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2020
RT-LAMP assay for ultra-sensitive detection of SARS-CoV-2 in saliva and VTM clinical samples
Ganguli, A., Mostafa, A., Berger, J., Stewart de Ramirez, S. A., Baltaji, A., Roth, K., Aamir, M., Aedma, S., Mady, M., Mahajan, P., Sathe, S., Johnson, M., White, K., Kumar, J., Valera, E. & Bashir, R., Nov 18 2020, (In preparation) Cold Spring Harbor Laboratory Press, 23 p. (medRxiv).Research output: Working paper
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2012
Integrated 'lab-on-a-transistor': With droplets-in-air for parallel nanoliter reactions
Salm, E., Duarte, C., Jokilaakso, N. & Bashir, R., Jan 1 2012, Proceedings of the 16th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2012. Chemical and Biological Microsystems Society, p. 1945-1947 3 p. (Proceedings of the 16th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2012).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2018
Mobile biosensing using the sensing capabilities of smartphone cameras
Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., Ganguli, A., Lumetta, S. & Bashir, R., Jan 4 2018, 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; vol. 2018-January).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2012
Electrical flow metering of blood for point-of-care diagnostics
Watkins, N., Hassan, U., Rodriguez, W. & Bashir, R., Dec 14 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 3255-3257 3 p. 6346659. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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3-D biofabrication using stereolithography for biology and medicine
Bajaj, P., Chan, V., Jeong, J. H., Zorlutuna, P., Kong, H. & Bashir, R., Dec 14 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 6805-6808 4 p. 6347557. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2013
3D fabrication of biological machines
Chan, V., Kong, H. J. & Bashir, R., Oct 31 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 314-317 4 p. 6609500. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2018
Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines
Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In: Advanced Functional Materials. 28, 23, 1801145.Research output: Contribution to journal › Article › peer-review
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2013
Electrochemistry at the edge of a single graphene layer in a nanopore
Banerjee, S., Shim, J., Rivera, J., Jin, X., Estrada, D., Solovyeva, V., You, X., Pak, J., Pop, E., Aluru, N. & Bashir, R., Jan 22 2013, In: ACS Nano. 7, 1, p. 834-843 10 p.Research output: Contribution to journal › Article › peer-review
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2015
Microfluidics and Nanotechnology for Detection of Global Infectious Diseases
Damhorst, G. L., Murtagh, M., Rodriguez, W. R. & Bashir, R., Feb 1 2015, In: Proceedings of the IEEE. 103, 2, p. 150-160 11 p., 7067024.Research output: Contribution to journal › Review article › peer-review
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2019
Smartphone-imaged microfluidic biochip for measuring CD64 expression from whole blood
Ghonge, T., Ceylan Koydemir, H., Valera, E., Berger, J., Garcia, C., Nawar, N., Tiao, J., Damhorst, G. L., Ganguli, A., Hassan, U., Ozcan, A. & Bashir, R., Jul 7 2019, In: Analyst. 144, 13, p. 3925-3935 11 p.Research output: Contribution to journal › Article › peer-review
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2012
Label-free electrical detection of pyrophosphate generated from DNA polymerase reactions on field-effect devices
Credo, G. M., Su, X., Wu, K., Elibol, O. H., Liu, D. J., Reddy, B., Tsai, T. W., Dorvel, B. R., Daniels, J. S., Bashir, R. & Varma, M., Mar 21 2012, In: Analyst. 137, 6, p. 1351-1362 12 p.Research output: Contribution to journal › Article › peer-review
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2019
Monolayer MoS 2 Nanoribbon Transistors Fabricated by Scanning Probe Lithography
Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., Van Der Zande, A. M. & King, W. P., Mar 13 2019, In: Nano letters. 19, 3, p. 2092-2098 7 p.Research output: Contribution to journal › Article › peer-review
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2018
Point-of-care sensors for the management of sepsis
Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In: Nature biomedical engineering. 2, 9, p. 640-648 9 p.Research output: Contribution to journal › Review article › peer-review
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2015
Optomechanical measurement of the stiffness of single adherent cells
Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In: Lab on a chip. 15, 17, p. 3460-3464 5 p.Research output: Contribution to journal › Article › peer-review
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A semiconductor bio-electrical platform with addressable thermal control circuits for accelerated bioassay development
Chen, T. T., Wen, C. H., Huang, J. C., Peng, Y. C., Liu, S., Su, S. H., Cheng, L. H., Lai, H. C., Liao, T. C., Lai, F. L., Cheng, C. W., Yang, C. K., Yang, J. H., Hsieh, Y. J., Salm, E., Reddy, B., Tsui, F., Liu, Y. S., Bashir, R. & Chen, M., Feb 20 2015, In: Technical Digest - International Electron Devices Meeting, IEDM. 2015-February, February, p. 15.4.1-15.4.4 7047058.Research output: Contribution to journal › Conference article › peer-review
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2018
Robust label-free microRNA detection using one million ISFET array
Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In: Biomedical microdevices. 20, 2, 1 p.Research output: Contribution to journal › Article › peer-review
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2016
Modeling and Analysis of Intercalant Effects on Circular DNA Conformation
Krueger, E., Shim, J., Fathizadeh, A., Chang, A. N., Subei, B., Yocham, K. M., Davis, P. H., Graugnard, E., Khalili-Araghi, F., Bashir, R., Estrada, D. & Fologea, D., Sep 27 2016, In: ACS Nano. 10, 9, p. 8910-8917 8 p.Research output: Contribution to journal › Article › peer-review
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Direct characterization of hydrodynamic loading on a microelectromechanical systems microstructure
Mehrnezhad, A., Bashir, R. & Park, K., Mar 14 2016, In: Applied Physics Letters. 108, 11, 114101.Research output: Contribution to journal › Article › peer-review
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2015
Electronic desalting for controlling the ionic environment in droplet-based biosensing platforms
Swaminathan, V. V., Dak, P., Reddy, B., Salm, E., Duarte-Guevara, C., Zhong, Y., Fischer, A., Liu, Y. S., Alam, M. A. & Bashir, R., Feb 2 2015, In: Applied Physics Letters. 106, 5, 053105.Research output: Contribution to journal › Article › peer-review
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Graphene-Based Platform for Infrared Near-Field Nanospectroscopy of Water and Biological Materials in an Aqueous Environment
Khatib, O., Wood, J. D., McLeod, A. S., Goldflam, M. D., Wagner, M., Damhorst, G. L., Koepke, J. C., Doidge, G. P., Rangarajan, A., Bashir, R., Pop, E., Lyding, J. W., Thiemens, M. H., Keilmann, F. & Basov, D. N., Aug 25 2015, In: ACS Nano. 9, 8, p. 7968-7975 8 p.Research output: Contribution to journal › Article › peer-review
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2016
Microcantilevers track single-cell mass
Bashir, R., Nov 8 2016, In: Nature Biotechnology. 34, 11, p. 1125-11260 10136 p.Research output: Contribution to journal › Short survey › peer-review
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2020
Integration of Graphene Electrodes with 3D Skeletal Muscle Tissue Models
Kim, Y., Pagan-Diaz, G., Gapinske, L., Kim, Y., Suh, J., Solomon, E., Harris, J. F., Nam, S. W. & Bashir, R., Jan 1 2020, (Accepted/In press) In: Advanced Healthcare Materials. 1901137.Research output: Contribution to journal › Article › peer-review
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Variable Membrane Dielectric Polarization Characteristic in Individual Live Cells
Park, I., Lim, J. W., Kim, S. H., Choi, S., Ko, K. H., Son, M. G., Chang, W. J., Yoon, Y. R., Yang, S., Key, J., Kim, Y. S., Eom, K., Bashir, R., Lee, S. Y. & Lee, S. W., Sep 3 2020, In: Journal of Physical Chemistry Letters. 11, 17, p. 7197-7203 7 p.Research output: Contribution to journal › Article › peer-review
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2015
Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction
Lee, M. K., Rich, M. H., Shkumatov, A., Jeong, J. H., Boppart, M. D., Bashir, R., Gillette, M. U., Lee, J. & Kong, H., Jan 1 2015, In: Advanced Healthcare Materials. 4, 2, p. 195-201 7 p.Research output: Contribution to journal › Article › peer-review
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2013
Patterned Three-Dimensional Encapsulation of Embryonic Stem Cells using Dielectrophoresis and Stereolithography
Bajaj, P., Marchwiany, D., Duarte, C. & Bashir, R., Mar 2013, In: Advanced Healthcare Materials. 2, 3, p. 450-458 9 p.Research output: Contribution to journal › Article › peer-review
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2020
Rapid Isothermal Amplification and Portable Detection System for SARS-CoV-2
Ganguli, A., Mostafa, A., Berger, J., Aydin, M. Y., Sun, F., Stewart de Ramirez, S. A., Valera, E., Cunningham, B. T., King, W. P. & Bashir, R., Sep 15 2020, In: Proceedings of the National Academy of Sciences. 117, 37, p. 22727-22735 9 p., 202014739.Research output: Contribution to journal › Article › peer-review
Open Access -
Ultrasensitive detection of nucleic acids using deformed graphene channel field effect biosensors
Hwang, M. T., Heiranian, M., Kim, Y., You, S., Leem, J., Taqieddin, A., Faramarzi, V., Jing, Y., Park, I., van der Zande, A. M., Nam, S., Aluru, N. R. & Bashir, R., Mar 24 2020, In: Nature communications. 11, 1, 1543.Research output: Contribution to journal › Article › peer-review
Open Access -
2012
Resonant MEMS mass sensors for measurement of microdroplet evaporation
Park, K., Kim, N., Morisette, D. T., Aluru, N. R. & Bashir, R., Apr 5 2012, In: Journal of Microelectromechanical Systems. 21, 3, p. 702-711 10 p., 6176181.Research output: Contribution to journal › Article › peer-review
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2015
Slowing DNA transport using graphene-DNA interactions
Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In: Advanced Functional Materials. 25, 6, p. 936-946 11 p.Research output: Contribution to journal › Article › peer-review
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Biophysical properties of human breast cancer cells measured using silicon MEMS resonators and atomic force microscopy
Corbin, E. A., Kong, F., Lim, C. T., King, W. P. & Bashir, R., Feb 7 2015, In: Lab on a chip. 15, 3, p. 839-847 9 p.Research output: Contribution to journal › Article › peer-review
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2018
3D printing for preoperative planning and surgical training: a review
Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J., Kesavadas, T. & Bashir, R., Sep 1 2018, In: Biomedical microdevices. 20, 3, 65.Research output: Contribution to journal › Review article › peer-review
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2013
A liposome-based ion release impedance sensor for biological detection
Damhorst, G. L., Smith, C. E., Salm, E. M., Sobieraj, M. M., Ni, H., Kong, H. & Bashir, R., Oct 2013, In: Biomedical microdevices. 15, 5, p. 895-905 11 p.Research output: Contribution to journal › Article › peer-review
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2019
Long-Term Cryopreservation and Revival of Tissue-Engineered Skeletal Muscle
Grant, L., Raman, R., Cvetkovic, C., Ferrall-Fairbanks, M. C., Pagan-Diaz, G. J., Hadley, P., Ko, E., Platt, M. O. & Bashir, R., Jul 1 2019, In: Tissue Engineering - Part A. 25, 13-14, p. 1023-1036 14 p.Research output: Contribution to journal › Article › peer-review
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2012
Characterization of mass and swelling of hydrogel microstructures using MEMS resonant mass sensor arrays
Millet, L. J., Corbin, E. A., Free, R., Park, K., Kong, H., King, W. P. & Bashir, R., Aug 20 2012, In: Small. 8, 16, p. 2555-2562 8 p.Research output: Contribution to journal › Article › peer-review
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Directed cell growth and alignment on protein-patterned 3D hydrogels with stereolithography: In this tissue engineering application, PEG-based hydrogels with different fibronectin patterns were fabricated and the influence of the protein patterns on shape and direction of seeded cells was studied
Chan, V., Collens, M. B., Jeong, J. H., Park, K., Kong, H. & Bashir, R., Sep 1 2012, In: Virtual and Physical Prototyping. 7, 3, p. 219-228 10 p.Research output: Contribution to journal › Article › peer-review
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2016
High-Resolution Projection Microstereolithography for Patterning of Neovasculature
Raman, R., Bhaduri, B., Mir, M., Shkumatov, A., Lee, M. K., Popescu, G., Kong, H. & Bashir, R., Mar 9 2016, In: Advanced Healthcare Materials. 5, 5, p. 610-619 10 p.Research output: Contribution to journal › Article › peer-review
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2015
Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli
Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In: Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.Research output: Contribution to journal › Article › peer-review
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2016
Biaxial Dielectrophoresis Force Spectroscopy: A Stoichiometric Approach for Examining Intermolecular Weak Binding Interactions
Park, I. S., Kwak, T. J., Lee, G., Son, M., Choi, J. W., Choi, S., Nam, K., Lee, S. Y., Chang, W. J., Eom, K., Yoon, D. S., Lee, S., Bashir, R. & Lee, S. W., Apr 26 2016, In: ACS Nano. 10, 4, p. 4011-4019 9 p.Research output: Contribution to journal › Article › peer-review
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2013
Enabling microscale and nanoscale approaches for bioengineered cardiac tissue
Chan, V., Raman, R., Cvetkovic, C. & Bashir, R., Mar 26 2013, In: ACS Nano. 7, 3, p. 1830-1837 8 p.Research output: Contribution to journal › Article › peer-review
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2018
Pixelated spatial gene expression analysis from tissue
Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In: Nature communications. 9, 1, 202.Research output: Contribution to journal › Article › peer-review
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2012
Silicon nanowires with high-k hafnium oxide dielectrics for sensitive detection of small nucleic acid oligomers
Dorvel, B. R., Reddy, B., Go, J., Duarte Guevara, C., Salm, E., Alam, M. A. & Bashir, R., Jul 24 2012, In: ACS Nano. 6, 7, p. 6150-6164 15 p.Research output: Contribution to journal › Article › peer-review
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2013
Detection and quantification of methylation in DNA using solid-state nanopores
Shim, J., Humphreys, G. I., Venkatesan, B. M., Munz, J. M., Zou, X., Sathe, C., Schulten, K., Kosari, F., Nardulli, A. M., Vasmatzis, G. & Bashir, R., 2013, In: Scientific reports. 3, 1389.Research output: Contribution to journal › Article › peer-review
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2012
Development of miniaturized walking biological machines
Chan, V., Park, K., Collens, M. B., Kong, H., Saif, T. A. & Bashir, R., 2012, In: Scientific reports. 2, 857.Research output: Contribution to journal › Article › peer-review
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2016
Design and integration of a problem-based biofabrication course into an undergraduate biomedical engineering curriculum
Raman, R., Mitchell, M., Perez-Pinera, P., Bashir, R. & DeStefano, L., Sep 21 2016, In: Journal of Biological Engineering. 10, 1, 10.Research output: Contribution to journal › Article › peer-review
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2013
Effect of biointerfacing linker chemistries on the sensitivity of silicon nanowires for protein detection
Dorvel, B., Reddy, B. & Bashir, R., Oct 15 2013, In: Analytical chemistry. 85, 20, p. 9493-9500 8 p.Research output: Contribution to journal › Article › peer-review
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Biomedical micro and nanotechnology: From lab-on-chip to building systems with cells
Hassan, U., Bajaj, P., Damhorst, G. & Bashir, R., Dec 1 2013, 2013 Transducers and Eurosensors XXVII: The 17th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS and EUROSENSORS 2013. p. 2539-2543 5 p. 6627323. (2013 Transducers and Eurosensors XXVII: The 17th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS and EUROSENSORS 2013).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2016
Electrical Chips for Biological Point-of-Care Detection
Reddy, B., Salm, E. & Bashir, R., Jul 11 2016, In: Annual Review of Biomedical Engineering. 18, p. 329-355 27 p.Research output: Contribution to journal › Review article › peer-review
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2013
Biomedical micro and nanotechnology: From lab-on-chip to building with cells
Hassan, U., Bajaj, P., Salm, E., Damhorst, G. & Bashir, R., Dec 16 2013, 71st Device Research Conference, DRC 2013 - Conference Digest. 1 p. 6633767. (Device Research Conference - Conference Digest, DRC).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2016
HIV-1 IIIB capture from whole blood on magnetic microparticles
Damhorst, G. L., Kooiman, J. M. & Bashir, R., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 5785-5788 4 p. 7592042. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2012
Mechanical communication between cardiac cell leads to synchrony in beating
Tang, X., Bajaj, P., Bashir, R. & Saif, T., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 333-334 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution