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  • Juan J Loor
2011

Dietary lipid during the transition period to manipulate subcutaneous adipose tissue peroxisome proliferator-activated receptor-γ co-regulator and target gene expression

Schmitt, E., Ballou, M. A., Correa, M. N., DePeters, E. J., Drackley, J. K. & Loor, J. J., Dec 2011, In : Journal of Dairy Science. 94, 12, p. 5913-5925 13 p.

Research output: Contribution to journalArticle

Functional adaptations of the transcriptome to mastitis-causing pathogens: The mammary gland and beyond

Loor, J. J., Kasey, M. M. & Massimo Bionaz, B., Dec 1 2011, In : Journal of Mammary Gland Biology and Neoplasia. 16, 4, p. 305-322 18 p.

Research output: Contribution to journalArticle

Gene networks driving bovine mammary protein synthesis during the lactation cycle

Bionaz, M. & Loor, J. J., Jun 13 2011, In : Bioinformatics and Biology Insights. 5, p. 83-98 16 p.

Research output: Contribution to journalArticle

Glucose transporter and hypoxia-associated gene expression in the mammary gland of transition dairy cattle

Mattmiller, S. A., Corl, C. M., Gandy, J. C., Loor, J. J. & Sordillo, L. M., Jun 2011, In : Journal of Dairy Science. 94, 6, p. 2912-2922 11 p.

Research output: Contribution to journalArticle

Mammary Gland: Growth, Development and Involution

Hurley, W. L. & Loor, J. J., Jan 1 2011, Encyclopedia of Dairy Sciences: Second Edition. Elsevier Inc., p. 338-345 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mammary Gland: Gene Networks Controlling Development and Involution

Loor, J. J., Bionaz, M. & Hurley, W. L., Jan 1 2011, Encyclopedia of Dairy Sciences: Second Edition. Elsevier Inc., p. 346-351 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Systems biology and animal nutrition: Insights from the dairy cow during growth and the lactation cycle

Loor, J. J., Bionaz, M. & Invernizzi, G., Oct 10 2011, Systems Biology and Livestock Science. Wiley Blackwell, p. 215-245 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: Validation using the bovine mammary transcriptome

Bionaz, M., Periasamy, K., Rodriguez-Zas, S. L., Hurley, W. L. & Loor, J. J., Mar 16 2012, In : PloS one. 7, 3, e32455.

Research output: Contribution to journalArticle

Application of Top-Down and bottom-up systems approaches in ruminant physiology and metabolism

Shahzad, K. & Loor, J. J., 2012, In : Current Genomics. 13, 5, p. 379-394 16 p.

Research output: Contribution to journalReview article

Bioinformatics analysis of microRNA and putative target genes in bovine mammary tissue infected with Streptococcus uberis

Naeem, A., Zhong, K., Moisá, S. J., Drackley, J. K., Moyes, K. M. & Loor, J. J., Nov 1 2012, In : Journal of Dairy Science. 95, 11, p. 6397-6408 12 p.

Research output: Contribution to journalArticle

Blood immunometabolic indices and polymorphonuclear neutrophil function in peripartum dairy cows are altered by level of dietary energy prepartum

Graugnard, D. E., Bionaz, M., Trevisi, E., Moyes, K. M., Salak-Johnson, J. L., Wallace, R. L., Drackley, J. K., Bertoni, G. & Loor, J. J., Apr 2012, In : Journal of Dairy Science. 95, 4, p. 1749-1758 10 p.

Research output: Contribution to journalArticle

Corium tissue expression of genes associated with inflammation, oxidative stress, and keratin formation in relation to lameness in dairy cows

Osorio, J. S., Fraser, B. C., Graugnard, D. E., Singh, S. S., Drackley, J. K., Garrett, E. F. & Loor, J. J., Nov 2012, In : Journal of Dairy Science. 95, 11, p. 6388-6396 9 p.

Research output: Contribution to journalArticle

Duodenal infusion of α-linolenic acid affects fatty acid metabolism in the mammary gland of lactating dairy cows

Yang, G., Bu, D. P., Wang, J. Q., Khas-Erdene, Zhou, L. Y. & Loor, J. J., Oct 2012, In : Journal of Dairy Science. 95, 10, p. 5821-5830 10 p.

Research output: Contribution to journalArticle

Effect of incremental levels of fish oil supplementation on specific bacterial populations in bovine ruminal fluid

Liu, S. J., Bu, D. P., Wang, J. Q., Liu, L., Liang, S., Wei, H. Y., Zhou, L. Y., Li, D. & Loor, J. J., Feb 1 2012, In : Journal of Animal Physiology and Animal Nutrition. 96, 1, p. 9-16 8 p.

Research output: Contribution to journalArticle

Effects of feeding roasted safflower seeds (variety IL-111) and fish oil on dry matter intake, performance and milk fatty acid profiles in dairy cattle

Alizadeh, A. R., Alikhani, M., Ghorbani, G. R., Rahmani, H. R., Rashidi, L. & Loor, J. J., Jun 1 2012, In : Journal of Animal Physiology and Animal Nutrition. 96, 3, p. 466-473 8 p.

Research output: Contribution to journalArticle

Level of nutrient intake affects mammary gland gene expression profiles in preweaned Holstein heifers

Piantoni, P., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, W. L., Akers, R. M. & Loor, J. J., May 2012, In : Journal of Dairy Science. 95, 5, p. 2550-2561 12 p.

Research output: Contribution to journalArticle

MicroRNA expression patterns in the bovine mammary gland are affected by stage of lactation

Wang, M., Moisá, S., Khan, M. J., Wang, J., Bu, D. & Loor, J. J., Nov 2012, In : Journal of Dairy Science. 95, 11, p. 6529-6535 7 p.

Research output: Contribution to journalArticle

Old and new stories: Revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle

Bionaz, M., Periasamy, K., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Hurley, W. L. & Loor, J. J., Mar 12 2012, In : PloS one. 7, 3, e33268.

Research output: Contribution to journalArticle

Short communication: Endoplasmic reticulum stress gene network expression in bovine mammary tissue during the lactation cycle

Invernizzi, G., Naeem, A. & Loor, J. J., May 2012, In : Journal of Dairy Science. 95, 5, p. 2562-2566 5 p.

Research output: Contribution to journalArticle

2014

Biomarkers of inflammation, metabolism, and oxidative stress in blood, liver, and milk reveal a better immunometabolic status in peripartal cows supplemented with Smartamine M or MetaSmart

Osorio, J. S., Trevisi, E., Ji, P., Drackley, J. K., Luchini, D., Bertoni, G. & Loor, J. J., Dec 1 2014, In : Journal of Dairy Science. 97, 12, p. 7437-7450 14 p.

Research output: Contribution to journalArticle

Central role of the PPARγ gene network in coordinating beef cattle intramuscular adipogenesis in response to weaning age and nutrition

Moisá, S. J., Shike, D. W., Faulkner, D. B., Meteer, W. T., Keisler, D. & Loor, J. J., Jan 8 2014, In : Gene Regulation and Systems Biology. 2014, 8, p. 17-32 16 p.

Research output: Contribution to journalArticle

Effect of dietary starch level and high rumen-undegradable protein on endocrine-metabolic status, milk yield, and milk composition in dairy cows during early and late lactation

Piccioli-Cappelli, F., Loor, J. J., Seal, C. J., Minuti, A. & Trevisi, E., Dec 1 2014, In : Journal of Dairy Science. 97, 12, p. 7788-7803 16 p.

Research output: Contribution to journalArticle

Effects of arginine concentration on the in Vitro expression of casein and mTOR pathway related genes in mammary epithelial cells from dairy cattle

Wang, M., Xu, B., Wang, H., Bu, D., Wang, J. & Loor, J. J., May 1 2014, In : PloS one. 9, 5, e95985.

Research output: Contribution to journalArticle

Gut response induced by weaning in piglet features marked changes in immune and inflammatory response

Bomba, L., Minuti, A., Moisá, S. J., Trevisi, E., Eufemi, E., Lizier, M., Chegdani, F., Lucchini, F., Rzepus, M., Prandini, A., Rossi, F., Mazza, R., Bertoni, G., Loor, J. J. & Ajmone-Marsan, P., Nov 16 2014, In : Functional and Integrative Genomics. 14, 4, p. 657-671 15 p.

Research output: Contribution to journalArticle

Hepatic purinergic signaling gene network expression and its relationship with inflammation and oxidative stress biomarkers in blood from peripartal dairy cattle

Seo, J., Osorio, J. S., Schmitt, E., Corrêa, M. N., Bertoni, G., Trevisi, E. & Loor, J. J., Feb 2014, In : Journal of Dairy Science. 97, 2, p. 861-873 13 p.

Research output: Contribution to journalArticle

High-throughput methods redefine the rumen microbiome and its relationship with nutrition and metabolism

McCann, J. C., Wickersham, T. A. & Loor, J. J., Jun 8 2014, In : Bioinformatics and Biology Insights. 8, p. 109-125 17 p.

Research output: Contribution to journalReview article

ITRAQ-proteomics and bioinformatics analyses of mammary tissue from cows with clinical mastitis due to natural infection with Staphylococci aureus

Huang, J., Luo, G., Zhang, Z., Wang, X., Ju, Z., Qi, C., Zhang, Y., Wang, C., Li, R., Li, J., Yin, W., Xu, Y., Moisá, S. J., Loor, J. J. & Zhong, J., Oct 2 2014, In : BMC genomics. 15, 1, 839.

Research output: Contribution to journalArticle

Linoleic and α-linolenic fatty acid consumption over three generations exert cumulative regulation of hepatic expression of genes related to lipid metabolism

Jacometo, C. B., Schmitt, E., Pfeifer, L. F. M., Schneider, A., Bado, F., Da Rosa, F. T., Halfen, S., Del Pino, F. A. B., Loor, J. J., Corrêa, M. N. & Dionello, N. J. L., Jul 2014, In : Genes and Nutrition. 9, 4, 405.

Research output: Contribution to journalArticle

Lipoprotein lipase, tissue expression and effects on genes related to fatty acid synthesis in goat mammary epithelial cells

Zhao, W. S., Hu, S. L., Yu, K., Wang, H., Wang, W., Loor, J. & Luo, J., Dec 9 2014, In : International journal of molecular sciences. 15, 12, p. 22757-22771 15 p.

Research output: Contribution to journalArticle

Meta-analysis of cancer transcriptomes: A new approach to uncover molecular pathological events in different cancer tissues

Iqbal, S., Ejaz, H., Nawaz, M. S., Loor, J. J. & Naeem, A., Mar 1 2014, In : Network Biology. 4, 1, p. 1-20 20 p.

Research output: Contribution to journalArticle

Overfeeding dairy cattle during late-pregnancy alters hepatic pparα-regulated pathways including hepatokines: Impact on metabolism and peripheral insulin sensitivity

Khan, M. J., Jacometo, C. B., Graugnard, D. E., Corrêa, M. N., Schmitt, E., Cardoso, F. & Loor, J. J., Apr 3 2014, In : Gene Regulation and Systems Biology. 2014, 8, p. 97-111 15 p.

Research output: Contribution to journalArticle

Peroxisome proliferator-activated receptor γ1 and γ2 isoforms alter lipogenic gene networks in goat mammary epithelial cells to different extents

Shi, H. B., Zhao, W. S., Luo, J., Yao, D. W., Sun, Y. T., Li, J., Shi, H. P. & Loor, J. J., Sep 2014, In : Journal of Dairy Science. 97, 9, p. 5437-5447 11 p.

Research output: Contribution to journalArticle

Postpartal immunometabolic gene network expression and function in blood neutrophils are altered in response to prepartal energy intake and postpartal intramammary inflammatory challenge

Moyes, K. M., Graugnard, D. E., Khan, M. J., Mukesh, M. & Loor, J. J., Apr 2014, In : Journal of Dairy Science. 97, 4, p. 2165-2177 13 p.

Research output: Contribution to journalArticle

Postpartal subclinical endometritis alters transcriptome profiles in liver and adipose tissue of dairy cows

Akbar, H., Cardoso, F. C., Meier, S., Burke, C., McDougall, S., Mitchell, M., Walker, C., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Roche, J. R. & Loor, J. J., Feb 19 2014, In : Bioinformatics and Biology Insights. 8, p. 45-63 19 p.

Research output: Contribution to journalArticle

Ratio of lysine to methionine alters expression of genes involved in milk protein transcription and translation and mTOR phosphorylation in bovine mammary cells

Nan, X., Bu, D., Li, X., Wang, J., Wei, H., Hu, H., Zhou, L. & Loor, J. J., Apr 1 2014, In : Physiological genomics. 46, 7, p. 268-275 8 p.

Research output: Contribution to journalArticle

Regulation of energy metabolism by long-chain fatty acids

Nakamura, M. T., Yudell, B. E. & Loor, J. J., Jan 1 2014, In : Progress in Lipid Research. 53, 1, p. 124-144 21 p.

Research output: Contribution to journalReview article

Ruminal epithelium transcriptome dynamics in response to plane of nutrition and age in young Holstein calves

Naeem, A., Drackley, J. K., Lanier, J. S., Everts, R. E., Rodriguez-Zas, S. L. & Loor, J. J., Mar 2014, In : Functional and Integrative Genomics. 14, 1, p. 261-273 13 p.

Research output: Contribution to journalArticle

Treatment with a nonsteroidal antiinflammatory drug after calving did not improve milk production, health, or reproduction parameters in pasture-grazed dairy cows

Meier, S., Priest, N. V., Burke, C. R., Kay, J. K., McDougall, S., Mitchell, M. D., Walker, C. G., Heiser, A., Loor, J. J. & Roche, J. R., May 2014, In : Journal of Dairy Science. 97, 5, p. 2932-2943 12 p.

Research output: Contribution to journalArticle

Visceral adipose tissue mass in nonlactating dairy cows fed diets differing in energy density1

Drackley, J. K., Wallace, R. L., Graugnard, D., Vasquez, J., Richards, B. F. & Loor, J. J., Jun 2014, In : Journal of Dairy Science. 97, 6, p. 3420-3430 11 p.

Research output: Contribution to journalArticle