Find Research outputs

Search results

• Transcriptional analysis of Clostridium beijerinckii NCIMB 8052 and the hyper-butanol-producing mutant BA101 during the shift from acidogenesis to solventogenesis

  Shi, Z. & Blaschek, H. P., Dec 2008, In: Applied and environmental microbiology. 74, 24, p. 7709-7714 6 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional analysis of essential genes of the Escherichia coli fatty acid biosynthesis gene cluster by functional replacement with the analogous Salmonella typhimurium gene cluster

  Zhang, Y. & Cronan, J. E., Jul 1998, In: Journal of bacteriology. 180, 13, p. 3295-3303 9 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome

  Radwan, O., Liu, Y. & Clough, S. J., Aug 2011, In: Molecular Plant-Microbe Interactions. 24, 8, p. 958-972 15 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional analysis of sweet corn hybrids in response to crowding stress

  Choe, E., Ko, Y. & Williams, M. M., Jun 2021, In: PloS one. 16, 6 June, e0253190.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional analysis of the Clostridium cellulovorans endoglucanase gene, engB

  Attwood, G. T., Blaschek, H. P. & White, B. A., Dec 15 1994, In: FEMS microbiology letters. 124, 3, p. 277-284 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional and small RNA responses of the white mold fungus sclerotinia sclerotiorum to infection by a virulence-attenuating hypovirus

  Marzano, S. Y. L., Neupane, A. & Domier, L., Dec 2018, In: Viruses. 10, 12, 713.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional burst frequency and burst size are equally modulated across the human genome

  Dar, R. D., Razooky, B. S., Singh, A., Trimeloni, T. V., McCollum, J. M., Cox, C. D., Simpson, M. L. & Weinberger, L. S., Oct 23 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 43, p. 17454-17459 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional bursting explains the noise-versus-mean relationship in mRNA and protein levels

  Dar, R. D., Shaffer, S. M., Singh, A., Razooky, B. S., Simpson, M. L., Raj, A. & Weinberger, L. S., Jul 2016, In: PloS one. 11, 7, e0158298.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional changes in macrophage TNF-α expression following dimethylnitrosamine exposure in vivo

  Lockwood, J. F., Myers, M. J., Rutherford, M. S. & Schook, L. B., 1991, In: Immunopharmacology. 22, 1, p. 27-37 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional changes in mesenteric and subcutaneous adipose tissue from Holstein cows in response to plane of dietary energy

  Moisá, S. J., Ji, P., Drackley, J. K., Rodriguez-Zas, S. L. & Loor, J. J., Dec 4 2017, In: Journal of Animal Science and Biotechnology. 8, 1, 85.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional Control of the Human Sodium-coupled Neutral Amino Acid Transporter System A Gene by Amino Acid Availability Is Mediated by an Intronic Element

  Palii, S. S., Chen, H. & Kilberg, M. S., Jan 30 2004, In: Journal of Biological Chemistry. 279, 5, p. 3463-3471 9 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional cross talk within the Mar-Sox-Rob regulon in Escherichia coli is limited to the rob and marRAB operons

  Chubiz, L. M., Glekas, G. D. & Rao, C. V., Sep 2012, In: Journal of bacteriology. 194, 18, p. 4867-4875 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional Immune Signatures of Alveolar Macrophages and the Impact of the NLRP3 Inflammasome on Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Replication

  Hicks, J. A., Yoo, D. & Liu, H-C., Nov 12 2020, In: Viruses. 12, 11, 1299.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional interactions between yeast tRNA genes, flanking genes and Ty elements: A genomic point of view

  Bolton, E. C. & Boeke, J. D., Feb 1 2003, In: Genome Research. 13, 2, p. 254-263 10 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional Orchestration of the Regulated Secretory Pathway in Neurons by the bHLH protein DIMM

  Hamanaka, Y., Park, D., Yin, P., Annangudi, S. P., Edwards, T. N., Sweedler, J., Meinertzhagen, I. A. & Taghert, P. H., Jan 12 2010, In: Current Biology. 20, 1, p. 9-18 10 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional organization of a cloned chemotaxis locus of Bacillus subtilis

  Zuberi, A. R., Ying, C., Weinreich, M. R. & Ordal, G. W., 1990, In: Journal of bacteriology. 172, 4, p. 1870-1876 7 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis

  Wier, A. M., Nyholm, S. V., Mandel, M. J., Massengo-Tiassé, R. P., Schaefer, A. L., Koroleva, I., Splinter-BonDurant, S., Brown, B., Manzella, L., Snir, E., Almabrazi, H., Scheetz, T. E., Bonaldo, M. D. F., Casavant, T. L., Soares, M. B., Cronan, J. E., Reed, J. L., Ruby, E. G. & McFall-Ngai, M. J., Feb 2 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 5, p. 2259-2264 6 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional profiling and metabolomic analysis of Staphylococcus aureus grown on autoclaved chicken breast

  Dupre, J. M., Johnson, W. L., Ulanov, A. V., Li, Z., Wilkinson, B. J. & Gustafson, J. E., Sep 2019, In: Food Microbiology. 82, p. 46-52 7 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional profiling of estrogen-regulated gene expression via estrogen receptor (ER) α or ERβ in human osteosarcoma cells: Distinct and common target genes for these receptors

  Stossi, F., Barnett, D. H., Frasor, J., Komm, B., Lyttle, C. R. & Katzenellenbogen, B. S., Jul 2004, In: Endocrinology. 145, 7, p. 3473-3486 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional Profiling of Porcine HCC Xenografts Provides Insights Into Tumor Cell Microenvironment Signaling

  Patel, S. S., Sandur, A., El-Kebir, M., Gaba, R. C., Schook, L. B. & Schachtschneider, K. M., Apr 29 2021, In: Frontiers in Genetics. 12, 657330.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional profiling of swine mammary gland during the transition from colostrogenesis to lactogenesis using RNA sequencing

  Palombo, V., Loor, J. J., D'Andrea, M., Vailati-Riboni, M., Shahzad, K., Krogh, U. & Theil, P. K., May 3 2018, In: BMC genomics. 19, 1, 322.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional profiling of the spleen in progressive visceral leishmaniasis reveals mixed expression of type 1 and type 2 cytokine-responsive genes

  Espitia, C. M., Saldarriaga, O. A., Travi, B. L., Osorio, E. Y., Hernandez, A., Band, M., Patel, M. J., Medina, A. A., Cappello, M., Pekosz, A. & Melby, P. C., Nov 26 2014, In: BMC Immunology. 15, 1, 38.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional profiling reveals elevated CO₂ and elevated O₃ alter resistance of soybean (Glycine max) to Japanese beetles (Popillia japonica)

  Casteel, C. L., O'Neill, B. F., Zavala, J. A., Bilgin, D. D., Berenbaum, M. R. & DeLucia, E. H., Apr 2008, In: Plant, Cell and Environment. 31, 4, p. 419-434 16 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional profiling reveals molecular basis and novel genetic targets for improved resistance to multiple fermentation inhibitors in Saccharomyces cerevisiae

  Chen, Y., Sheng, J., Jiang, T., Stevens, J., Feng, X. & Wei, N., Jan 13 2016, In: Biotechnology for Biofuels. 9, 1, 418.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution

  Cheng, J. B., Sedgewick, A. J., Finnegan, A. I., Harirchian, P., Lee, J., Kwon, S., Fassett, M. S., Golovato, J., Gray, M., Ghadially, R., Liao, W., Perez White, B. E., Mauro, T. M., Mully, T., Kim, E. A., Sbitany, H., Neuhaus, I. M., Grekin, R. C., Yu, S. S., Gray, J. W., & 6 othersPurdom, E., Paus, R., Vaske, C. J., Benz, S. C., Song, J. S. & Cho, R. J., Oct 23 2018, In: Cell Reports. 25, 4, p. 871-883 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional regulation by the numbers: Applications

  Bintu, L., Buchler, N. E., Garcia, H. G., Gerland, U., Hwa, T., Kondev, J., Kuhlman, T. & Phillips, R., Apr 2005, In: Current Opinion in Genetics and Development. 15, 2, p. 125-135 11 p.

  Research output: Contribution to journal › Review article › peer-review

• Transcriptional regulation of alcohol induced liver fibrosis in a translational porcine hepatocellular carcinoma model

  Yasmin, A., Regan, D. P., Schook, L. B., Gaba, R. C. & Schachtschneider, K. M., Mar 2021, In: Biochimie. 182, p. 73-84 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional regulation of Arabidopsis thaliana phytochelatin synthase (AtPCS1) by cadmium during early stages of plant development

  Lee, S. & Korban, S. S., 2002, In: Planta. 215, 4, p. 689-693 5 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of autophagy by an FXR-CREB axis

  Seok, S., Fu, T., Choi, S. E., Li, Y., Zhu, R., Kumar, S., Sun, X., Yoon, G., Kang, Y., Zhong, W., Ma, J., Kemper, B. & Kemper, J. K., Dec 4 2014, In: Nature. 516, 729, p. 108-111 4 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of brain gene expression in response to a territorial intrusion

  Sanogo, Y. O., Band, M., Blatti, C., Sinha, S. & Bell, A. M., 2012, In: Proceedings of the Royal Society B: Biological Sciences. 279, 1749, p. 4929-4938 10 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of dosage compensation in Carica papaya

  Liu, J., Han, J., Sharma, A., Wai, C. M., Ming, R. & Yu, Q., Dec 2021, In: Scientific reports. 11, 1, 5854.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional regulation of fatty acid cis–trans isomerization in the solvent-tolerant soil bacterium, Pseudomonas putida F1

  Kondakova, T. & Cronan, J. E., May 2019, In: Environmental Microbiology. 21, 5, p. 1659-1676 18 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of puc operon expression in Rhodobacter sphaeroides. Involvement of an integration host factor-binding sequence

  Lee, J. K., Wang, S., Eraso, J. M., Gardner, J. & Kaplan, S., 1993, In: Journal of Biological Chemistry. 268, 32, p. 24491-24497 7 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR and Fur

  Ikeda, J. S., Janakiraman, A., Kehres, D. G., Maguire, M. E. & Slauch, J. M., Feb 2005, In: Journal of bacteriology. 187, 3, p. 912-922 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of spatiotemporal gene expression within the seminiferous epithelium: Mouse Acrv1 gene as a model

  Reddi, P. P., Jul 2023, In: Andrology. 11, 5, p. 904-910 7 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• Transcriptional regulation of spermiogenesis: Insights from the study of the gene encoding the acrosomal protein SP-10

  Reddi, P. P., Shore, A. N., Acharya, K. K. & Herr, J. C., 2002, In: Journal of Reproductive Immunology. 53, 1-2, p. 25-36 12 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of the human quinone reductase gene by antiestrogen-liganded estrogen receptor-α and estrogen receptor-β

  Montano, M. M., Jaiswal, A. K. & Katzenellenbogen, B. S., Sep 25 1998, In: Journal of Biological Chemistry. 273, 39, p. 25443-25449 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional regulation of the novel toll-like receptor Tlr13

  Shi, Z., Cai, Z., Wen, S., Chen, C., Gendron, C., Sanchez, A., Patterson, K., Fu, S., Yang, J., Wildman, D., Finnell, R. H. & Zhang, D., Jul 31 2009, In: Journal of Biological Chemistry. 284, 31, p. 20540-20547 8 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of the Papilio polyxenes CYP6B1 gene

  Prapaipong, H., Berenbaum, M. R. & Schuler, M. A., Aug 11 1994, In: Nucleic acids research. 22, 15, p. 3210-3217 8 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional Regulation of the Tumor Necrosis Factor α Gene

  Jongeneel, C. V., 1995, In: Immunobiology. 193, 2-4, p. 210-216 7 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulator Id2 is required for the CD4 T cell immune response in the development of experimental autoimmune encephalomyelitis

  Lin, Y. Y., Jones-Mason, M. E., Inoue, M., Lasorella, A., Iavarone, A., Li, Q. J., Shinohara, M. L. & Zhuang, Y., Aug 1 2012, In: Journal of Immunology. 189, 3, p. 1400-1405 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice

  Saul, M. C., Seward, C. H., Troy, J. M., Zhang, H., Sloofman, L. G., Lu, X., Weisner, P. A., Caetano-Anolles, D., Sun, H., Zhao, S. D., Chandrasekaran, S., Sinha, S. & Stubbs, L., Jun 2017, In: Genome Research. 27, 6, p. 959-972 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional regulatory elements for basal expression of cytochrome P450IIC genes

  Venepally, P., Chen, D. & Kemper, B., Aug 25 1992, In: Journal of Biological Chemistry. 267, 24, p. 17333-17338 6 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional reprogramming and stimulation of leaf respiration by elevated CO₂ concentration is diminished, but not eliminated, under limiting nitrogen supply

  Markelz, R. J. C., Lai, L. X., Vosseler, L. N. & Leakey, A. D. B., Apr 2014, In: Plant, Cell and Environment. 37, 4, p. 886-898 13 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional response elements in the promoter of CYP6B1, an insect P450 gene regulated by plant chemicals

  Petersen, R. A., Niamsup, H., Berenbaum, M. R. & Schuler, M. A., Feb 17 2003, In: Biochimica et Biophysica Acta - General Subjects. 1619, 3, p. 269-282 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional responses indicate maintenance of photosynthetic proteins as key to the exceptional chilling tolerance of C₄ photosynthesis in Miscanthus × giganteus

  Spence, A. K., Boddu, J., Wang, D., James, B., Swaminathan, K., Moose, S. P. & Long, S. P., Jul 2014, In: Journal of experimental botany. 65, 13, p. 3737-3747 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional responses to sucrose mimic the plant-associated life style of the plant growth promoting endophyte enterobacter sp. 638

  Taghavi, S., Wu, X., Ouyang, L., Zhang, Y. B., Stadler, A., McCorkle, S., Zhu, W., Maslov, S. & Van Der Lelie, D., Jan 21 2015, In: PloS one. 10, 1, e0115455.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional response to foraging experience in the honey bee mushroom bodies

  Lutz, C. C., Rodriguez-Zas, S. L., Fahrbach, S. E. & Robinson, G. E., Feb 2012, In: Developmental Neurobiology. 72, 2, p. 153-166 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional signatures in response to wheat germ agglutinin and starvation in Drosophila melanogaster larval midgut

  Li, H. M., Sun, L., Mittapalli, O., Muir, W. M., Xie, J., Wu, J., Schemerhorn, B. J., Sun, W., Pittendrigh, B. R. & Murdock, L. L., Feb 2009, In: Insect Molecular Biology. 18, 1, p. 21-31 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional silencing by unliganded thyroid hormone receptor β requires a soluble corepressor that interacts with the ligand-binding domain of the receptor

  Tong, G. X., Jeyakumar, M., Tanen, M. R. & Bagchi, M. K., May 1996, In: Molecular and cellular biology. 16, 5, p. 1909-1920 12 p.

  Research output: Contribution to journal › Article › peer-review