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2010

Functional annotation of novel lineage-specific genes using co-expression and promoter analysis

Kumar, C. G., Everts, R. E., Loor, J. J. & Lewin, H. A., Mar 9 2010, In : BMC genomics. 11, 1, 161.

Research output: Contribution to journalArticle

Genes
Placenta
Glycerophospholipids
Gene Regulatory Networks
Ruminants
2017

Grain challenge affects systemic and hepatic molecular biomarkers of inflammation, stress, and metabolic responses to a greater extent in Holstein than Jersey cows

Xu, T., Cardoso, F., Pineda, A., Trevisi, E., Shen, X., Rosa, F., Osorio, J. S. & Loor, J. J., Nov 2017, In : Journal of Dairy Science. 100, 11, p. 9153-9162 10 p.

Research output: Contribution to journalArticle

TOR Serine-Threonine Kinases
Physiological Stress
Jersey
biomarkers
Holstein
2014

Postpartal immunometabolic gene network expression and function in blood neutrophils are altered in response to prepartal energy intake and postpartal intramammary inflammatory challenge

Moyes, K. M., Graugnard, D. E., Khan, M. J., Mukesh, M. & Loor, J. J., Apr 2014, In : Journal of Dairy Science. 97, 4, p. 2165-2177 13 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Energy Intake
lipopolysaccharides
neutrophils
energy intake
2010
Adult Stem Cells
Stem cells
Mesenchymal Stromal Cells
Swine
Genes
2017

Far-off and close-up dry matter intake modulate indicators of immunometabolic adaptations to lactation in subcutaneous adipose tissue of pasture-based transition dairy cows

Vailati-Riboni, M., Farina, G., Batistel, F., Heiser, A., Mitchell, M. D., Crookenden, M. A., Walker, C. G., Kay, J. K., Meier, S., Roche, J. R. & Loor, J. J., Mar 1 2017, In : Journal of Dairy Science. 100, 3, p. 2334-2350 17 p.

Research output: Contribution to journalArticle

Subcutaneous Fat
Lactation
dry matter intake
adipose tissue
dairy cows
2018

Rumen-protected methionine during the peripartal period in dairy cows and its effects on abundance of major species of ruminal bacteria

Abdelmegeid, M. K., Elolimy, A. A., Zhou, Z., Lopreiato, V., McCann, J. C. & Loor, J. J., Feb 7 2018, In : Journal of Animal Science and Biotechnology. 9, 1, 17.

Research output: Contribution to journalArticle

rumen bacteria
Dairies
Rumen
Methionine
methionine
2014

Linoleic and α-linolenic fatty acid consumption over three generations exert cumulative regulation of hepatic expression of genes related to lipid metabolism

Jacometo, C. B., Schmitt, E., Pfeifer, L. F. M., Schneider, A., Bado, F., Da Rosa, F. T., Halfen, S., Del Pino, F. A. B., Loor, J. J., Corrêa, M. N. & Dionello, N. J. L., Jul 2014, In : Genes and Nutrition. 9, 4, 405.

Research output: Contribution to journalArticle

alpha-Linolenic Acid
Gene Expression Regulation
Sterols
Lipid Metabolism
Lipogenesis
2019

Enhanced supply of methionine or arginine alters mechanistic target of rapamycin signaling proteins, messenger RNA, and microRNA abundance in heat-stressed bovine mammary epithelial cells in vitro

Salama, A. A. K., Duque, M., Wang, L., Shahzad, K., Olivera, M. & Loor, J. J., Mar 2019, In : Journal of Dairy Science. 102, 3, p. 2469-2480 12 p.

Research output: Contribution to journalArticle

Open Access
TOR Serine-Threonine Kinases
messenger RNA
MicroRNAs
microRNA
Methionine
2018
Beef
Gene expression
carcass characteristics
beef cattle
Bacteria
2012

Old and new stories: Revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle

Bionaz, M., Periasamy, K., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Hurley, W. L. & Loor, J. J., Mar 12 2012, In : PloS one. 7, 3, e33268.

Research output: Contribution to journalArticle

Functional analysis
Transcriptome
Lactation
transcriptome
breasts
2015

Identification and characterization of microRNA sequences from bovine mammary epithelial cells

Bu, D. P., Nan, X. M., Wang, F., Loor, J. J. & Wang, J. Q., Mar 1 2015, In : Journal of Dairy Science. 98, 3, p. 1696-1705 10 p.

Research output: Contribution to journalArticle

MicroRNAs
microRNA
breasts
Breast
epithelial cells
2013

Nutritional management of the transition cow in the 21st century-a paradigm shift in thinking

Roche, J. R., Bell, A. W., Overton, T. R. & Loor, J. J., Aug 19 2013, In : Animal Production Science. 53, 9, p. 1000-1023 24 p.

Research output: Contribution to journalArticle

cows
total mixed rations
Energy Intake
Postpartum Period
calving
2015

Transcriptome profiles of whole blood in Italian Holstein and Italian Simmental lactating cows diverging for genetic merit for milk protein

Sandri, M., Stefanon, B. & Loor, J. J., Sep 1 2015, In : Journal of Dairy Science. 98, 9, p. 6119-6127 9 p.

Research output: Contribution to journalArticle

genetic merit
Milk Proteins
Simmental
dairy protein
Transcriptome
2011
Mastitis
Human Mammary Glands
Lactation
Genes
Infection
2012

Bioinformatics analysis of microRNA and putative target genes in bovine mammary tissue infected with Streptococcus uberis

Naeem, A., Zhong, K., Moisá, S. J., Drackley, J. K., Moyes, K. M. & Loor, J. J., Nov 1 2012, In : Journal of Dairy Science. 95, 11, p. 6397-6408 12 p.

Research output: Contribution to journalArticle

Streptococcus uberis
Streptococcus
Computational Biology
MicroRNAs
microRNA
2014
overfeeding
Peroxisome Proliferator-Activated Receptors
Gene Regulatory Networks
Up-Regulation
Holstein
2012

Blood immunometabolic indices and polymorphonuclear neutrophil function in peripartum dairy cows are altered by level of dietary energy prepartum

Graugnard, D. E., Bionaz, M., Trevisi, E., Moyes, K. M., Johnson, J. L., Wallace, R. L., Drackley, J. K., Bertoni, G. & Loor, J. J., Apr 1 2012, In : Journal of Dairy Science. 95, 4, p. 1749-1758 10 p.

Research output: Contribution to journalArticle

Peripartum Period
Postpartum Period
neutrophils
Neutrophils
dairy cows
2013

Systems physiology in dairy cattle: Nutritional genomics and beyond

Loor, J. J., Bionaz, M. & Drackley, J. K., Jan 2013, In : Annual Review of Animal Biosciences. 1, p. 365-392 28 p.

Research output: Contribution to journalArticle

Nutrigenomics
nutrigenomics
dairy cattle
physiology
Nutritional Physiological Phenomena
Gene Regulatory Networks
Energy Intake
Colostrum
neutrophils
heifers
2012

Effects of feeding roasted safflower seeds (variety IL-111) and fish oil on dry matter intake, performance and milk fatty acid profiles in dairy cattle

Alizadeh, A. R., Alikhani, M., Ghorbani, G. R., Rahmani, H. R., Rashidi, L. & Loor, J. J., Jun 1 2012, In : Journal of Animal Physiology and Animal Nutrition. 96, 3, p. 466-473 8 p.

Research output: Contribution to journalArticle

Carthamus tinctorius
safflower seed
Fish Oils
fish oils
dry matter intake
2017

Supplementation with rumen-protected methionine or choline during the transition period influences whole-blood immune response in periparturient dairy cows

Vailati-Riboni, M., Zhou, Z., Jacometo, C. B., Minuti, A., Trevisi, E., Luchini, D. N. & Loor, J. J., May 2017, In : Journal of Dairy Science. 100, 5, p. 3958-3968 11 p.

Research output: Contribution to journalArticle

Rumen
choline
Choline
Methionine
methionine

Effects of dietary neutral detergent fiber and starch ratio on rumen epithelial cell morphological structure and gene expression in dairy cows

Ma, L., Zhao, M., Zhao, L. S., Xu, J. C., Loor, J. J. & Bu, D. P., May 2017, In : Journal of Dairy Science. 100, 5, p. 3705-3712 8 p.

Research output: Contribution to journalArticle

Rumen
Starch
Detergents
neutral detergent fiber
rumen
2014

Hepatic purinergic signaling gene network expression and its relationship with inflammation and oxidative stress biomarkers in blood from peripartal dairy cattle

Seo, J., Osorio, J. S., Schmitt, E., Corrêa, M. N., Bertoni, G., Trevisi, E. & Loor, J. J., Feb 1 2014, In : Journal of Dairy Science. 97, 2, p. 861-873 13 p.

Research output: Contribution to journalArticle

Purinergic Receptors
Gene Regulatory Networks
dairy cattle
biomarkers
Oxidative Stress

Treatment with a nonsteroidal antiinflammatory drug after calving did not improve milk production, health, or reproduction parameters in pasture-grazed dairy cows

Meier, S., Priest, N. V., Burke, C. R., Kay, J. K., McDougall, S., Mitchell, M. D., Walker, C. G., Heiser, A., Loor, J. J. & Roche, J. R., May 2014, In : Journal of Dairy Science. 97, 5, p. 2932-2943 12 p.

Research output: Contribution to journalArticle

nonsteroidal anti-inflammatory agents
Reproduction
calving
milk production
Milk
2012
Peroxisome Proliferator-Activated Receptors
Ruminants
Lipid Metabolism
Fatty Acids
Gene Expression
Systems Integration
Systems Biology
functional response
ruminant
Ruminants
2013

Dietary marine algae and its influence on tissue gene network expression during milk fat depression in dairy ewes

Bichi, E., Frutos, P., Toral, P. G., Keisler, D., Hervás, G. & Loor, J. J., Oct 11 2013, In : Animal Feed Science and Technology. 186, 1-2, p. 36-44 9 p.

Research output: Contribution to journalArticle

algae
dairy sheep
milk fat
breasts
liver

Functional role of PPARs in ruminants: Potential targets for fine-tuning metabolism during growth and lactation

Bionaz, M., Chen, S., Khan, M. J. & Loor, J. J., Jun 3 2013, In : PPAR Research. 684159.

Research output: Contribution to journalReview article

Peroxisome Proliferator-Activated Receptors
Ruminants
Lactation
Growth
Gene Regulatory Networks
2014

Central role of the PPARγ gene network in coordinating beef cattle intramuscular adipogenesis in response to weaning age and nutrition

Moisá, S. J., Shike, D. W., Faulkner, D. B., Meteer, W. T., Keisler, D. & Loor, J. J., Jan 8 2014, In : Gene Regulation and Systems Biology. 2014, 8, p. 17-32 16 p.

Research output: Contribution to journalArticle

Beef
Adipogenesis
Peroxisome Proliferator-Activated Receptors
weaning
Gene Regulatory Networks

Postpartal subclinical endometritis alters transcriptome profiles in liver and adipose tissue of dairy cows

Akbar, H., Cardoso, F. C., Meier, S., Burke, C., McDougall, S., Mitchell, M., Walker, C., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Roche, J. R. & Loor, J. J., Feb 19 2014, In : Bioinformatics and Biology Insights. 8, p. 45-63 19 p.

Research output: Contribution to journalArticle

Endometritis
Dairies
Transcriptome
Liver
Adipose Tissue
2015

Grazing dairy cows had decreased interferon-γ, tumor necrosis factor, and interleukin-17, and increased expression of interleukin-10 during the first week after calving

Heiser, A., McCarthy, A., Wedlock, N., Meier, S., Kay, J., Walker, C., Crookenden, M. A., Mitchell, M. D., Morgan, S., Watkins, K., Loor, J. J. & Roche, J. R., Feb 1 2015, In : Journal of Dairy Science. 98, 2, p. 937-946 10 p.

Research output: Contribution to journalArticle

Immunocompetence
Interleukin-17
tumor necrosis factors
interferons
interleukin-10
2014

Effect of dietary starch level and high rumen-undegradable protein on endocrine-metabolic status, milk yield, and milk composition in dairy cows during early and late lactation

Piccioli-Cappelli, F., Loor, J. J., Seal, C. J., Minuti, A. & Trevisi, E., Dec 1 2014, In : Journal of Dairy Science. 97, 12, p. 7788-7803 16 p.

Research output: Contribution to journalArticle

dietary carbohydrate
late lactation
Rumen
early lactation
milk composition
2012

Level of nutrient intake affects mammary gland gene expression profiles in preweaned Holstein heifers

Piantoni, P., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, W. L., Akers, R. M. & Loor, J. J., May 1 2012, In : Journal of Dairy Science. 95, 5, p. 2550-2561 12 p.

Research output: Contribution to journalArticle

Human Mammary Glands
Transcriptome
nutrient intake
mammary glands
heifers
2017

Supplemental Smartamine M in higher-energy diets during the prepartal period improves hepatic biomarkers of health and oxidative status in Holstein cows

Vailati-Riboni, M., Osorio, J. S., Trevisi, E., Luchini, D. & Loor, J. J., Feb 6 2017, In : Journal of Animal Science and Biotechnology. 8, 1, 17.

Research output: Contribution to journalArticle

high energy diet
Biomarkers
Nutrition
Health Status
methionine
2010
Oxidative Stress
Remodeling
Oxidative stress
Dairies
Involution
2015

Body condition score at calving affects systemic and hepatic transcriptome indicators of inflammation and nutrient metabolism in grazing dairy cows

Akbar, H., Grala, T. M., Vailati Riboni, M., Cardoso, F. C., Verkerk, G., McGowan, J., Macdonald, K., Webster, J., Schutz, K., Meier, S., Matthews, L., Roche, J. R. & Loor, J. J., Feb 1 2015, In : Journal of Dairy Science. 98, 2, p. 1019-1032 14 p.

Research output: Contribution to journalArticle

Transcriptome
transcriptome
body condition
calving
Milk
2016
cobalt
Cobalt
neutrophils
Neutrophils
Diet

Short communication: Proteins from circulating exosomes represent metabolic state in transition dairy cows

Crookenden, M. A., Walker, C. G., Peiris, H., Koh, Y., Heiser, A., Loor, J. J., Moyes, K. M., Murray, A., Dukkipati, V. S. R., Kay, J. K., Meier, S., Roche, J. R. & Mitchell, M. D., Sep 1 2016, In : Journal of Dairy Science. 99, 9, p. 7661-7668 8 p.

Research output: Contribution to journalArticle

exosomes
Exosomes
animal communication
dairy cows
Communication

Corium molecular biomarkers reveal a beneficial effect on hoof transcriptomics in peripartal dairy cows supplemented with zinc, manganese, and copper from amino acid complexes and cobalt from cobalt glucoheptonate

Osorio, J. S., Batistel, F., Garrett, E. F., Elhanafy, M. M., Tariq, M. R., Socha, M. T. & Loor, J. J., Dec 1 2016, In : Journal of Dairy Science. 99, 12, p. 9974-9982 9 p.

Research output: Contribution to journalArticle

Hoof and Claw
hooves
Dermis
cobalt
Manganese

Liver X receptor α promotes the synthesis of monounsaturated fatty acids in goat mammary epithelial cells via the control of stearoyl-coenzyme A desaturase 1 in an SREBP-1-dependent manner

Yao, D. W., Luo, J., He, Q. Y., Xu, H. F., Li, J., Shi, H. B., Wang, H., Chen, Z. & Loor, J. J., Aug 1 2016, In : Journal of Dairy Science. 99, 8, p. 6391-6402 12 p.

Research output: Contribution to journalArticle

Monounsaturated Fatty Acids
stearoyl-CoA desaturase
monounsaturated fatty acids
Goats
breasts

Epigenetic regulation of pyruvate carboxylase gene expression in the postpartum liver

Walker, C. G., Crookenden, M. A., Henty, K. M., Handley, R. R., Kuhn-Sherlock, B., White, H. M., Donkin, S. S., Snell, R. G., Meier, S., Heiser, A., Loor, J. J., Mitchell, M. D. & Roche, J. R., Jul 1 2016, In : Journal of Dairy Science. 99, 7, p. 5820-5827 8 p., 74603.

Research output: Contribution to journalArticle

Pyruvate Carboxylase
pyruvate carboxylase
Epigenomics
epigenetics
Postpartum Period

Immunometabolic status during the peripartum period is enhanced with supplemental Zn, Mn, and Cu from amino acid complexes and Co from Co glucoheptonate

Batistel, F., Osorio, J. S., Ferrari, A., Trevisi, E., Socha, M. T. & Loor, J. J., May 2016, In : PloS one. 11, 5, e0155804.

Research output: Contribution to journalArticle

Peripartum Period
Nutrition
Liver
Diet
Trace Elements
2017

Supplemental methionine, choline, or taurine alter in vitro gene network expression of polymorphonuclear leukocytes from neonatal Holstein calves

Abdelmegeid, M. K., Vailati-Riboni, M., Alharthi, A., Batistel, F. & Loor, J. J., Apr 1 2017, In : Journal of Dairy Science. 100, 4, p. 3155-3165 11 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Taurine
taurine
choline
Choline

Peroxisome proliferator-activated receptor delta facilitates lipid secretion and catabolism of fatty acids in dairy goat mammary epithelial cells

Shi, H. B., Zhang, C. H., Zhao, W., Luo, J. & Loor, J. J., Jan 1 2017, In : Journal of Dairy Science. 100, 1, p. 797-806 10 p.

Research output: Contribution to journalArticle

PPAR delta
dairy goats
Goats
breasts
Breast

Expression of fatty acid sensing G-protein coupled receptors in peripartal Holstein cows

Agrawal, A., Alharthi, A., Vailati-Riboni, M., Zhou, Z. & Loor, J. J., Mar 1 2017, In : Journal of Animal Science and Biotechnology. 8, 1, 20.

Research output: Contribution to journalArticle

G-Protein-Coupled Receptors
Liver
Holstein
Fatty Acids
Nonesterified Fatty Acids
Betaine-Homocysteine S-Methyltransferase
Rumen
Methionine
methionine
rumen

Innate immune responses induced by lipopolysaccharide and lipoteichoic acid in primary goat mammary epithelial cells

Bulgari, O., Dong, X., Roca, A. L., Caroli, A. M. & Loor, J. J., Apr 1 2017, In : Journal of Animal Science and Biotechnology. 8, 1, 29.

Research output: Contribution to journalArticle

Chemokine CXCL6
C Chemokines
prostaglandin synthase
Prostaglandin-Endoperoxide Synthases
Toll-Like Receptor 4
2016

Effect of dietary vegetable oils on the fatty acid profile of plasma lipoproteins in dairy cows

Vargas-Bello-Pérez, E., Íñiguez-González, G., Cancino-Padilla, N., Loor, J. J. & Garnsworthy, P. C., Jul 3 2016, In : Archives of Animal Nutrition. 70, 4, p. 322-332 11 p.

Research output: Contribution to journalArticle

Unsaturated Dietary Fats
Soybean Oil
Plant Oils
vegetable oil
lipoproteins
2011

Mammary Gland: Gene Networks Controlling Development and Involution

Loor, J. J., Bionaz, M. & Hurley, W. L., Jan 1 2011, Encyclopedia of Dairy Sciences: Second Edition. Elsevier Inc., p. 346-351 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

microarray technology
Gene Regulatory Networks
Human Mammary Glands
mammary glands
Genes
2017
Oxidative stress
Dairies
endometrium
Trace Elements
Biomarkers