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• 2021

  Accelerating Distributed-memory Autotuning via Statistical Analysis of Execution Paths

  Hutter, E. & Solomonik, E., May 2021, Proceedings - 2021 IEEE 35th International Parallel and Distributed Processing Symposium, IPDPS 2021. Institute of Electrical and Electronics Engineers Inc., p. 46-57 12 p. 9460475. (Proceedings - 2021 IEEE 35th International Parallel and Distributed Processing Symposium, IPDPS 2021).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Accelerating DNN Architecture Search at Scale Using Selective Weight Transfer

  Liu, H., Nicolae, B., Di, S., Cappello, F. & Jog, A., 2021, Proceedings - 2021 IEEE International Conference on Cluster Computing, Cluster 2021. Institute of Electrical and Electronics Engineers Inc., p. 82-93 12 p. (Proceedings - IEEE International Conference on Cluster Computing, ICCC; vol. 2021-September).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Accelerating Fourier and Number Theoretic Transforms using Tensor Cores and Warp Shuffles

  Durrani, S., Chughtai, M. S., Hidayetoglu, M., Tahir, R., Dakkak, A., Rauchwerger, L., Zaffar, F. & Hwu, W. M., 2021, Proceedings - 30th International Conference on Parallel Architectures and Compilation Techniques, PACT 2021. Lee, J. & Cohen, A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 345-355 11 p. (Parallel Architectures and Compilation Techniques - Conference Proceedings, PACT; vol. 2021-September).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Accelerating Messages by Avoiding Copies in an Asynchronous Task-based Programming Model

  Bhat, N., White, S., Ramos, E. & Kale, L. V., 2021, Proceedings of ESPM2 2021: 6th International IEEE Workshop on Extreme Scale Programming Models and Middleware, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 10-19 10 p. (Proceedings of ESPM2 2021: 6th International IEEE Workshop on Extreme Scale Programming Models and Middleware, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Accelerating Mobile Applications with Parallel High-bandwidth and Low-latency Channels

  Sentosa, W., Chandrasekaran, B., Brighten Godfrey, P., Hassanieh, H., Maggs, B. & Singla, A., Feb 24 2021, HotMobile 2021 - Proceedings of the 22nd International Workshop on Mobile Computing Systems and Applications. Association for Computing Machinery, Inc, p. 1-7 7 p. (HotMobile 2021 - Proceedings of the 22nd International Workshop on Mobile Computing Systems and Applications).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets

  Kille, B., Liu, Y., Sapoval, N., Nute, M., Rauchwerger, L., Amato, N. & Treangen, T. J., Jun 2021, 2021 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2021 - In conjunction with IEEE IPDPS 2021. Institute of Electrical and Electronics Engineers Inc., p. 204-208 5 p. 9460605. (2021 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2021 - In conjunction with IEEE IPDPS 2021).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Accelerating T2 mapping of the brain by integrating deep learning priors with low-rank and sparse modeling

  Meng, Z., Guo, R., Li, Y., Guan, Y., Wang, T., Zhao, Y., Sutton, B., Li, Y. & Liang, Z-P., Mar 2021, In: Magnetic Resonance in Medicine. 85, 3, p. 1455-1467 13 p.

  Research output: Contribution to journal › Article › peer-review

• Accelerating the Rate of Progress in Reducing Mental Health Burdens: Recommendations for Training the Next Generation of Clinical Psychologists

  Berenbaum, H., Washburn, J. J., Sbarra, D., Reardon, K. W., Schuler, T., Teachman, B. A., Hollon, S. D., Atkins, M. S., Hamilton, J. L., Hetrick, W. P., Tackett, J. L., Cody, M. W., Klepac, R. K. & Lee, S. S., 2021, In: Clinical Psychology: Science and Practice. 28, 2, p. 107-123 17 p.

  Research output: Contribution to journal › Article › peer-review

• Access to Daylight and Views Improves Physical and Emotional Wellbeing of Office Workers: A Crossover Study

  Woo, M., MacNaughton, P., Lee, J., Tinianov, B., Satish, U. & Boubekri, M., Sep 8 2021, In: Frontiers in Sustainable Cities. 3, 690055.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Access to the trade: Monopoly and mobility in european craft guilds in the seventeenth and eighteenth centuries

  Prak, M., Crowston, C. H., de Munck, B., Kissane, C., Minns, C., Schalk, R. & Wallis, P., 2021, In: Journal of Social History. 54, 2, p. 421-452 32 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• AccGuard: Secure and Trusted Computation on Remote FPGA Accelerators

  Ren, W., Pan, J. & Chen, D., 2021, Proceedings - 2021 IEEE International Symposium on Smart Electronic Systems, iSES 2021. Institute of Electrical and Electronics Engineers Inc., p. 378-383 6 p. (Proceedings - 2021 IEEE International Symposium on Smart Electronic Systems, iSES 2021).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Accommodating Casting and Fixturing Errors by Adjusting the Machining Coordinate Frame

  Ko, H. W., Chen, Y., Lee, N., Bhapkar, R., Kapoor, S. & Ferreira, P., Apr 2021, In: Journal of Computing and Information Science in Engineering. 21, 2, 4048716.

  Research output: Contribution to journal › Article › peer-review

• Accounting for Democracy: Excessive Subjects in a State of Consensus

  Delgado, L. E., Aug 1 2021, In: Boundary 2. 48, 3, p. 115-144 30 p.

  Research output: Contribution to journal › Article › peer-review

• Accounting for global value chains: rising global inequality in the wake of COVID-19?

  Court, C. D., Ferreira, J. P., Hewings, G. J. D. & Lahr, M. L., 2021, In: International Review of Applied Economics. 35, 6, p. 813-831 19 p.

  Research output: Contribution to journal › Article › peer-review

• Accretion disc cooling and narrow absorption lines in the tidal disruption event at 2019dsg

  Cannizzaro, G., Wevers, T., Jonker, P. G., Pérez-Torres, M. A., Moldon, J., Mata-Sánchez, D., Leloudas, G., Pasham, D. R., Mattila, S., Arcavi, I., Decker French, K., Onori, F., Inserra, C., Nicholl, M., Gromadzki, M., Chen, T. W., Müller-Bravo, T. E., Short, P., Anderson, J. P., Young, D. R., & 6 othersGendreau, K. C., Arzoumanian, Z., Löwenstein, M., Remillard, R., Roy, R. & Hiramatsu, D., Jun 1 2021, In: Monthly Notices of the Royal Astronomical Society. 504, 1, p. 792-815 24 p.

  Research output: Contribution to journal › Article › peer-review

• Accretion onto a small black hole at the center of a neutron star

  Richards, C. B., Baumgarte, T. W. & Shapiro, S. L., May 6 2021, In: Physical Review D. 103, 10, 104009.

  Research output: Contribution to journal › Article › peer-review

• Accretion onto black holes inside neutron stars with piecewise-polytropic equations of state: Analytic and numerical treatments

  Schnauck, S. C., Baumgarte, T. W. & Shapiro, S. L., Dec 15 2021, In: Physical Review D. 104, 12, 123021.

  Research output: Contribution to journal › Article › peer-review

• Accumbofrontal tract integrity is related to early life adversity and feedback learning

  Kennedy, B. V., Hanson, J. L., Buser, N. J., van den Bos, W., Rudolph, K. D., Davidson, R. J. & Pollak, S. D., Dec 2021, In: Neuropsychopharmacology. 46, 13, p. 2288-2294 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Accurate Large-scale Phylogeny-Aware Alignment using BAli-Phy

  Gupta, M., Zaharias, P. & Warnow, T., Dec 15 2021, In: Bioinformatics (Oxford, England). 37, 24, p. 4677-4683 7 p.

  Research output: Contribution to journal › Article › peer-review

• Accurate quantification and detection of Septoria glycines in soybean using quantitative PCR

  Lin, H. A. & Mideros, S. X., Jan 2021, In: Current Plant Biology. 25, 100192.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• ACE2-Based Decoy Receptors for SARS Coronavirus 2

  Jing, W. & Procko, E., Sep 2021, In: Proteins. 89, 9, p. 1065-1078 14 p.

  Research output: Contribution to journal › Review article › peer-review

• ACeD: Scalable Data Availability Oracle

  Sheng, P., Xue, B., Kannan, S. & Viswanath, P., 2021, Financial Cryptography and Data Security - 25th International Conference, FC 2021, Revised Selected Papers. Borisov, N. & Diaz, C. (eds.). Springer, p. 299-318 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12675 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A characteristic optical variability time scale in astrophysical accretion disks

  Burke, C. J., Shen, Y., Blaes, O., Gammie, C. F., Horne, K., Jiang, Y. F., Liu, X., McHardy, I. M., Morgan, C. W., Scaringi, S. & Yang, Q., Aug 13 2021, In: Science. 373, 6556, p. 789-792 4 p.

  Research output: Contribution to journal › Article › peer-review

• A Checklist to Assess Childbearing Intentions and Promote Referral to Preconception Care or Contraception: A Multi-Site Study

  Mirabal-Beltran, R., Anderson, J., Dariotis, J. K. & Finocchario-Kessler, S., May 2021, In: Maternal and child health journal. 25, 5, p. 786-795 10 p.

  Research output: Contribution to journal › Article › peer-review

• Achieving a quantum smart workforce

  Aiello, C. D., Awschalom, D. D., Bernien, H., Brower, T., Brown, K. R., Brun, T. A., Caram, J. R., Chitambar, E., Di Felice, R., Edmonds, K. M., Fox, M. F. J., Haas, S., Holleitner, A. W., Hudson, E. R., Hunt, J. H., Joynt, R., Koziol, S., Larsen, M., Lewandowski, H. J., McClure, D. T., & 14 othersPalsberg, J., Passante, G., Pudenz, K. L., Richardson, C. J. K., Rosenberg, J. L., Ross, R. S., Saffman, M., Singh, M., Steuerman, D. W., Stark, C., Thijssen, J., Vamivakas, A. N., Whitfield, J. D. & Zwickl, B. M., Jul 2021, In: Quantum Science and Technology. 6, 3, 030501.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• A chromosomal assembly of the soybean cyst nematode genome

  Masonbrink, R. E., Maier, T. R., Hudson, M., Severin, A. & Baum, T., Oct 2021, In: Molecular ecology resources. 21, 7, p. 2407-2422 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Acid resistance of metakaolin-based, bamboo fiber geopolymer composites

  Sá Ribeiro, M. G., Sá Ribeiro, M. G., Keane, P. F., Sardela, M. R., Kriven, W. M. & Sá Ribeiro, R. A., Oct 4 2021, In: Construction and Building Materials. 302, 124194.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A CNN based vision-proprioception fusion method for robust UGV Terrain classification

  Chen, Y., Rastogi, C. & Norris, W. R., Oct 2021, In: IEEE Robotics and Automation Letters. 6, 4, p. 7965-7972 8 p., 9507312.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A Coalitional Cyber-Insurance Design Considering Power System Reliability and Cyber Vulnerability

  Lau, P., Wang, L., Liu, Z., Wei, W. & Ten, C. W., Nov 1 2021, In: IEEE Transactions on Power Systems. 36, 6, p. 5512-5524 13 p.

  Research output: Contribution to journal › Article › peer-review

• A College Entrance Essay Exam Intervention for Students With High-Incidence Disabilities and Struggling Writers

  Ray, A. B. & Graham, S., Nov 2021, In: Learning Disability Quarterly. 44, 4, p. 275-287 13 p.

  Research output: Contribution to journal › Article › peer-review

• A combination of cross-neutralizing antibodies synergizes to prevent SARS-CoV-2 and SARS-CoV pseudovirus infection

  Liu, H., Yuan, M., Huang, D., Bangaru, S., Zhao, F., Lee, C. C. D., Peng, L., Barman, S., Zhu, X., Nemazee, D., Burton, D. R., van Gils, M. J., Sanders, R. W., Kornau, H. C., Reincke, S. M., Prüss, H., Kreye, J., Wu, N. C., Ward, A. B. & Wilson, I. A., May 12 2021, In: Cell Host and Microbe. 29, 5, p. 806-818.e6

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

  SMC-RNA Challenge Participants & Ahsen, M. E., Aug 18 2021, In: Cell Systems. 12, 8, p. 827-838.e5

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A community resource for paired genomic and metabolomic data mining

  Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A., Brejnrod, A., & 90 othersBugni, T. S., Calteau, A., Cao, L., Carrión, V. J., Castelo-Branco, R., Chanana, S., Chase, A. B., Chevrette, M. G., Costa-Lotufo, L. V., Crawford, J. M., Currie, C. R., Cuypers, B., Dang, T., de Rond, T., Demko, A. M., Dittmann, E., Du, C., Drozd, C., Dujardin, J. C., Dutton, R. J., Edlund, A., Fewer, D. P., Garg, N., Gauglitz, J. M., Gentry, E. C., Gerwick, L., Glukhov, E., Gross, H., Gugger, M., Guillén Matus, D. G., Helfrich, E. J. N., Hempel, B. F., Hur, J. S., Iorio, M., Jensen, P. R., Kang, K. B., Kaysser, L., Kelleher, N. L., Kim, C. S., Kim, K. H., Koester, I., König, G. M., Leao, T., Lee, S. R., Lee, Y. Y., Li, X., Little, J. C., Maloney, K. N., Männle, D., Martin H, C., McAvoy, A. C., Metcalf, W. W., Mohimani, H., Molina-Santiago, C., Moore, B. S., Mullowney, M. W., Muskat, M., Nothias, L. F., O’Neill, E. C., Parkinson, E. I., Petras, D., Piel, J., Pierce, E. C., Pires, K., Reher, R., Romero, D., Roper, M. C., Rust, M., Saad, H., Saenz, C., Sanchez, L. M., Sørensen, S. J., Sosio, M., Süssmuth, R. D., Sweeney, D., Tahlan, K., Thomson, R. J., Tobias, N. J., Trindade-Silva, A. E., van Wezel, G. P., Wang, M., Weldon, K. C., Zhang, F., Ziemert, N., Duncan, K. R., Crüsemann, M., Rogers, S., Dorrestein, P. C., Medema, M. H. & van der Hooft, J. J. J., Apr 2021, In: Nature chemical biology. 17, 4, p. 363-368 6 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

• A Community Roadmap for Scientific Workflows Research and Development

  Da Silva, R. F., Casanova, H., Chard, K., Altintas, I., Badia, R. M., Balis, B., Coleman, T., Coppens, F., Di Natale, F., Enders, B., Fahringer, T., Filgueira, R., Fursin, G., Garijo, D., Goble, C., Howell, D., Jha, S., Katz, D. S., Laney, D., Leser, U., & 9 othersMalawski, M., Mehta, K., Pottier, L., Ozik, J., Luc Peterson, J., Ramakrishnan, L., Soiland-Reyes, S., Thain, D. & Wolf, M., 2021, Proceedings of WORKS 2021: 16th Workshop on Workflows in Support of Large-Scale Science, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 81-90 10 p. (Proceedings of WORKS 2021: 16th Workshop on Workflows in Support of Large-Scale Science, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A compact photonic resonator absorption microscope for point of care digital resolution nucleic acid molecular diagnostics

  Ghosh, S., Li, N., Xiong, Y., Ju, Y. G., Rathslag, M. P., Onal, E. G., Falkiewicz, E., Kohli, M. & Cunningham, B. T., Aug 1 2021, In: Biomedical Optics Express. 12, 8, p. 4637-4650 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A comparative phenotypic and genomic analysis of Clostridium beijerinckii mutant with enhanced solvent production

  Seo, S. O., Lu, T., Jin, Y. S. & Blaschek, H. P., Mar 10 2021, In: Journal of Biotechnology. 329, p. 49-55 7 p.

  Research output: Contribution to journal › Article › peer-review

• A comparative study of the structural and mechanical properties of avian eggshells among hosts of obligate brood parasitic cowbirds (genus Molothrus)

  López, A. V., Reboreda, J. C., Fiorini, V. D., Gerschenson, L. N. & Hauber, M. E., Aug 1 2021, In: Biological Journal of the Linnean Society. 133, 4, p. 1057-1076 20 p.

  Research output: Contribution to journal › Article › peer-review

• A Comparison Between Joint Space and Task Space Mappings for Dynamic Teleoperation of an Anthropomorphic Robotic Arm in Reaction Tests

  Wang, S., Murphy, K., Kenney, D. & Ramos, J., 2021, 2021 IEEE International Conference on Robotics and Automation, ICRA 2021. Institute of Electrical and Electronics Engineers Inc., p. 2846-2852 7 p. (Proceedings - IEEE International Conference on Robotics and Automation; vol. 2021-May).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A Comparison of Novice Coders' Approaches to Reading Code: An Eye-tracking Study

  Herman, G. L., Meyers, S. & Deshaies, S-E., Jul 26 2021, In: ASEE Annual Conference and Exposition, Conference Proceedings.

  Research output: Contribution to journal › Conference article › peer-review

• A Comparison of Three Approaches for Measuring Negative Cognitions for Psychological Reactance

  Reynolds-Tylus, T., Bigsby, E. & Quick, B. L., 2021, In: Communication Methods and Measures. 15, 1, p. 43-59 17 p.

  Research output: Contribution to journal › Article › peer-review

• A comparison of total and domain-specific sedentary time in breast cancer survivors and age-matched healthy controls

  Tabaczynski, A., Whitehorn, A., McAuley, E. & Trinh, L., Apr 2021, In: Journal of Behavioral Medicine. 44, 2, p. 277-283 7 p.

  Research output: Contribution to journal › Article › peer-review

• A comparison of two data sets used to measure expenditure trends for local public park and recreation services

  Zou, S. & Crompton, J. L., Aug 9 2021, In: Journal of Park and Recreation Administration. 39, 3, p. 20-36 17 p.

  Research output: Contribution to journal › Article › peer-review

• A comparison study on infant-parent voice diarization

  Zhu, J., Hasegawa-Johnson, M. & McElwain, N. L., 2021, In: ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings. 2021-June, p. 7178-7182 5 p.

  Research output: Contribution to journal › Conference article › peer-review

• A Complete Semantics of K and Its Translation to Isabelle

  Li, L. & Gunter, E. L., 2021, Theoretical Aspects of Computing – ICTAC 2021 - 18th International Colloquium, Proceedings. Cerone, A. & Olveczky, P. C. (eds.). Springer, p. 152-171 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12819 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A complex network framework for the efficiency and resilience trade-off in global food trade

  Karakoc, D. B. & Konar, M., Oct 2021, In: Environmental Research Letters. 16, 10, 105003.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A comprehensive modeling framework to evaluate soil erosion by water and tillage

  Lee, S., Chu, M. L., Guzman, J. A. & Botero-Acosta, A., Feb 1 2021, In: Journal of Environmental Management. 279, 111631.

  Research output: Contribution to journal › Article › peer-review

• A comprehensive review of educational articles on structural and multidisciplinary optimization

  Wang, C., Zhao, Z., Zhou, M., Sigmund, O. & Zhang, X. S., Nov 2021, In: Structural and Multidisciplinary Optimization. 64, 5, p. 2827-2880 54 p.

  Research output: Contribution to journal › Review article › peer-review

• A comprehensive survey of inverse uncertainty quantification of physical model parameters in nuclear system thermal–hydraulics codes

  Wu, X., Xie, Z., Alsafadi, F. & Kozlowski, T., Dec 1 2021, In: Nuclear Engineering and Design. 384, 111460.

  Research output: Contribution to journal › Review article › peer-review

• A comprehensive uncertainty quantification of large-scale process-based crop modeling frameworks

  Dokoohaki, H., Kivi, M. S., Martinez-Feria, R., Miguez, F. E. & Hoogenboom, G., Aug 2021, In: Environmental Research Letters. 16, 8, 084010.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A Concurrent Entity Component System for Geographical Wildlife Epidemiological Modeling

  Davis, A. V. & Wang, S., Oct 2021, In: Geographical Analysis. 53, 4, p. 836-868 33 p.

  Research output: Contribution to journal › Article › peer-review