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• 2021

  Accumbofrontal tract integrity is related to early life adversity and feedback learning

  Kennedy, B. V., Hanson, J. L., Buser, N. J., van den Bos, W., Rudolph, K. D., Davidson, R. J. & Pollak, S. D., Dec 2021, In: Neuropsychopharmacology. 46, 13, p. 2288-2294 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Accurate Large-scale Phylogeny-Aware Alignment using BAli-Phy

  Gupta, M., Zaharias, P. & Warnow, T., Dec 15 2021, In: Bioinformatics (Oxford, England). 37, 24, p. 4677-4683 7 p.

  Research output: Contribution to journal › Article › peer-review

• Accurate quantification and detection of Septoria glycines in soybean using quantitative PCR

  Lin, H. A. & Mideros, S. X., Jan 2021, In: Current Plant Biology. 25, 100192.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• ACE2-Based Decoy Receptors for SARS Coronavirus 2

  Jing, W. & Procko, E., Sep 2021, In: Proteins. 89, 9, p. 1065-1078 14 p.

  Research output: Contribution to journal › Review article › peer-review

• ACeD: Scalable Data Availability Oracle

  Sheng, P., Xue, B., Kannan, S. & Viswanath, P., 2021, Financial Cryptography and Data Security - 25th International Conference, FC 2021, Revised Selected Papers. Borisov, N. & Diaz, C. (eds.). Springer, p. 299-318 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12675 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A characteristic optical variability time scale in astrophysical accretion disks

  Burke, C. J., Shen, Y., Blaes, O., Gammie, C. F., Horne, K., Jiang, Y. F., Liu, X., McHardy, I. M., Morgan, C. W., Scaringi, S. & Yang, Q., Aug 13 2021, In: Science. 373, 6556, p. 789-792 4 p.

  Research output: Contribution to journal › Article › peer-review

• A Checklist to Assess Childbearing Intentions and Promote Referral to Preconception Care or Contraception: A Multi-Site Study

  Mirabal-Beltran, R., Anderson, J., Dariotis, J. K. & Finocchario-Kessler, S., May 2021, In: Maternal and child health journal. 25, 5, p. 786-795 10 p.

  Research output: Contribution to journal › Article › peer-review

• Achieving a quantum smart workforce

  Aiello, C. D., Awschalom, D. D., Bernien, H., Brower, T., Brown, K. R., Brun, T. A., Caram, J. R., Chitambar, E., Di Felice, R., Edmonds, K. M., Fox, M. F. J., Haas, S., Holleitner, A. W., Hudson, E. R., Hunt, J. H., Joynt, R., Koziol, S., Larsen, M., Lewandowski, H. J., McClure, D. T., & 14 othersPalsberg, J., Passante, G., Pudenz, K. L., Richardson, C. J. K., Rosenberg, J. L., Ross, R. S., Saffman, M., Singh, M., Steuerman, D. W., Stark, C., Thijssen, J., Vamivakas, A. N., Whitfield, J. D. & Zwickl, B. M., Jul 2021, In: Quantum Science and Technology. 6, 3, 030501.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• A chromosomal assembly of the soybean cyst nematode genome

  Masonbrink, R. E., Maier, T. R., Hudson, M., Severin, A. & Baum, T., Oct 2021, In: Molecular ecology resources. 21, 7, p. 2407-2422 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Acid resistance of metakaolin-based, bamboo fiber geopolymer composites

  Sá Ribeiro, M. G., Sá Ribeiro, M. G., Keane, P. F., Sardela, M. R., Kriven, W. M. & Sá Ribeiro, R. A., Oct 4 2021, In: Construction and Building Materials. 302, 124194.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A CNN based vision-proprioception fusion method for robust UGV Terrain classification

  Chen, Y., Rastogi, C. & Norris, W. R., Oct 2021, In: IEEE Robotics and Automation Letters. 6, 4, p. 7965-7972 8 p., 9507312.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A Coalitional Cyber-Insurance Design Considering Power System Reliability and Cyber Vulnerability

  Lau, P., Wang, L., Liu, Z., Wei, W. & Ten, C. W., Nov 1 2021, In: IEEE Transactions on Power Systems. 36, 6, p. 5512-5524 13 p.

  Research output: Contribution to journal › Article › peer-review

• A College Entrance Essay Exam Intervention for Students With High-Incidence Disabilities and Struggling Writers

  Ray, A. B. & Graham, S., Nov 2021, In: Learning Disability Quarterly. 44, 4, p. 275-287 13 p.

  Research output: Contribution to journal › Article › peer-review

• A combination of cross-neutralizing antibodies synergizes to prevent SARS-CoV-2 and SARS-CoV pseudovirus infection

  Liu, H., Yuan, M., Huang, D., Bangaru, S., Zhao, F., Lee, C. C. D., Peng, L., Barman, S., Zhu, X., Nemazee, D., Burton, D. R., van Gils, M. J., Sanders, R. W., Kornau, H. C., Reincke, S. M., Prüss, H., Kreye, J., Wu, N. C., Ward, A. B. & Wilson, I. A., May 12 2021, In: Cell Host and Microbe. 29, 5, p. 806-818.e6

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

  SMC-RNA Challenge Participants & Ahsen, M. E., Aug 18 2021, In: Cell Systems. 12, 8, p. 827-838.e5

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A community resource for paired genomic and metabolomic data mining

  Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A., Brejnrod, A., & 90 othersBugni, T. S., Calteau, A., Cao, L., Carrión, V. J., Castelo-Branco, R., Chanana, S., Chase, A. B., Chevrette, M. G., Costa-Lotufo, L. V., Crawford, J. M., Currie, C. R., Cuypers, B., Dang, T., de Rond, T., Demko, A. M., Dittmann, E., Du, C., Drozd, C., Dujardin, J. C., Dutton, R. J., Edlund, A., Fewer, D. P., Garg, N., Gauglitz, J. M., Gentry, E. C., Gerwick, L., Glukhov, E., Gross, H., Gugger, M., Guillén Matus, D. G., Helfrich, E. J. N., Hempel, B. F., Hur, J. S., Iorio, M., Jensen, P. R., Kang, K. B., Kaysser, L., Kelleher, N. L., Kim, C. S., Kim, K. H., Koester, I., König, G. M., Leao, T., Lee, S. R., Lee, Y. Y., Li, X., Little, J. C., Maloney, K. N., Männle, D., Martin H, C., McAvoy, A. C., Metcalf, W. W., Mohimani, H., Molina-Santiago, C., Moore, B. S., Mullowney, M. W., Muskat, M., Nothias, L. F., O’Neill, E. C., Parkinson, E. I., Petras, D., Piel, J., Pierce, E. C., Pires, K., Reher, R., Romero, D., Roper, M. C., Rust, M., Saad, H., Saenz, C., Sanchez, L. M., Sørensen, S. J., Sosio, M., Süssmuth, R. D., Sweeney, D., Tahlan, K., Thomson, R. J., Tobias, N. J., Trindade-Silva, A. E., van Wezel, G. P., Wang, M., Weldon, K. C., Zhang, F., Ziemert, N., Duncan, K. R., Crüsemann, M., Rogers, S., Dorrestein, P. C., Medema, M. H. & van der Hooft, J. J. J., Apr 2021, In: Nature chemical biology. 17, 4, p. 363-368 6 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

• A Community Roadmap for Scientific Workflows Research and Development

  Da Silva, R. F., Casanova, H., Chard, K., Altintas, I., Badia, R. M., Balis, B., Coleman, T., Coppens, F., Di Natale, F., Enders, B., Fahringer, T., Filgueira, R., Fursin, G., Garijo, D., Goble, C., Howell, D., Jha, S., Katz, D. S., Laney, D., Leser, U., & 9 othersMalawski, M., Mehta, K., Pottier, L., Ozik, J., Luc Peterson, J., Ramakrishnan, L., Soiland-Reyes, S., Thain, D. & Wolf, M., 2021, Proceedings of WORKS 2021: 16th Workshop on Workflows in Support of Large-Scale Science, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 81-90 10 p. (Proceedings of WORKS 2021: 16th Workshop on Workflows in Support of Large-Scale Science, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A compact photonic resonator absorption microscope for point of care digital resolution nucleic acid molecular diagnostics

  Ghosh, S., Li, N., Xiong, Y., Ju, Y. G., Rathslag, M. P., Onal, E. G., Falkiewicz, E., Kohli, M. & Cunningham, B. T., Aug 1 2021, In: Biomedical Optics Express. 12, 8, p. 4637-4650 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A comparative phenotypic and genomic analysis of Clostridium beijerinckii mutant with enhanced solvent production

  Seo, S. O., Lu, T., Jin, Y. S. & Blaschek, H. P., Mar 10 2021, In: Journal of Biotechnology. 329, p. 49-55 7 p.

  Research output: Contribution to journal › Article › peer-review

• A comparative study of the structural and mechanical properties of avian eggshells among hosts of obligate brood parasitic cowbirds (genus Molothrus)

  López, A. V., Reboreda, J. C., Fiorini, V. D., Gerschenson, L. N. & Hauber, M. E., Aug 1 2021, In: Biological Journal of the Linnean Society. 133, 4, p. 1057-1076 20 p.

  Research output: Contribution to journal › Article › peer-review

• A Comparison Between Joint Space and Task Space Mappings for Dynamic Teleoperation of an Anthropomorphic Robotic Arm in Reaction Tests

  Wang, S., Murphy, K., Kenney, D. & Ramos, J., 2021, 2021 IEEE International Conference on Robotics and Automation, ICRA 2021. Institute of Electrical and Electronics Engineers Inc., p. 2846-2852 7 p. (Proceedings - IEEE International Conference on Robotics and Automation; vol. 2021-May).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A Comparison of Novice Coders' Approaches to Reading Code: An Eye-tracking Study

  Herman, G. L., Meyers, S. & Deshaies, S-E., Jul 26 2021, In: ASEE Annual Conference and Exposition, Conference Proceedings.

  Research output: Contribution to journal › Conference article › peer-review

• A Comparison of Three Approaches for Measuring Negative Cognitions for Psychological Reactance

  Reynolds-Tylus, T., Bigsby, E. & Quick, B. L., 2021, In: Communication Methods and Measures. 15, 1, p. 43-59 17 p.

  Research output: Contribution to journal › Article › peer-review

• A comparison of total and domain-specific sedentary time in breast cancer survivors and age-matched healthy controls

  Tabaczynski, A., Whitehorn, A., McAuley, E. & Trinh, L., Apr 2021, In: Journal of Behavioral Medicine. 44, 2, p. 277-283 7 p.

  Research output: Contribution to journal › Article › peer-review

• A comparison of two data sets used to measure expenditure trends for local public park and recreation services

  Zou, S. & Crompton, J. L., Aug 9 2021, In: Journal of Park and Recreation Administration. 39, 3, p. 20-36 17 p.

  Research output: Contribution to journal › Article › peer-review

• A comparison study on infant-parent voice diarization

  Zhu, J., Hasegawa-Johnson, M. & McElwain, N. L., 2021, In: ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings. 2021-June, p. 7178-7182 5 p.

  Research output: Contribution to journal › Conference article › peer-review

• A Complete Semantics of K and Its Translation to Isabelle

  Li, L. & Gunter, E. L., 2021, Theoretical Aspects of Computing – ICTAC 2021 - 18th International Colloquium, Proceedings. Cerone, A. & Olveczky, P. C. (eds.). Springer, p. 152-171 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12819 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A complex network framework for the efficiency and resilience trade-off in global food trade

  Karakoc, D. B. & Konar, M., Oct 2021, In: Environmental Research Letters. 16, 10, 105003.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A comprehensive modeling framework to evaluate soil erosion by water and tillage

  Lee, S., Chu, M. L., Guzman, J. A. & Botero-Acosta, A., Feb 1 2021, In: Journal of Environmental Management. 279, 111631.

  Research output: Contribution to journal › Article › peer-review

• A comprehensive review of educational articles on structural and multidisciplinary optimization

  Wang, C., Zhao, Z., Zhou, M., Sigmund, O. & Zhang, X. S., Nov 2021, In: Structural and Multidisciplinary Optimization. 64, 5, p. 2827-2880 54 p.

  Research output: Contribution to journal › Review article › peer-review

• A comprehensive survey of inverse uncertainty quantification of physical model parameters in nuclear system thermal–hydraulics codes

  Wu, X., Xie, Z., Alsafadi, F. & Kozlowski, T., Dec 1 2021, In: Nuclear Engineering and Design. 384, 111460.

  Research output: Contribution to journal › Review article › peer-review

• A comprehensive uncertainty quantification of large-scale process-based crop modeling frameworks

  Dokoohaki, H., Kivi, M. S., Martinez-Feria, R., Miguez, F. E. & Hoogenboom, G., Aug 2021, In: Environmental Research Letters. 16, 8, 084010.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A Concurrent Entity Component System for Geographical Wildlife Epidemiological Modeling

  Davis, A. V. & Wang, S., Oct 2021, In: Geographical Analysis. 53, 4, p. 836-868 33 p.

  Research output: Contribution to journal › Article › peer-review

• A Conformer-Dependent, Quantitative Quadrant Model

  Zahrt, A. F., Rinehart, N. I. & Denmark, S. E., May 7 2021, In: European Journal of Organic Chemistry. 2021, 17, p. 2343-2354 12 p.

  Research output: Contribution to journal › Article › peer-review

• A conservative level set method for N-phase flows with a free-energy-based surface tension model

  Howard, A. A. & Tartakovsky, A. M., Feb 1 2021, In: Journal of Computational Physics. 426, 109955.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A conserved and seemingly redundant Escherichia coli biotin biosynthesis gene expressed only during anaerobic growth

  Song, X. & Cronan, J. E., Nov 2021, In: Molecular Microbiology. 116, 5, p. 1315-1327 13 p.

  Research output: Contribution to journal › Article › peer-review

• A Consideration of the Evaluation of Demonstration Projects to End Childhood Hunger (EDECH)

  Gundersen, C., Jan 2021, In: Journal of the Academy of Nutrition and Dietetics. 121, 1, p. S78-S80

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A Contextual Innovation and Process Investigation of an International Student Entrepreneurial Organization

  Lake, R. E., Altenberg, J. B., Rzonca, A., Hashem, K. & Witmer, A. P., Jul 26 2021, In: ASEE Annual Conference and Exposition, Conference Proceedings.

  Research output: Contribution to journal › Conference article › peer-review

• A Contrastive Learning Approach for Training Variational Autoencoder Priors

  Aneja, J., Schwing, A. G., Kautz, J. & Vahdat, A., 2021, Advances in Neural Information Processing Systems 34 - 35th Conference on Neural Information Processing Systems, NeurIPS 2021. Ranzato, MA., Beygelzimer, A., Dauphin, Y., Liang, P. S. & Wortman Vaughan, J. (eds.). Neural information processing systems foundation, p. 480-493 14 p. (Advances in Neural Information Processing Systems; vol. 1).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A cool and inflated progenitor candidate for the Type Ib supernova 2019yvr at 2.6 yr before explosion

  Kilpatrick, C. D., Drout, M. R., Auchettl, K., DImitriadis, G., Foley, R. J., Jones, D. O., Demarchi, L., French, K. D., Gall, C., Hjorth, J., Jacobson-Galán, W. V., Margutti, R., Piro, A. L., Ramirez-Ruiz, E., Rest, A. & Rojas-Bravo, C., Jun 1 2021, In: Monthly Notices of the Royal Astronomical Society. 504, 2, p. 2073-2093 21 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A cost–based analysis for risk–averse explore–then–commit finite–time bandits

  Yekkehkhany, A., Arian, E., Nagi, R. & Shomorony, I., 2021, In: IISE Transactions. 53, 10, p. 1094-1108 15 p.

  Research output: Contribution to journal › Article › peer-review

• Acoustic Loss in Thin-Film Lithium Niobate: An Experimental Study

  Lu, R., Yang, Y. & Gong, S., Aug 2021, In: Journal of Microelectromechanical Systems. 30, 4, p. 632-641 10 p., 9469880.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Acoustic Loss of GHz Higher-Order Lamb Waves in Thin-Film Lithium Niobate: A Comparative Study

  Lu, R., Yang, Y. & Gong, S., Dec 1 2021, In: Journal of Microelectromechanical Systems. 30, 6, p. 876-884 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Acoustic-Perceptual Correlates of Voice Among Steam Train Engineers: Effects of Noise and Hearing Protection

  Anand, S., Gutierrez, D. & Bottalico, P., 2021, (Accepted/In press) In: Journal of Voice.

  Research output: Contribution to journal › Article › peer-review

• Acoustogenic Probes: A Demonstration to Introduce the Photoacoustic Effect via Analyte Sensing

  Tapia Hernandez, R., Forzano, J. A., Lucero, M. Y., Anorma, C. & Chan, J., Aug 10 2021, In: Journal of Chemical Education. 98, 8, p. 2618-2624 7 p.

  Research output: Contribution to journal › Article › peer-review

• A creative destruction approach to replication: Implicit work and sex morality across cultures

  Culture & Work Morality Forecasting Collaboration, Mar 2021, In: Journal of Experimental Social Psychology. 93, 104060.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A Critical Review about Different Vaccines against Classical Swine Fever Virus and Their Repercussions in Endemic Regions

  Coronado, L., Perera, C. L., Rios, L., Frías, M. T. & Pérez, L. J., Feb 15 2021, In: Vaccines. 9, 2, p. 1-35 35 p., 154.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• A Critical Review of the Physicochemical Impacts of Water Chemistry on Shale in Hydraulic Fracturing Systems

  Khan, H. J., Spielman-Sun, E., Jew, A. D., Bargar, J., Kovscek, A. & Druhan, J. L., Feb 2 2021, In: Environmental science & technology. 55, 3, p. 1377-1394 18 p.

  Research output: Contribution to journal › Article › peer-review

• A critical review on thermal treatment technologies of combustible fractions from mechanical biological treatment plants

  Goli, V. S. N. S., Singh, D. N. & Baser, T., Aug 2021, In: Journal of Environmental Chemical Engineering. 9, 4, 105643.

  Research output: Contribution to journal › Review article › peer-review

• A cross-neutralizing antibody between HIV-1 and influenza virus

  Leei, C. C. D., Watanabe, Y., Wu, N. C., Han, J., Kumar, S., Pholcharee, T., Seabright, G. E., Alleni, J. D., Lin, C. W., Yang, J. R., Liu, M. T., Wu, C. Y., Ward, A. B., Crispini, M. & Wilsoni, I. A., Mar 2021, In: PLoS pathogens. 17, 3, 1009407.

  Research output: Contribution to journal › Article › peer-review

  Open Access