution

• The effects of aging on biosynthetic processes in the rat hypothalamic osmoregulatory neuroendocrine system

  Greenwood, M. P., Greenwood, M., Romanova, E. V., Mecawi, A. S., Paterson, A., Sarenac, O., Japundžić-Žigon, N., Antunes-Rodrigues, J., Paton, J. F. R., Sweedler, J. V. & Murphy, D., May 2018, In: Neurobiology of Aging. 65, p. 178-191 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Neurosecretory Systems
  • Arginine Vasopressin
  • Supraoptic Nucleus
  • Dehydration
  • Transcriptome

• The ctenophore genome and the evolutionary origins of neural systems

  Moroz, L. L., Kocot, K. M., Citarella, M. R., Dosung, S., Norekian, T. P., Povolotskaya, I. S., Grigorenko, A. P., Dailey, C., Berezikov, E., Buckley, K. M., Ptitsyn, A., Reshetov, D., Mukherjee, K., Moroz, T. P., Bobkova, Y., Yu, F., Kapitonov, V. V., Jurka, J., Bobkov, Y. V., Swore, J. J. & 16 others, Girardo, D. O., Fodor, A., Gusev, F., Sanford, R., Bruders, R., Kittler, E., Mills, C. E., Rast, J. P., Derelle, R., Solovyev, V. V., Kondrashov, F. A., Swalla, B. J., Sweedler, J. V., Rogaev, E. I., Halanych, K. M. & Kohn, A. B., 2014, In: Nature. 510, 7503, p. 109-114 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Ctenophora
  • Genome
  • Ribes
  • Genes
  • Animals

• The analytical chemistry advisory boards

  Sweedler, J. V., Jul 1 2014, In: Analytical chemistry. 86, 13, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• The ACS Measurement Journals, the Analytical Division, and Pittcon 2018: A Busy Four Days

  Sweedler, J. V., Feb 20 2018, In: Analytical Chemistry. 90, 4, p. 2403 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Synthesis, accumulation, and release of d-aspartate in the Aplysia californica CNS

  Scanlan, C., Shi, T., Hatcher, N. G., Rubakhin, S. S. & Sweedler, J. V., Dec 2010, In: Journal of Neurochemistry. 115, 5, p. 1234-1244 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Aplysia
  • Aspartic Acid
  • Ganglia
  • Neurons
  • Tissue

• Storage and uptake of D-serine into astrocytic synaptic-like vesicles specify gliotransmission

  Martineau, M., Shi, T., Puyal, J., Knolhoff, A. M., Dulong, J., Gasnier, B., Klingauf, J., Sweedler, J. V., Jahn, R. & Mothet, J. P., Feb 20 2013, In: Journal of Neuroscience. 33, 8, p. 3413-3423 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Synaptic Vesicles
  • Glutamic Acid
  • Astrocytes
  • SNARE Proteins
  • Synapses

• Stimulation and release from neurons via a dual capillary collection device interfaced to mass spectrometry

  Fan, Y., Lee, C. Y., Rubakhin, S. S. & Sweedler, J. V., Nov 7 2013, In: Analyst. 138, 21, p. 6337-6346 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Neuropeptides
  • Peptides
  • Mass spectrometry
  • Neurons
  • Mass Spectrometry

• Spatial organization of pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy

  Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 5700-5708 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Biofilms
  • Ionization
  • Mass spectrometry
  • Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
  • Desorption

• Spatially dependent alkyl quinolone signaling responses to antibiotics in Pseudomonas aeruginosa swarms

  Morales-Soto, N., Dunham, S. J. B., Baig, N. F., Ellis, J. F., Madukoma, C. S., Bohn, P. W., Sweedler, J. V. & Shrout, J. D., Jun 15 2018, In: Journal of Biological Chemistry. 293, 24, p. 9544-9552 9 p.

  Research output: Contribution to journal › Article › peer-review

  • 2-heptyl-3-hydroxy-4-quinolone
  • Hydroxyquinolines
  • Quinolones
  • Tobramycin
  • Pseudomonas aeruginosa

• Spatial correlation of confocal raman scattering and secondary ion mass spectrometric molecular images of lignocellulosic materials

  Li, Z., Chu, L. Q., Sweedler, J. V. & Bohn, P. W., Apr 1 2010, In: Analytical chemistry. 82, 7, p. 2608-2611 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Molecular mass
  • Secondary ion mass spectrometry
  • Raman scattering
  • Ions
  • hemicellulose

• So you want to be a principal investigator?

  Sweedler, J. V., Aug 5 2014, In: Analytical chemistry. 86, 15, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Small-Volume Analysis of Cell-Cell Signaling Molecules in the Brain

  Romanova, E. V., Aerts, J. T., Croushore, C. A. & Sweedler, J. V., Jan 2014, In: Neuropsychopharmacology. 39, 1, p. 50-64 15 p.

  Research output: Contribution to journal › Review article › peer-review

  • Cell Size
  • Brain
  • Nervous System
  • Technology
  • Drug Discovery

• Single Synaptic Observation of Cholinergic Neurotransmission on Living Neurons: Concentration and Dynamics

  Shen, M., Qu, Z., Deslaurier, J., Welle, T. M., Sweedler, J. V. & Chen, R., Jun 27 2018, In: Journal of the American Chemical Society. 140, 25, p. 7764-7768 5 p.

  Research output: Contribution to journal › Article › peer-review

  • in situ measurement
  • Synaptic Transmission
  • Cholinergic Agents
  • Acetylcholine
  • Neurons

• Single Cell Neurometabolomics

  Qi, M., Philip, M. C., Yang, N. & Sweedler, J. V., Jan 17 2018, In: ACS Chemical Neuroscience. 9, 1, p. 40-50 11 p.

  Research output: Contribution to journal › Review article › peer-review

  • Metabolomics
  • Molecules
  • Astrocytes
  • Brain
  • Metabolites

• Single-Cell Mass Spectrometry

  Knolhoff, A. M., Rubakhin, S. & Sweedler, J. V., Mar 19 2010, Chemical Cytometry: Ultrasensitive Analysis of Single Cells. Wiley-VCH, p. 197-218 22 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Signals from the Brainstem Sleep/Wake Centers Regulate Behavioral Timing via the Circadian Clock

  Abbott, S. M., Arnold, J. M., Chang, Q., Miao, H., Ota, N., Cecala, C., Gold, P. E., Sweedler, J. V. & Gillette, M. U., Aug 12 2013, In: PloS one. 8, 8, e70481.

  Research output: Contribution to journal › Article › peer-review

  • Suprachiasmatic Nucleus
  • Circadian Clocks
  • brain stem
  • circadian clocks
  • sleep

• Serotonin and its metabolism in basal deuterostomes: Insights from Strongylocentrotus purpuratus and Xenoturbella bocki

  Squires, L. N., Rubakhin, S. S., Wadhams, A. A., Talbot, K. N., Nakano, H., Moroz, L. L. & Sweedler, J. V., Aug 1 2010, In: Journal of Experimental Biology. 213, 15, p. 2647-2654 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Strongylocentrotus purpuratus
  • basal metabolism
  • Basal Metabolism
  • acetic acid
  • serotonin

• Science Research - Looking in the Mirror

  Sweedler, J. V., Nov 6 2018, In: Analytical Chemistry. 90, 21, p. 12323-12324 2 p.

  Research output: Contribution to journal › Editorial › peer-review

• Reflections from my first year

  Sweedler, J. V., Jan 2 2013, In: Analytical chemistry. 85, 1, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Rapid Screening of Lanthipeptide Analogs via In-Colony Removal of Leader Peptides in Escherichia coli

  Si, T., Tian, Q., Min, Y., Zhang, L., Sweedler, J. V., Van Der Donk, W. A. & Zhao, H., Sep 26 2018, In: Journal of the American Chemical Society. 140, 38, p. 11884-11888 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Protein Sorting Signals
  • Escherichia coli
  • peptide
  • Screening
  • screening

• Quantitative SIMS Imaging of Agar-Based Microbial Communities

  Dunham, S. J. B., Ellis, J. F., Baig, N. F., Morales-Soto, N., Cao, T., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., May 1 2018, In: Analytical Chemistry. 90, 9, p. 5654-5663 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Secondary ion mass spectrometry
  • Agar
  • Imaging techniques
  • Biofilms
  • Ions

• Quantitative reflection imaging of fixed aplysia californica pedal ganglion neurons on nanostructured plasmonic crystals

  Le, A. P., Kang, S., Thompson, L. B., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A. & Nuzzo, R. G., Nov 4 2013, In: Journal of Physical Chemistry B. 117, 42, p. 13069-13081 13 p.

  Research output: Contribution to journal › Article › peer-review

  • pedals
  • Surface plasmon resonance
  • Plasmonics
  • neurons
  • Crystals

• Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus

  Lee, J. E., Zamdborg, L., Southey, B. R., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Feb 1 2013, In: Journal of Proteome Research. 12, 2, p. 585-593 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Suprachiasmatic Nucleus
  • Rats
  • Peptides
  • Mammals
  • Optic Chiasm

• Quantitative neuroproteomics of the synapse.

  Ramos-Ortolaza, D. L., Bushlin, I., Abul-Husn, N., Annangudi, S. P., Sweedler, J. & Devi, L. A., 2010, In: Methods in molecular biology (Clifton, N.J.). 615, p. 227-246 20 p.

  Research output: Contribution to journal › Article › peer-review

  • Proteomics
  • Synapses
  • Neurodegenerative Diseases
  • Proteins
  • Brain

• Quantitation of endogenous peptides using mass spectrometry based methods

  Romanova, E. V., Dowd, S. E. & Sweedler, J. V., Oct 2013, In: Current Opinion in Chemical Biology. 17, 5, p. 801-808 8 p.

  Research output: Contribution to journal › Review article › peer-review

  • Mass spectrometry
  • Mass Spectrometry
  • Peptides
  • Molecular interactions
  • Industrial Development

• Qualitative and quantitative metabolomic investigation of single neurons by capillary electrophoresis electrospray ionization mass spectrometry

  Nemes, P., Rubakhin, S. S., Aerts, J. T. & Sweedler, J. V., Apr 2013, In: Nature Protocols. 8, 4, p. 783-799 17 p.

  Research output: Contribution to journal › Article › peer-review

  • Electrospray ionization
  • Capillary electrophoresis
  • Metabolomics
  • Electrospray Ionization Mass Spectrometry
  • Capillary Electrophoresis

• Publish only your original research

  Sweedler, J. V., Apr 1 2014, In: Analytical chemistry. 86, 7, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Progress toward single cell metabolomics

  Rubakhin, S. S., Lanni, E. J. & Sweedler, J. V., Feb 2013, In: Current Opinion in Biotechnology. 24, 1, p. 95-104 10 p.

  Research output: Contribution to journal › Review article › peer-review

  • Metabolomics
  • Metabolites
  • Molecules
  • Mass spectrometry
  • Microfluidics

• Production of nitric oxide within the aplysia californica nervous system

  Ye, X., Xie, F., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Mar 17 2010, In: ACS Chemical Neuroscience. 1, 3, p. 182-193 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Aplysia
  • Neurology
  • Fluorescence
  • Nervous System
  • Nitric Oxide

• Preface

  Rubakhin, S. & Sweedler, J. V., Dec 1 2010, In: Methods in Molecular Biology. 656

  Research output: Contribution to journal › Article › peer-review

• Prediction and biochemical demonstration of a catabolic pathway for the osmoprotectant proline betaine

  Kumar, R., Zhao, S., Vetting, M. W., Wood, B. M. K., Sakai, A., Cho, K., Solbiati, J., Almo, S. C., Sweedler, J. V., Jacobson, M. P., Gerlt, J. A. & Cronan, J. E., Feb 11 2014, In: mBio. 5, 1, e00933-13.

  Research output: Contribution to journal › Article › peer-review

  • stachydrine
  • Betaine
  • Paracoccus denitrificans
  • Hydroxyproline
  • Metabolomics

• Pittcon: Still vibrant after more than 60 years

  Sweedler, J. V., Mar 5 2013, In: Analytical chemistry. 85, 5, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Peptide identifications and false discovery rates using different mass spectrometry platforms

  Anapindi, K. D. B., Romanova, E. V., Southey, B. R. & Sweedler, J. V., May 15 2018, In: Talanta. 182, p. 456-463 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass spectrometry
  • Peptides
  • Neuropeptides
  • Protein Precursors
  • Bioinformatics

• Patch clamp electrophysiology and capillary electrophoresis-mass spectrometry metabolomics for single cell characterization

  Aerts, J. T., Louis, K. R., Crandall, S. R., Govindaiah, G., Cox, C. L. & Sweedler, J. V., Mar 18 2014, In: Analytical Chemistry. 86, 6, p. 3203-3208 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Capillary electrophoresis
  • Metabolomics
  • Electrophysiology
  • Mass spectrometry
  • Clamping devices

• Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins

  Do, T. D., Ellis, J. F., Neumann, E. K., Comi, T. J., Tillmaand, E. G., Lenhart, A. E., Rubakhin, S. S. & Sweedler, J. V., May 22 2018, In: ChemPhysChem. 19, 10, p. 1180-1191 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass spectrometry
  • Rats
  • peptides
  • rats
  • lipids

• Non-targeted identification of d-amino acid-containing peptides through enzymatic screening, chiral amino acid analysis, and LC-MS

  Tai, H. C., Checco, J. W. & Sweedler, J. V., 2018, Methods in Molecular Biology. Humana Press Inc., p. 107-118 12 p. (Methods in Molecular Biology; vol. 1719).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Amino Acids
  • Peptides
  • Post Translational Protein Processing
  • Mass Spectrometry
  • Animals

• New Mass Spectrometric Approaches for Uncovering Neuropeptides

  Hou, X. & Sweedler, J. V., Aug 29 2013, Handbook of Biologically Active Peptides. Elsevier Inc., p. 1749-1756 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter