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• 2012

  Analyses of pig genomes provide insight into porcine demography and evolution

  Groenen, M. A. M., Archibald, A. L., Uenishi, H., Tuggle, C. K., Takeuchi, Y., Rothschild, M. F., Rogel-Gaillard, C., Park, C., Milan, D., Megens, H. J., Li, S., Larkin, D. M., Kim, H., Frantz, L. A. F., Caccamo, M., Ahn, H., Aken, B. L., Anselmo, A., Anthon, C., Auvil, L. & 116 others, Badaoui, B., Beattie, C. W., Bendixen, C., Berman, D., Blecha, F., Blomberg, J., Bolund, L., Bosse, M., Botti, S., Bujie, Z., Bystrom, M., Capitanu, B., Carvalho-Silva, D., Chardon, P., Chen, C., Cheng, R., Choi, S. H., Chow, W., Clark, R. C., Clee, C., Crooijmans, R. P. M. A., Dawson, H. D., Dehais, P., De Sapio, F., Dibbits, B., Drou, N., Du, Z. Q., Eversole, K., Fadista, J., Fairley, S., Faraut, T., Faulkner, G. J., Fowler, K. E., Fredholm, M., Fritz, E., Gilbert, J. G. R., Giuffra, E., Gorodkin, J., Griffin, D. K., Harrow, J. L., Hayward, A., Howe, K., Hu, Z. L., Humphray, S. J., Hunt, T., Hornshoøj, H., Jeon, J. T., Jern, P., Jones, M., Jurka, J., Kanamori, H., Kapetanovic, R., Kim, J., Kim, J. H., Kim, K. W., Kim, T. H., Larson, G., Lee, K., Lee, K. T., Leggett, R., Lewin, H. A., Li, Y., Liu, W., Loveland, J. E., Lu, Y., Lunney, J. K., Ma, J., Madsen, O., Mann, K., Matthews, L., McLaren, S., Morozumi, T., Murtaugh, M. P., Narayan, J., Nguyen, D. T., Ni, P., Oh, S. J., Onteru, S., Panitz, F., Park, E. W., Park, H. S., Pascal, G., Paudel, Y., Perez-Enciso, M., Ramirez-Gonzalez, R., Reecy, J. M., Rodriguez-Zas, S., Rohrer, G. A., Rund, L., Sang, Y., Schachtschneider, K., Schraiber, J. G., Schwartz, J., Scobie, L., Scott, C., Searle, S., Servin, B., Southey, B. R., Sperber, G., Stadler, P., Sweedler, J. V., Tafer, H., Thomsen, B., Wali, R., Wang, J., Wang, J., White, S., Xu, X., Yerle, M., Zhang, G., Zhang, J., Zhang, J., Zhao, S., Rogers, J., Churcher, C. & Schook, L. B., Nov 15 2012, In: Nature. 491, 7424, p. 393-398 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Sus scrofa
  • Swine
  • Genome
  • Demography
  • Smell

• Analytical chemistry: The synergies between the division and the journal

  Sweedler, J. V. & Koppenaal, D. W., Nov 6 2012, In: Analytical chemistry. 84, 21, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• An enhanced protein crosslink identification strategy using CID-cleavable chemical crosslinkers and LC/MS ⁿ analysis

  Liu, F., Wu, C., Sweedler, J. V. & Goshe, M. B., Feb 2012, In: Proteomics. 12, 3, p. 401-405 5 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  • Peptides
  • aspartyl-proline
  • Cross-Linking Reagents
  • Proteins
  • Optical resolving power

• A protease for 'middle-down' proteomics

  Wu, C., Tran, J. C., Zamdborg, L., Durbin, K. R., Li, M., Ahlf, D. R., Early, B. P., Thomas, P. M., Sweedler, J. V. & Kelleher, N. L., Aug 1 2012, In: Nature Methods. 9, 8, p. 822-824 3 p.

  Research output: Contribution to journal › Article › peer-review

  • Proteomics
  • Peptide Hydrolases
  • Peptides
  • Proteolysis
  • Membranes

• Are we growing more picky, more careless or simply under more pressure?

  Sweedler, J. V., Aug 7 2012, In: Analytical chemistry. 84, 15, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis

  Erb, T. J., Evans, B. S., Cho, K., Warlick, B. P., Sriram, J., Wood, B. M. K., Imker, H. J., Sweedler, J. V., Tabita, F. R. & Gerlt, J. A., Nov 2012, In: Nature chemical biology. 8, 11, p. 926-932 7 p.

  Research output: Contribution to journal › Article › peer-review

  • ribulose-1,5 diphosphate
  • Oxygenases
  • link protein
  • Terpenes
  • Rhodospirillum rubrum

• Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons

  Wang, T. A., Yu, Y. V., Govindaiah, G., Ye, X., Artinian, L., Coleman, T. P., Sweedler, J. V., Cox, C. L. & Gillette, M. U., Aug 17 2012, In: Science. 337, 6096, p. 839-842 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Suprachiasmatic Nucleus Neurons
  • Suprachiasmatic Nucleus
  • Circadian Rhythm
  • Circadian Clocks
  • Potassium Channels

• Collaborators, colleagues, and friends need not be listed

  Sweedler, J. V., May 1 2012, In: Analytical chemistry. 84, 9, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Comparative peptidomics analysis of neural adaptations in rats repeatedly exposed to amphetamine

  Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Nov 2012, In: Journal of Neurochemistry. 123, 2, p. 276-287 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Rats
  • Amphetamine
  • Mass spectrometry
  • Peptides
  • Liquid chromatography

• D-Aspartate acts as a signaling molecule in nervous and neuroendocrine systems

  Ota, N., Shi, T. & Sweedler, J. V., Nov 2012, In: Amino Acids. 43, 5, p. 1873-1886 14 p.

  Research output: Contribution to journal › Review article › peer-review

  • D-Aspartic Acid
  • Neurosecretory Systems
  • Neurology
  • Molecules
  • Nervous System

• Don't grow your article too long: We do have length guidelines

  Sweedler, J. V., Jul 3 2012, In: Analytical chemistry. 84, 13, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Evaluation of database search programs for accurate detection of neuropeptides in tandem mass spectrometry experiments

  Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 7 2012, In: Journal of Proteome Research. 11, 12, p. 6044-6055 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass spectrometry
  • Tandem Mass Spectrometry
  • Neuropeptides
  • Peptides
  • Databases

• Filling Royce's shoes

  Sweedler, J., Jan 3 2012, In: Analytical chemistry. 84, 1, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• First survey and functional annotation of prohormone and convertase genes in the pig

  Porter, K. I., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Nov 15 2012, In: BMC genomics. 13, 1, 582.

  Research output: Contribution to journal › Article › peer-review

  • Proprotein Convertases
  • Swine
  • Urocortins
  • Neuropeptides
  • Genes

• Glial D-serine gates NMDA receptors at excitatory synapses in prefrontal cortex

  Fossat, P., Turpin, F. R., Sacchi, S., Dulong, J., Shi, T., Rivet, J. M., Sweedler, J. V., Pollegioni, L., Millan, M. J., Oliet, S. H. R. & Mothet, J. P., Mar 2012, In: Cerebral Cortex. 22, 3, p. 595-606 12 p.

  Research output: Contribution to journal › Article › peer-review

  • N-Methyl-D-Aspartate Receptors
  • Synapses
  • Prefrontal Cortex
  • Neuroglia
  • Glycine

• Label-free quantitation of peptide release from neurons in a microfluidic device with mass spectrometry imaging

  Zhong, M., Lee, C. Y., Croushore, C. A. & Sweedler, J. V., May 8 2012, In: Lab on a chip. 12, 11, p. 2037-2045 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Peptides
  • Mass spectrometry
  • Microfluidics
  • Neurons

• Let's get social

  Sweedler, J. V., Apr 3 2012, In: Analytical chemistry. 84, 7, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Mass spectrometry imaging and profiling of single cells

  Lanni, E. J., Rubakhin, S. S. & Sweedler, J. V., Aug 30 2012, In: Journal of Proteomics. 75, 16, p. 5036-5051 16 p.

  Research output: Contribution to journal › Review article › peer-review

  • Mass spectrometry
  • Secondary Ion Mass Spectrometry
  • Mass Spectrometry
  • Imaging techniques
  • Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry

• Mechanical tension modulates local and global vesicle dynamics in neurons

  Ahmed, W. W., Li, T. C., Rubakhin, S. S., Chiba, A., Sweedler, J. V. & Saif, T. A., Jun 1 2012, In: Cellular and Molecular Bioengineering. 5, 2, p. 155-164 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Vesicles
  • Neuron
  • Aplysia
  • Drosophila
  • Neurons

• Metabolomics in analytical chemistry

  Sweedler, J. V., Jul 17 2012, In: Analytical chemistry. 84, 14, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Microfluidic device for the selective chemical stimulation of neurons and characterization of peptide release with mass spectrometry

  Croushore, C. A., Supharoek, S. A., Lee, C. Y., Jakmunee, J. & Sweedler, J. V., Nov 6 2012, In: Analytical Chemistry. 84, 21, p. 9446-9452 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass spectrometry
  • Microfluidics
  • Neurons
  • Characterization (materials science)
  • Peptides

• Now it is a highlight, not an acceleration

  Sweedler, J. V., Sep 4 2012, In: Analytical chemistry. 84, 17, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Peptidomic analyses of mouse astrocytic cell lines and rat primary cultured astrocytes

  Yin, P., Knolhoff, A. M., Rosenberg, H. J., Millet, L. J., Gillette, M. U. & Sweedler, J. V., Aug 3 2012, In: Journal of Proteome Research. 11, 8, p. 3965-3973 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Astrocytes
  • Rats
  • Cells
  • Peptides
  • Cell Line

• Professional Editors or Scientist Editors? Both perspectives have value.

  Sweedler, J. V., Mar 6 2012, In: Analytical chemistry. 84, 5, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Rejections with editorial expertise and without external review: Are these fair?

  Sweedler, J. V., Dec 4 2012, In: Analytical chemistry. 84, 23, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Relative quantitation of neuropeptides over a thousand-fold concentration range

  Hou, X., Xie, F. & Sweedler, J. V., Dec 2012, In: Journal of the American Society for Mass Spectrometry. 23, 12, p. 2083-2093 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass spectrometry
  • Neuropeptides
  • Mass Spectrometry
  • Electrospray ionization
  • Ionization

• Reviews, perspectives, features: What's the difference?

  Sweedler, J. V., Feb 7 2012, In: Analytical chemistry. 84, 3, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Sampling techniques for single-cell electrophoresis

  Cecala, C. & Sweedler, J. V., Jul 7 2012, In: Analyst. 137, 13, p. 2922-2929 8 p.

  Research output: Contribution to journal › Review article › peer-review

  • Electrophoresis
  • sampling technique
  • electrokinesis
  • Sampling
  • Fluorescence

• Secondary ion mass spectrometry imaging of molecular distributions in cultured neurons and their processes: Comparative analysis of sample preparation

  Tucker, K. R., Li, Z., Rubakhin, S. S. & Sweedler, J. V., Nov 2012, In: Journal of the American Society for Mass Spectrometry. 23, 11, p. 1931-1938 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Secondary Ion Mass Spectrometry
  • Secondary ion mass spectrometry
  • Molecular Imaging
  • Neurons
  • Imaging techniques

• Serotonin of mast cell origin contributes to hippocampal function

  Nautiyal, K. M., Dailey, C. A., Jahn, J. L., Rodriquez, E., Son, N. H., Sweedler, J. V. & Silver, R., Aug 2012, In: European Journal of Neuroscience. 36, 3, p. 2347-2359 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Mast Cells
  • Serotonin
  • Neurogenesis
  • Hippocampus
  • Fluoxetine

• Single-cell metabolomics: Changes in the metabolome of freshly isolated and cultured neurons

  Nemes, P., Knolhoff, A. M., Rubakhin, S. S. & Sweedler, J. V., Oct 17 2012, In: ACS Chemical Neuroscience. 3, 10, p. 782-792 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Metabolomics
  • Metabolome
  • Neurons
  • Glycerol
  • Metabolites

• Targeted single-cell microchemical analysis: MS-based peptidomics of individual paraformaldehyde-fixed and immunolabeled neurons

  Neupert, S., Rubakhin, S. S. & Sweedler, J. V., Aug 24 2012, In: Chemistry and Biology. 19, 8, p. 1010-1019 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Single-Cell Analysis
  • paraform
  • Mass spectrometry
  • Neuropeptides
  • Molecules

• The Hypothalamic-Neurohypophyseal System: From Genome to Physiology

  Murphy, D., Konopacka, A., Hindmarch, C., Paton, J. F. R., Sweedler, J. V., Gillette, M. U., Ueta, Y., Grinevich, V., Lozic, M. & Japundzic-Zigon, N., Apr 2012, In: Journal of Neuroendocrinology. 24, 4, p. 539-553 15 p.

  Research output: Contribution to journal › Review article › peer-review

  • Oxytocin
  • Genome
  • Optogenetics
  • Neuroanatomy
  • Breeding

• Therapeutic peptide production in Drosophila

  Park, D., Hou, X., Sweedler, J. V. & Taghert, P. H., Aug 2012, In: Peptides. 36, 2, p. 251-256 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Drosophila
  • Peptides
  • Metabolic Engineering
  • Metabolic engineering
  • Synthetic Chemistry Techniques

• Two unrelated items to avoid, one for me and one for you

  Sweedler, J. V., Jun 5 2012, In: Analytical chemistry. 84, 11, p. 4635-4636 2 p.

  Research output: Contribution to journal › Editorial › peer-review

• Urotensin II in Invertebrates: From Structure to Function in Aplysia californica

  Romanova, E. V., Sasaki, K., Alexeeva, V., Vilim, F. S., Jing, J., Richmond, T. A., Weiss, K. R. & Sweedler, J. V., Nov 8 2012, In: PloS one. 7, 11, e48764.

  Research output: Contribution to journal › Article › peer-review

  • Invertebrates
  • urotensin II
  • Aplysia californica
  • Aplysia
  • invertebrates
• 2010

  A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome

  Menschaert, G., Vandekerckhove, T. T. M., Baggerman, G., Landuyt, B., Sweedler, J. V., Schoofs, L., Luyten, W. & Van Criekinge, W., Feb 5 2010, In: Journal of Proteome Research. 9, 2, p. 990-996 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Sea Urchins
  • Genes
  • Genome
  • Databases
  • High performance liquid chromatography

• A mass spectrometry primer for mass spectrometry imaging

  Rubakhin, S. S. & Sweedler, J. V., 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 21-49 29 p. (Methods in Molecular Biology; vol. 656).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Tandem Mass Spectrometry
  • Mass Spectrometry
  • Molecular Biology
  • Research Personnel
  • Technology

• Base-induced delignification of miscanthus x giganteus studied by three-dimensional confocal raman imaging

  Chu, L. Q., Masyuko, R., Sweedler, J. V. & Bohn, P. W., Jul 1 2010, In: Bioresource Technology. 101, 13, p. 4919-4925 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Lignin
  • Delignification
  • Cells
  • Cellulose
  • Imaging techniques

• Circadian integration of glutamatergic signals by little SAAS in novel suprachiasmatic circuits

  Atkins, N., Mitchell, J. W., Romanova, E. V., Morgan, D. J., Cominski, T. P., Ecker, J. L., Pintar, J. E., Sweedler, J. V. & Gillette, M. U., 2010, In: PloS one. 5, 9, p. 1-13 13 p., e12612.

  Research output: Contribution to journal › Article › peer-review

  • Suprachiasmatic Nucleus
  • Gastrin-Releasing Peptide
  • Light
  • Vasoactive Intestinal Peptide
  • Networks (circuits)

• Comparison of sample pre-treatments for laser desorption ionization and secondary ion mass spectrometry imaging of Miscanthus × giganteus

  Li, Z., Bohn, P. W. & Sweedler, J. V., Jul 1 2010, In: Bioresource Technology. 101, 14, p. 5578-5585 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Secondary ion mass spectrometry
  • Ionization
  • Mass spectrometry
  • Desorption
  • ionization

• Composite modulatory feedforward loop contributes to the establishment of a network state

  Wu, J. S., Vilim, F. S., Hatcher, N. G., Due, M. R., Sweedler, J. V., Weiss, K. R. & Jing, J., Apr 2010, In: Journal of neurophysiology. 103, 4, p. 2174-2184 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Interneurons
  • Central Pattern Generators
  • Aplysia
  • Peptides
  • Cheek

• Direct cellular peptidomics of supraoptic magnocellular and hippocampal neurons in low-density cocultures

  Millet, L. J., Bora, A., Sweedler, J. V. & Gillette, M. U., Jan 20 2010, In: ACS Chemical Neuroscience. 1, 1, p. 36-48 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Coculture Techniques
  • Neurons
  • Peptides
  • Neuroglia
  • Cell signaling

• Distinct mechanisms produce functionally complementary actions of neuropeptides that are structurally related but derived from different precursors

  Vilim, F. S., Sasaki, K., Rybak, J., Alexeeva, V., Cropper, E. C., Jing, J., Orekhova, I. V., Brezina, V., Price, D., Romanova, E. V., Rubakhin, S. S., Hatcher, N., Sweedler, J. V. & Weiss, K. R., Jan 6 2010, In: Journal of Neuroscience. 30, 1, p. 131-147 17 p.

  Research output: Contribution to journal › Article › peer-review

  • FMRFamide
  • Neuropeptides
  • arginylphenylalaninamide
  • FMRFamide precursor
  • Sensory Receptor Cells

• Electrokinetic control of fluid transport in gold-coated nanocapillary array membranes in hybrid nanofluidic-microfluidic devices

  Piruska, A., Branagan, S. P., Minnis, A. B., Wang, Z., Cropek, D. M., Sweedler, J. V. & Bohn, P. W., 2010, In: Lab on a chip. 10, 10, p. 1237-1244 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanofluidics
  • Lab-On-A-Chip Devices
  • Neural Cell Adhesion Molecules
  • Gold
  • Microfluidics

• Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry

  Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. U., Sweedler, J. V. & Kelleher, N. L., Feb 2010, In: Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass spectrometry
  • Suprachiasmatic Nucleus
  • Circadian Clocks
  • Rats
  • Tandem Mass Spectrometry

• Feedforward compensation mediated by the central and peripheral actions of a single neuropeptide discovered using representational difference analysis

  Jing, J., Sweedler, J. V., Cropper, E. C., Alexeeva, V., Park, J. H., Romanova, E. V., Xie, F., Dembrow, N. C., Ludwar, B. C., Weiss, K. R. & Vilim, F. S., Dec 8 2010, In: Journal of Neuroscience. 30, 49, p. 16545-16558 14 p.

  Research output: Contribution to journal › Article › peer-review

  • allatotropin
  • Neuropeptides
  • Interneurons
  • Cheek
  • Peptides

• Fishing for the hidden peptidome in health and disease (Drug Abuse)

  Fricker, L. D. & Sweedler, J. V., Dec 2010, In: AAPS Journal. 12, 4, p. 679-682 4 p.

  Research output: Contribution to journal › Review article › peer-review

  • Substance-Related Disorders
  • Health
  • Proteins
  • Peptides
  • Peptide Receptors

• Genome-wide analyses reveal a role for peptide hormones in planarian germline development

  Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A., Oct 2010, In: PLoS biology. 8, 10, e1000509.

  Research output: Contribution to journal › Article › peer-review

  • Planarians
  • Platyhelminths
  • peptide hormones
  • Peptide Hormones
  • Platyhelminthes

• Genome-wide census and expression profiling of chicken neuropeptide and prohormone convertase genes

  Delfino, K. R., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Feb 2010, In: Neuropeptides. 44, 1, p. 31-44 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Proprotein Convertases
  • Censuses
  • Neuropeptides
  • Chickens
  • Genome