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• Mobile Platform for Multiplexed Detection and Differentiation of Disease-Specific Nucleic Acid Sequences, Using Microfluidic Loop-Mediated Isothermal Amplification and Smartphone Detection

  Chen, W., Yu, H., Sun, F., Ornob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Nov 7 2017, In: Analytical chemistry. 89, 21, p. 11219-11226 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nucleic acid sequences
  • Pathogens
  • Microfluidics
  • Amplification
  • Smartphones

• Modeling and Analysis of Intercalant Effects on Circular DNA Conformation

  Krueger, E., Shim, J., Fathizadeh, A., Chang, A. N., Subei, B., Yocham, K. M., Davis, P. H., Graugnard, E., Khalili-Araghi, F., Bashir, R., Estrada, D. & Fologea, D., Sep 27 2016, In: ACS Nano. 10, 9, p. 8910-8917 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Circular DNA
  • Conformations
  • DNA
  • deoxyribonucleic acid
  • Nanopores

• Multi-material bio-fabrication of hydrogel cantilevers and actuators with stereolithography

  Chan, V., Jeong, J. H., Bajaj, P., Collens, M., Saif, T., Kong, H. & Bashir, R., Jan 7 2012, In: Lab on a chip. 12, 1, p. 88-98 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Hydrogels
  • poly(ethylene glycol)diacrylate
  • Polyethylene glycols
  • Polyethylene Glycol Dimethacrylate Hydrogel

• Multiplexed detection of infectious diseases with microfluidic loop-mediated isothermal amplification and a smartphone

  Sun, F., Chen, W., Yu, H., Omob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Dec 19 2017, 2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017. Institute of Electrical and Electronics Engineers Inc., p. 241-244 4 p. (2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017; vol. 2017-December).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • pathogens
  • Pathogens
  • infectious diseases
  • Smartphone
  • Microfluidics

• Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

  Hassan, U., Zhu, R. & Bashir, R., Apr 21 2018, In: Lab on a chip. 18, 8, p. 1231-1240 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Biosensing Techniques
  • Biosensors
  • Sepsis
  • Multivariate Analysis
  • Systemic Inflammatory Response Syndrome

• Nanopore sensors for DNA analysis

  Solovyeva, V., Venkatesan, B. M., Shim, J., Banerjee, S., Rivera, J. & Bashir, R., Jul 23 2012, Micro- and Nanotechnology Sensors, Systems, and Applications IV. 83730O. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8373).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nanopore
  • Nanopores
  • Sensor
  • DNA
  • deoxyribonucleic acid

• On-chip electrical detection of parallel loop-mediated isothermal amplification with DG-BioFETs for the detection of foodborne bacterial pathogens

  Duarte-Guevara, C., Swaminathan, V. V., Reddy, B., Huang, J. C., Liu, Y. S. & Bashir, R., Jan 1 2016, In: RSC Advances. 6, 106, p. 103872-103887 16 p.

  Research output: Contribution to journal › Article › peer-review

  • Pathogens
  • Amplification
  • Assays
  • Gold
  • Nucleic acids

• On-chip PMA labeling of foodborne pathogenic bacteria for viable qPCR and qLAMP detection

  Duarte-Guevara, P., Duarte-Guevara, C., Ornob, A. & Bashir, R., Aug 1 2016, In: Microfluidics and Nanofluidics. 20, 8, 114.

  Research output: Contribution to journal › Article › peer-review

  • propidium monoazide
  • Bacteria
  • bacteria
  • marking
  • Labeling

• Optogenetic skeletal muscle-powered adaptive biological machines

  Raman, R., Cvetkovic, C., Uzel, S. G. M., Platt, R. J., Sengupta, P., Kamm, R. D. & Bashir, R., Mar 29 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 13, p. 3497-3502 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Bioengineering
  • Skeleton
  • Locomotion
  • Skeletal Muscle

• Optomechanical microrheology of single adherent cancer cells

  Adeniba, O. O., Corbin, E. A., Ewoldt, R. H. & Bashir, R., Mar 1 2018, In: APL Bioengineering. 2, 1, 016108.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cells
  • Viscoelastic Substances
  • Cell membranes
  • Soft materials
  • Mechanical properties

• Perspective: The promise of multi-cellular engineered living systems

  Kamm, R. D., Bashir, R., Arora, N., Dar, R. D., Gillette, M. U., Griffith, L. G., Kemp, M. L., Kinlaw, K., Levin, M., Martin, A. C., McDevitt, T. C., Nerem, R. M., Powers, M. J., Saif, T. A., Sharpe, J., Takayama, S., Takeuchi, S., Weiss, R., Ye, K., Yevick, H. G. & 1 others, Zaman, M. H., Dec 1 2018, In: APL Bioengineering. 2, 4, 040901.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Bioprinting
  • Cytology
  • Stem cells
  • Organoids
  • Assays

• Pixelated spatial gene expression analysis from tissue

  Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In: Nature communications. 9, 1, 202.

  Research output: Contribution to journal › Article › peer-review

  • gene expression
  • Gene expression
  • Tissue
  • ribonucleic acids
  • Amplification

• Point-of-care sensors for the management of sepsis

  Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In: Nature biomedical engineering. 2, 9, p. 640-648 9 p.

  Research output: Contribution to journal › Review article › peer-review

  • Point-of-Care Systems
  • Sepsis
  • Health
  • Sensors
  • Infection

• Resonant MEMS mass sensors for measurement of microdroplet evaporation

  Park, K., Kim, N., Morisette, D. T., Aluru, N. R. & Bashir, R., 2012, In: Journal of Microelectromechanical Systems. 21, 3, p. 702-711 10 p., 6176181.

  Research output: Contribution to journal › Article › peer-review

  • Evaporation
  • MEMS
  • Sensors
  • Dimethyl sulfoxide
  • Self assembly

• Robust label-free microRNA detection using one million ISFET array

  Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In: Biomedical microdevices. 20, 2, 1 p.

  Research output: Contribution to journal › Article › peer-review

  • Ion sensitive field effect transistors
  • Nucleic acids
  • Assays
  • Nucleic Acids
  • Molecules

• Silicon nanowires with high-k hafnium oxide dielectrics for sensitive detection of small nucleic acid oligomers

  Dorvel, B. R., Reddy, B., Go, J., Duarte Guevara, C., Salm, E., Alam, M. A. & Bashir, R., Jul 24 2012, In: ACS Nano. 6, 7, p. 6150-6164 15 p.

  Research output: Contribution to journal › Article › peer-review

  • hafnium oxide
  • Hafnium oxides
  • Nucleic acids
  • Oligomers
  • hafnium oxides

• Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines

  Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In: Advanced Functional Materials. 28, 23, 1801145.

  Research output: Contribution to journal › Article › peer-review

  • walking machines
  • Scaffolds
  • Tissue
  • Robotics
  • Actuators

• Stacked graphene-Al ₂O ₃ nanopore sensors for sensitive detection of DNA and DNA-protein complexes

  Venkatesan, B. M., Estrada, D., Banerjee, S., Jin, X., Dorgan, V. E., Bae, M. H., Aluru, N. R., Pop, E. & Bashir, R., Jan 24 2012, In: ACS Nano. 6, 1, p. 441-450 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Graphite
  • Graphene
  • DNA
  • Proteins