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Author

  • Joseph Maria Kumar Irudayaraj
2019

Modulation of gene silencing by Cdc7p via H4 K16 acetylation and phosphorylation of chromatin assembly factor CAF-1 in saccharomyces cerevisiae

Young, T. J., Cui, Y., Irudayaraj, J. & Kirchmaier, A. L., Apr 2019, In : Genetics. 211, 4, p. 1219-1237 19 p.

Research output: Contribution to journalArticle

2012

Preface

Irudayaraj, J. M. K., Aug 31 2012, Biomedical Nanosensors. Pan Stanford Publishing Pte. Ltd.

Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

2018

Electrospun probiotics: An alternative for encapsulation

Akbar, Z., Zahoor, T., Huma, N., Jamil, A., Ayesha, H. & Irudayaraj, J. M. K., Nov 2018, In : Journal of Biological Regulators and Homeostatic Agents. 32, 6, p. 1551-1556 6 p.

Research output: Contribution to journalArticle

2019

Epigenetic biomarker screening by FLIM-FRET for combination therapy in ER+ breast cancer

Liu, W., Cui, Y., Ren, W. & Irudayaraj, J., Jan 30 2019, In : Clinical epigenetics. 11, 1, 16.

Research output: Contribution to journalArticle

2016

Regulatory landscape and clinical implication of MBD3 in human malignant glioma

Cui, Y., Li, J., Weng, L., Wirbisky, S. E., Freeman, J. L., Liu, J., Liu, Q., Yuan, X. & Irudayaraj, J., 2016, In : Oncotarget. 7, 49, p. 81698-81714 17 p.

Research output: Contribution to journalArticle

2014

Second harmonic super-resolution microscopy for quantification of mRNA at single copy sensitivity

Liu, J., Cho, I. H., Cui, Y. & Irudayaraj, J., Dec 23 2014, In : ACS Nano. 8, 12, p. 12418-12427 10 p.

Research output: Contribution to journalArticle

2015

Vibrational spectroscopy for food quality and safety screening

Craig, A. P., Franca, A. S. & Irudayaraj, J., Jan 1 2015, High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 165-194 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Au nanoparticles on graphitic petal arrays for surface-enhanced Raman spectroscopy

Rout, C. S., Kumar, A., Xiong, G., Irudayaraj, J. & Fisher, T. S., Sep 27 2010, In : Applied Physics Letters. 97, 13, 133108.

Research output: Contribution to journalArticle

2011

SERS driven cross-platform based multiplex pathogen detection

Ravindranath, S. P., Wang, Y. & Irudayaraj, J., Mar 1 2011, In : Sensors and Actuators, B: Chemical. 152, 2, p. 183-190 8 p.

Research output: Contribution to journalArticle

2015

Decitabine nanoconjugate sensitizes human glioblastoma cells to temozolomide

Cui, Y., Naz, A., Thompson, D. H. & Irudayaraj, J., Apr 6 2015, In : Molecular pharmaceutics. 12, 4, p. 1279-1288 10 p.

Research output: Contribution to journalArticle

2017
2015

Membrane filter-assisted surface enhanced Raman spectroscopy for the rapid detection of E. coli O157: H7 in ground beef

Cho, I. H., Bhandari, P., Patel, P. & Irudayaraj, J., Feb 15 2015, In : Biosensors and Bioelectronics. 64, p. 171-176 6 p.

Research output: Contribution to journalArticle

Latest developments of nanotoxicology in plants

Mura, S., Greppi, G. & Irudayaraj, J., Jan 1 2015, Nanotechnology and Plant Sciences: Nanoparticles and Their Impact on Plants. Springer International Publishing, p. 125-151 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

A wireless chemical sensing scheme using ultrasonic imaging of microbubble embeded hydrogel

Park, J. H., Kim, A., Song, S. H., Bhandari, P., Irudayaraj, J. & Ziaie, B., Aug 5 2015, 2015 Transducers - 2015 18th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS 2015. Institute of Electrical and Electronics Engineers Inc., p. 2220-2223 4 p. 7181402. (2015 Transducers - 2015 18th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2013

Broadband enhancement of spontaneous emission from nitrogen-vacancy centers in nanodiamonds by hyperbolic metamaterials

Shalaginov, M. Y., Ishii, S., Liu, J., Liu, J., Irudayaraj, J., Lagutchev, A., Kildishev, A. V. & Shalaev, V. M., Apr 29 2013, In : Applied Physics Letters. 102, 17, 173114.

Research output: Contribution to journalArticle

2017

Single molecule Raman spectroscopic assay to detect transgene from GM plants

Kadam, U. S., Chavhan, R. L., Schulz, B. & Irudayaraj, J., Sep 1 2017, In : Analytical Biochemistry. 532, p. 60-63 4 p.

Research output: Contribution to journalArticle

2013

Surface-enhanced Raman spectroscopy applied to food safety

Craig, A. P., Franca, A. S. & Irudayaraj, J., Feb 1 2013, In : Annual Review of Food Science and Technology. 4, 1, p. 369-380 12 p.

Research output: Contribution to journalArticle

2014

Quantifying the local density of optical states of nanorods by fluorescence lifetime imaging

Liu, J., Jiang, X., Ishii, S., Shalaev, V. & Irudayaraj, J., Jun 2014, In : New Journal of Physics. 16, 063069.

Research output: Contribution to journalArticle

2017

Multiplex single-cell quantification of rare RNA transcripts from protoplasts in a model plant system

Kadam, U. S., Schulz, B. & Irudayaraj, J. M. K., Jun 2017, In : Plant Journal. 90, 6, p. 1187-1195 9 p.

Research output: Contribution to journalArticle

2018

Current technologies of electrochemical immunosensors: Perspective on signal amplification

Cho, I. H., Lee, J., Kim, J., Kang, M. S., Paik, J. K., Ku, S., Cho, H. M., Irudayaraj, J. & Kim, D. H., Jan 12 2018, In : Sensors (Switzerland). 18, 1, 207.

Research output: Contribution to journalReview article

2016

CRISPR-dCas9 mediated TET1 targeting for selective DNA demethylation at BRCA1 promoter

Choudhury, S. R., Cui, Y., Lubecka, K., Stefanska, B. & Irudayaraj, J., 2016, In : Oncotarget. 7, 29, p. 46545-46556 12 p.

Research output: Contribution to journalArticle

2014

Nano/micro and spectroscopic approaches to food pathogen detection

Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In : Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

Research output: Contribution to journalReview article

2019

The transition structure of chromatin fibers at the nanoscale probed by cryogenic electron tomography

Zhou, Z., Li, K., Yan, R., Yu, G., Gilpin, C. J., Jiang, W. & Irudayaraj, J. M. K., Aug 7 2019, In : Nanoscale. 11, 29, p. 13783-13789 7 p.

Research output: Contribution to journalArticle

2016

Kinase phosphorylation monitoring with i-motif DNA cross-linked SERS probes

Ren, W., Damayanti, N. P., Wang, X. & Irudayaraj, J. M. K., Jan 7 2016, In : Chemical Communications. 52, 2, p. 410-413 4 p.

Research output: Contribution to journalArticle

2010

SERS aptasensor from nanorod-nanoparticle junction for protein detection

Wang, Y., Lee, K. & Irudayaraj, J., 2010, In : Chemical Communications. 46, 4, p. 613-615 3 p.

Research output: Contribution to journalArticle

2019

Bioinspired glycosaminoglycan hydrogels via click chemistry for 3D dynamic cell encapsulation

Kuang, L., Damayanti, N. P., Jiang, C., Fei, X., Liu, W., Narayanan, N., Irudayaraj, J., Campanella, O. & Deng, M., Feb 5 2019, In : Journal of Applied Polymer Science. 136, 5, 47212.

Research output: Contribution to journalArticle

2015

Rapid and unbiased extraction of chromatin associated RNAs from purified native chromatin

Zhou, Z., Yang, Y., Konieczny, S. F. & Irudayaraj, J. M. K., Dec 24 2015, In : Journal of Chromatography A. 1426, p. 64-68 5 p.

Research output: Contribution to journalArticle

2014

Application of elastic net and infrared spectroscopy in the discrimination between defective and non-defective roasted coffees

Craig, A. P., Franca, A. S., Oliveira, L. S., Irudayaraj, J. & Ileleji, K., Oct 1 2014, In : Talanta. 128, p. 393-400 8 p.

Research output: Contribution to journalArticle

2012

Single-molecule tools elucidate H2A.Z nucleosome composition

Chen, J., Miller, A., Kirchmaier, A. L. & Irudayaraj, J. M. K., Jun 15 2012, In : Journal of cell science. 125, 12, p. 2954-2964 11 p.

Research output: Contribution to journalArticle

Hydrodynamic size-dependent cellular uptake of aqueous QDs probed by fluorescence correlation spectroscopy

Dong, C. & Irudayaraj, J., Oct 11 2012, In : Journal of Physical Chemistry B. 116, 40, p. 12125-12132 8 p.

Research output: Contribution to journalArticle

2013

Gene expression analysis using conventional and imaging methods

Kadam, U. S., Lossie, A. C., Schulz, B. & Irudayaraj, J., Jan 1 2013, DNA and RNA Nanobiotechnologies in Medicine: Diagnosis and Treatment of Diseases. Springer Berlin Heidelberg, p. 141-162 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Mitochondrial Dysfunction, Disruption of F-Actin Polymerization, and Transcriptomic Alterations in Zebrafish Larvae Exposed to Trichloroethylene

Wirbisky, S. E., Damayanti, N. P., Mahapatra, C. T., Sepúlveda, M. S., Irudayaraj, J. & Freeman, J. L., Feb 15 2016, In : Chemical Research in Toxicology. 29, 2, p. 169-179 11 p.

Research output: Contribution to journalArticle

2010

Detection and differentiation of live and heat-treated Salmonella enterica serovars inoculated onto chicken breast using Fourier transform infrared (FT-IR) spectroscopy

Davis, R., Burgula, Y., Deering, A., Irudayaraj, J., Reuhs, B. L. & Mauer, L. J., Dec 1 2010, In : Journal of Applied Microbiology. 109, 6, p. 2019-2031 13 p.

Research output: Contribution to journalArticle

2017

Spin contrast of purcell-enhanced nitrogen-vacancy centers in diamonds

Bogdanov, S., Shalaginov, M. Y., Akimov, A. V., Lagutchev, A., Liu, J., Woods, D., Ferrera, M., Kapitanova, P., Belov, P., Irudayaraj, J. M. K., Boltasseva, A. & Shalaev, V. M., Jan 1 2017, CLEO: QELS_Fundamental Science, CLEO_QELS 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F42-CLEO_QELS 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

Graphene for biosensing applications

Jalilian, R., Jauregui, L. A., Lee, K., Chen, Y. P. & Irudayaraj, J., Aug 31 2012, Biomedical Nanosensors. Pan Stanford Publishing Pte. Ltd., p. 153-186 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Detection of E. coli O157:H7 from ground beef using fourier transform infrared (FT-IR) spectroscopy and chemometrics

Davis, R., Irudayaraj, J. M. K., Reuhs, B. L. & Mauer, L. J., Aug 1 2010, In : Journal of food science. 75, 6

Research output: Contribution to journalArticle

2012

Multifunctional gold nanorod theragnostics probed by multi-photon imaging

Book Newell, B., Wang, Y. & Irudayaraj, J., Feb 1 2012, In : European Journal of Medicinal Chemistry. 48, p. 330-337 8 p.

Research output: Contribution to journalArticle

2010

Fluorescence lifetime cross correlation spectroscopy resolves EGFR and antagonist interaction in live cells

Chen, J. & Irudayaraj, J., Aug 1 2010, In : Analytical chemistry. 82, 15, p. 6415-6421 7 p.

Research output: Contribution to journalArticle

2013

Probing site-exclusive binding of aqueous QDs and their organelle-dependent dynamics in live cells by single molecule spectroscopy

Dong, C., Chowdhury, B. & Irudayaraj, J., May 21 2013, In : Analyst. 138, 10, p. 2871-2876 6 p.

Research output: Contribution to journalArticle

2012

Biomedical nanosensors

Irudayaraj, J., Aug 31 2012, Pan Stanford Publishing Pte. Ltd.

Research output: Book/Report/Conference proceedingBook

2017

Electron spin contrast of Purcell-enhanced nitrogen-vacancy ensembles in nanodiamonds

Bogdanov, S., Shalaginov, M. Y., Akimov, A., Lagutchev, A. S., Kapitanova, P., Liu, J., Woods, D., Ferrera, M., Belov, P., Irudayaraj, J., Boltasseva, A. & Shalaev, V. M., Jul 25 2017, In : Physical Review B. 96, 3, 035146.

Research output: Contribution to journalArticle

2019

Plasmonic enhancement in lateral flow sensors for improved sensing of E. coli O157:H7

Ren, W., Ballou, D. R., FitzGerald, R. & Irudayaraj, J., Feb 1 2019, In : Biosensors and Bioelectronics. 126, p. 324-331 8 p.

Research output: Contribution to journalArticle

2016

Epigenetic toxicity of trichloroethylene: A single-molecule perspective

Cui, Y., Choudhury, S. R. & Irudayaraj, J., 2016, In : Toxicology Research. 5, 2, p. 641-650 10 p.

Research output: Contribution to journalArticle

2014

Single-photon source based on NV center in nanodiamond coupled to TiN-based hyperbolic metamaterial

Shalaginov, M. Y., Vorobyov, V. V., Liu, J., Ferrera, M., Akimov, A. V., Lagutchev, A., Smolyaninov, A. N., Klimov, V. V., Irudayaraj, J., Kildishev, A. V., Boltasseva, A. & Shalaev, V. M., Jan 1 2014.

Research output: Contribution to conferencePaper

2018

An ultrasensitive aptasensor based on fluorescent resonant energy transfer and exonuclease-assisted target recycling for patulin detection

Wu, Z., Xu, E., Jin, Z. & Irudayaraj, J., May 30 2018, In : Food chemistry. 249, p. 136-142 7 p.

Research output: Contribution to journalArticle

2019

Epigenetic Process Monitoring in Live Cultures with Peptide Biosensors

Damayanti, N. P., Buno, K., Voytik Harbin, S. L. & Irudayaraj, J. M. K., Mar 22 2019, In : ACS Sensors. 4, 3, p. 562-565 4 p.

Research output: Contribution to journalArticle

2015

Water flattens graphene wrinkles: Laser shock wrapping of graphene onto substrate-supported crystalline plasmonic nanoparticle arrays

Hu, Y., Lee, S., Kumar, P., Nian, Q., Wang, W., Irudayaraj, J. & Cheng, G. J., Dec 21 2015, In : Nanoscale. 7, 47, p. 19885-19893 9 p.

Research output: Contribution to journalArticle

Trichloroethylene sensing in water based on SERS with multifunctional Au/TiO2 core-shell nanocomposites

Ren, W., Zhou, Z. & Irudayaraj, J. M. K., Oct 7 2015, In : Analyst. 140, 19, p. 6625-6630 6 p.

Research output: Contribution to journalArticle

2018

Exploring the anti-quorum sensing activity of a d-limonene nanoemulsion for Escherichia coli O157:H7

Wang, R., Vega, P., Xu, Y., Chen, C. Y. & Irudayaraj, J., Jul 2018, In : Journal of Biomedical Materials Research - Part A. 106, 7, p. 1979-1986 8 p.

Research output: Contribution to journalArticle

2013

Real-time dynamics of methyl-CpG-binding domain protein 3 and its role in DNA demethylation by fluorescence correlation spectroscopy

Cui, Y., Cho, I. H., Chowdhury, B. & Irudayaraj, J., Oct 2013, In : Epigenetics. 8, 10, p. 1089-1100 12 p.

Research output: Contribution to journalArticle