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• 2010

  A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome

  Menschaert, G., Vandekerckhove, T. T. M., Baggerman, G., Landuyt, B., Sweedler, J. V., Schoofs, L., Luyten, W. & Van Criekinge, W., Feb 5 2010, In: Journal of Proteome Research. 9, 2, p. 990-996 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Sea Urchins
  • Genes
  • Genome
  • Databases
  • High performance liquid chromatography

• A mass spectrometry primer for mass spectrometry imaging

  Rubakhin, S. S. & Sweedler, J. V., 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 21-49 29 p. (Methods in Molecular Biology; vol. 656).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Tandem Mass Spectrometry
  • Mass Spectrometry
  • Molecular Biology
  • Research Personnel
  • Technology

• Base-induced delignification of miscanthus x giganteus studied by three-dimensional confocal raman imaging

  Chu, L. Q., Masyuko, R., Sweedler, J. V. & Bohn, P. W., Jul 1 2010, In: Bioresource Technology. 101, 13, p. 4919-4925 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Lignin
  • Delignification
  • Cells
  • Cellulose
  • Imaging techniques

• Circadian integration of glutamatergic signals by little SAAS in novel suprachiasmatic circuits

  Atkins, N., Mitchell, J. W., Romanova, E. V., Morgan, D. J., Cominski, T. P., Ecker, J. L., Pintar, J. E., Sweedler, J. V. & Gillette, M. U., 2010, In: PloS one. 5, 9, p. 1-13 13 p., e12612.

  Research output: Contribution to journal › Article › peer-review

  • Suprachiasmatic Nucleus
  • Gastrin-Releasing Peptide
  • Light
  • Vasoactive Intestinal Peptide
  • Networks (circuits)

• Comparison of sample pre-treatments for laser desorption ionization and secondary ion mass spectrometry imaging of Miscanthus × giganteus

  Li, Z., Bohn, P. W. & Sweedler, J. V., Jul 2010, In: Bioresource Technology. 101, 14, p. 5578-5585 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Secondary ion mass spectrometry
  • Ionization
  • Mass spectrometry
  • Desorption
  • ionization

• Composite modulatory feedforward loop contributes to the establishment of a network state

  Wu, J. S., Vilim, F. S., Hatcher, N. G., Due, M. R., Sweedler, J. V., Weiss, K. R. & Jing, J., Apr 2010, In: Journal of neurophysiology. 103, 4, p. 2174-2184 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Interneurons
  • Central Pattern Generators
  • Aplysia
  • Peptides
  • Cheek

• Direct cellular peptidomics of supraoptic magnocellular and hippocampal neurons in low-density cocultures

  Millet, L. J., Bora, A., Sweedler, J. V. & Gillette, M. U., Jan 20 2010, In: ACS Chemical Neuroscience. 1, 1, p. 36-48 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Coculture Techniques
  • Neurons
  • Peptides
  • Neuroglia
  • Cell signaling

• Distinct mechanisms produce functionally complementary actions of neuropeptides that are structurally related but derived from different precursors

  Vilim, F. S., Sasaki, K., Rybak, J., Alexeeva, V., Cropper, E. C., Jing, J., Orekhova, I. V., Brezina, V., Price, D., Romanova, E. V., Rubakhin, S. S., Hatcher, N., Sweedler, J. V. & Weiss, K. R., Jan 6 2010, In: Journal of Neuroscience. 30, 1, p. 131-147 17 p.

  Research output: Contribution to journal › Article › peer-review

  • FMRFamide
  • Neuropeptides
  • arginylphenylalaninamide
  • FMRFamide precursor
  • Sensory Receptor Cells

• Electrokinetic control of fluid transport in gold-coated nanocapillary array membranes in hybrid nanofluidic-microfluidic devices

  Piruska, A., Branagan, S. P., Minnis, A. B., Wang, Z., Cropek, D. M., Sweedler, J. V. & Bohn, P. W., 2010, In: Lab on a chip. 10, 10, p. 1237-1244 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanofluidics
  • Lab-On-A-Chip Devices
  • Neural Cell Adhesion Molecules
  • Gold
  • Microfluidics

• Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry

  Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. U., Sweedler, J. V. & Kelleher, N. L., Feb 2010, In: Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass spectrometry
  • Suprachiasmatic Nucleus
  • Circadian Clocks
  • Rats
  • Tandem Mass Spectrometry

• Feedforward compensation mediated by the central and peripheral actions of a single neuropeptide discovered using representational difference analysis

  Jing, J., Sweedler, J. V., Cropper, E. C., Alexeeva, V., Park, J. H., Romanova, E. V., Xie, F., Dembrow, N. C., Ludwar, B. C., Weiss, K. R. & Vilim, F. S., Dec 8 2010, In: Journal of Neuroscience. 30, 49, p. 16545-16558 14 p.

  Research output: Contribution to journal › Article › peer-review

  • allatotropin
  • Neuropeptides
  • Interneurons
  • Cheek
  • Peptides

• Fishing for the hidden peptidome in health and disease (Drug Abuse)

  Fricker, L. D. & Sweedler, J. V., Dec 2010, In: AAPS Journal. 12, 4, p. 679-682 4 p.

  Research output: Contribution to journal › Review article › peer-review

  • Substance-Related Disorders
  • Health
  • Proteins
  • Peptides
  • Peptide Receptors

• Genome-wide analyses reveal a role for peptide hormones in planarian germline development

  Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A., Oct 2010, In: PLoS biology. 8, 10, e1000509.

  Research output: Contribution to journal › Article › peer-review

  • Planarians
  • Platyhelminths
  • peptide hormones
  • Peptide Hormones
  • Platyhelminthes

• Genome-wide census and expression profiling of chicken neuropeptide and prohormone convertase genes

  Delfino, K. R., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Feb 2010, In: Neuropeptides. 44, 1, p. 31-44 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Proprotein Convertases
  • Censuses
  • Neuropeptides
  • Chickens
  • Genome

• Mass spectrometry–based methodologies for single-cell metabolite detection and identification

  Knolhoff, A. M., Nemes, P., Rubakhin, S. & Sweedler, J. V., Jan 1 2010, Methodologies for Metabolomics: Experimental Strategies and Techniques. Cambridge University Press, p. 119-139 21 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Metabolomics
  • Metabolites
  • Fluorescence
  • Neuroglia
  • Tissue

• Mass Spectrometry Imaging: Principles and Protocols

  Rubakhin, S. (ed.) & Sweedler, J. V. (ed.), 2010, Humana Press. 488 p. (Methods in Molecular Biology; vol. 656)

  Research output: Book/Report/Conference proceeding › Book

  • Mass Spectrometry
  • Xenobiotics
  • Industry
  • Molecular Biology
  • Technology

• Mass spectrometry imaging using the stretched sample approach

  Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 465-479 15 p. (Methods in Molecular Biology; vol. 656).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Mass Spectrometry
  • Membranes
  • Lasers
  • Computer-Assisted Image Processing
  • Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry

• Mass spectrometry screening reveals peptides modulated differentially in the medial prefrontal cortex of rats with disparate initial sensitivity to cocaine

  Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Sep 2010, In: AAPS Journal. 12, 3, p. 443-454 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass Screening
  • Cocaine
  • Prefrontal Cortex
  • Mass Spectrometry
  • Peptides

• Methodologies for metabolomics: Experimental strategies and techniques

  Lutz, N. W., Sweedler, J. V. & Wevers, R. A., Jan 1 2010, Cambridge University Press. 627 p.

  Research output: Book/Report/Conference proceeding › Book

  • Metabolomics
  • Metabolites
  • Metabolic Networks and Pathways
  • Mass spectrometry
  • Metabolism

• Nanofluidics in chemical analysis

  Piruska, A., Gong, M., Sweedler, J. V. & Bohn, P. W., Feb 24 2010, In: Chemical Society Reviews. 39, 3, p. 1060-1072 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanofluidics
  • Nanopores
  • Chemical analysis
  • Microfluidics
  • Microsensors

• Neuropeptide release is impaired in a mouse model of fragile x mental retardation syndrome

  Annangudi, S. P., Luszpak, A. E., Kim, S. H., Ren, S., Hatcher, N. G., Weiler, I. J., Thornley, K. T., Kile, B. M., Wightman, R. M., Greenough, W. T. & Sweedler, J. V., Apr 21 2010, In: ACS Chemical Neuroscience. 1, 4, p. 306-314 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Fragile X Mental Retardation Protein
  • Neuropeptides
  • Intellectual Disability
  • Fragile X Syndrome
  • Biogenic Amines

• Preface

  Rubakhin, S. & Sweedler, J. V., Dec 1 2010, In: Methods in Molecular Biology. 656

  Research output: Contribution to journal › Article › peer-review

• Production of nitric oxide within the aplysia californica nervous system

  Ye, X., Xie, F., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Mar 17 2010, In: ACS Chemical Neuroscience. 1, 3, p. 182-193 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Aplysia
  • Neurology
  • Fluorescence
  • Nervous System
  • Nitric Oxide

• Quantitative neuroproteomics of the synapse.

  Ramos-Ortolaza, D. L., Bushlin, I., Abul-Husn, N., Annangudi, S. P., Sweedler, J. & Devi, L. A., 2010, In: Methods in molecular biology (Clifton, N.J.). 615, p. 227-246 20 p.

  Research output: Contribution to journal › Article › peer-review

  • Proteomics
  • Synapses
  • Neurodegenerative Diseases
  • Proteins
  • Brain

• Serotonin and its metabolism in basal deuterostomes: Insights from Strongylocentrotus purpuratus and Xenoturbella bocki

  Squires, L. N., Rubakhin, S. S., Wadhams, A. A., Talbot, K. N., Nakano, H., Moroz, L. L. & Sweedler, J. V., Aug 1 2010, In: Journal of Experimental Biology. 213, 15, p. 2647-2654 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Strongylocentrotus purpuratus
  • basal metabolism
  • Basal Metabolism
  • acetic acid
  • serotonin

• Single-Cell Mass Spectrometry

  Knolhoff, A. M., Rubakhin, S. & Sweedler, J. V., Mar 19 2010, Chemical Cytometry: Ultrasensitive Analysis of Single Cells. Wiley-VCH, p. 197-218 22 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Spatial correlation of confocal raman scattering and secondary ion mass spectrometric molecular images of lignocellulosic materials

  Li, Z., Chu, L. Q., Sweedler, J. V. & Bohn, P. W., Apr 1 2010, In: Analytical chemistry. 82, 7, p. 2608-2611 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Molecular mass
  • Secondary ion mass spectrometry
  • Raman scattering
  • Ions
  • hemicellulose

• Synthesis, accumulation, and release of d-aspartate in the Aplysia californica CNS

  Scanlan, C., Shi, T., Hatcher, N. G., Rubakhin, S. S. & Sweedler, J. V., Dec 2010, In: Journal of Neurochemistry. 115, 5, p. 1234-1244 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Aplysia
  • Aspartic Acid
  • Ganglia
  • Neurons
  • Tissue

• The genome of a songbird

  Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M., Balakrishnan, C. N. & 62 others, Sinha, S., Blatti, C., London, S. E., Li, Y., Lin, Y. C., George, J., Sweedler, J., Southey, B., Gunaratne, P., Watson, M., Nam, K., Backström, N., Smeds, L., Nabholz, B., Itoh, Y., Whitney, O., Pfenning, A. R., Howard, J., Völker, M., Skinner, B. M., Griffin, D. K., Ye, L., McLaren, W. M., Flicek, P., Quesada, V., Velasco, G., Lopez-Otin, C., Puente, X. S., Olender, T., Lancet, D., Smit, A. F. A., Hubley, R., Konkel, M. K., Walker, J. A., Batzer, M. A., Gu, W., Pollock, D. D., Chen, L., Cheng, Z., Eichler, E. E., Stapley, J., Slate, J., Ekblom, R., Birkhead, T., Burke, T., Burt, D., Scharff, C., Adam, I., Richard, H., Sultan, M., Soldatov, A., Lehrach, H., Edwards, S. V., Yang, S. P., Li, X., Graves, T., Fulton, L., Nelson, J., Chinwalla, A., Hou, S., Mardis, E. R. & Wilson, R. K., Apr 1 2010, In: Nature. 464, 7289, p. 757-762 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Finches
  • Songbirds
  • Equidae
  • Genome
  • Molecular Evolution

• The zebra finch neuropeptidome: Prediction, detection and expression

  Xie, F., London, S. E., Southey, B. R., Annangudi, S. P., Amare, A., Rodriguez-Zas, S. L., Clayton, D. F. & Sweedler, J. V., Apr 1 2010, In: BMC biology. 8, 28.

  Research output: Contribution to journal › Article › peer-review

  • Finches
  • Taeniopygia guttata
  • Equidae
  • peptide
  • Mass spectrometry

• Transcriptional Orchestration of the Regulated Secretory Pathway in Neurons by the bHLH protein DIMM

  Hamanaka, Y., Park, D., Yin, P., Annangudi, S. P., Edwards, T. N., Sweedler, J., Meinertzhagen, I. A. & Taghert, P. H., Jan 12 2010, In: Current Biology. 20, 1, p. 9-18 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Secretory Pathway
  • neuropeptides
  • Neuropeptides
  • Neurons
  • neurons
• 2013

  Are we virtual yet?

  Sweedler, J. V., Apr 2 2013, In: Analytical chemistry. 85, 7, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Automated method for analysis of tryptophan and tyrosine metabolites using capillary electrophoresis with native fluorescence detection

  Dailey, C. A., Garnier, N., Rubakhin, S. S. & Sweedler, J. V., Mar 2013, In: Analytical and bioanalytical chemistry. 405, 8, p. 2451-2459 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Capillary electrophoresis
  • Metabolites
  • Capillary Electrophoresis
  • Fluorescence
  • Tryptophan

• Buyer beware! Think twice when selecting a journal (or attending a conference)

  Sweedler, J. V., Nov 5 2013, In: Analytical chemistry. 85, 21, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Celebrating the 75th anniversary of the ACS division of analytical chemistry: A special collection of the most highly cited analytical chemistry papers published between 1938 and 2012

  Larive, C. K. & Sweedler, J. V., May 7 2013, In: Analytical chemistry. 85, 9, p. 4201-4202 2 p.

  Research output: Contribution to journal › Editorial › peer-review

• Characterization of GdFFD, a D-amino acid-containing neuropeptide that functions as an extrinsic modulator of the Aplysia feeding circuit

  Bai, L., Livnat, I., Romanova, E. V., Alexeeva, V., Yau, P. M., Vilim, F. S., Weiss, K. R., Jing, J. & Sweedler, J. V., Nov 15 2013, In: Journal of Biological Chemistry. 288, 46, p. 32837-32851 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Aplysia
  • Neuropeptides
  • Modulators
  • Amino Acids
  • Peptides

• Combining small-volume metabolomic and transcriptomic approaches for assessing brain chemistry

  Knolhoff, A. M., Nautiyal, K. M., Nemes, P., Kalachikov, S., Morozova, I., Silver, R. & Sweedler, J. V., Mar 19 2013, In: Analytical Chemistry. 85, 6, p. 3136-3143 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Metabolomics
  • Metabolites
  • Capillary electrophoresis
  • Mass spectrometry
  • Brain

• Correlated imaging-a grand challenge in chemical analysis

  Masyuko, R., Lanni, E. J., Sweedler, J. V. & Bohn, P. W., Apr 7 2013, In: Analyst. 138, 7, p. 1924-1939 16 p.

  Research output: Contribution to journal › Review article › peer-review

  • chemical analysis
  • Imaging techniques
  • Chemical analysis
  • chemical
  • experiment

• Details matter, and so do statistics

  Sweedler, J. V., Jun 4 2013, In: Analytical chemistry. 85, 11, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Discovery of new enzymes and metabolic pathways by using structure and genome context

  Zhao, S., Kumar, R., Sakai, A., Vetting, M. W., Wood, B. M. K., Brown, S., Bonanno, J. B., Hillerich, B. S., Seidel, R. D., Babbitt, P. C., Almo, S. C., Sweedler, J. V., Gerlt, J. A., Cronan, J. E. & Jacobson, M. P., 2013, In: Nature. 502, 7473, p. 698-702 5 p.

  Research output: Contribution to journal › Article › peer-review

  • stachydrine
  • Metabolic Networks and Pathways
  • Substrate Specificity
  • Multigene Family
  • Genome

• Laminar stream of detergents for subcellular neurite damage in a microfluidic device: A simple tool for the study of neuroregeneration

  Lee, C. Y., Romanova, E. V. & Sweedler, J. V., Jun 2013, In: Journal of Neural Engineering. 10, 3, 036020.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Detergents
  • Neurites
  • Microfluidics
  • Neurons

• Meet our second advisory board, the analytical chemistry features panel

  Sweedler, J. V., Aug 20 2013, In: Analytical chemistry. 85, 16, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Meet the Analytical Chemistry editorial advisory board

  Sweedler, J. V., Feb 5 2013, In: Analytical chemistry. 85, 3, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Microfluidic systems for studying neurotransmitters and neurotransmission

  Croushore, C. A. & Sweedler, J. V., May 7 2013, In: Lab on a chip. 13, 9, p. 1666-1676 11 p.

  Research output: Contribution to journal › Review article › peer-review

  • Microfluidics
  • Molecules
  • Synaptic Transmission
  • Neurotransmitter Agents
  • Cell signaling

• Multifactorial understanding of ion abundance in tandem mass spectrometry experiments

  Fazal, Z., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., 2013, In: Journal of Proteomics and Bioinformatics. 6, 2, p. 23-29 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Mass spectrometry
  • Tandem Mass Spectrometry
  • Ions
  • Peptides
  • Experiments

• New Mass Spectrometric Approaches for Uncovering Neuropeptides

  Hou, X. & Sweedler, J. V., Aug 29 2013, Handbook of Biologically Active Peptides. Elsevier Inc., p. 1749-1756 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Pittcon: Still vibrant after more than 60 years

  Sweedler, J. V., Mar 5 2013, In: Analytical chemistry. 85, 5, 1 p.

  Research output: Contribution to journal › Editorial › peer-review

• Progress toward single cell metabolomics

  Rubakhin, S. S., Lanni, E. J. & Sweedler, J. V., Feb 2013, In: Current Opinion in Biotechnology. 24, 1, p. 95-104 10 p.

  Research output: Contribution to journal › Review article › peer-review

  • Metabolomics
  • Metabolites
  • Molecules
  • Mass spectrometry
  • Microfluidics

• Qualitative and quantitative metabolomic investigation of single neurons by capillary electrophoresis electrospray ionization mass spectrometry

  Nemes, P., Rubakhin, S. S., Aerts, J. T. & Sweedler, J. V., Apr 2013, In: Nature Protocols. 8, 4, p. 783-799 17 p.

  Research output: Contribution to journal › Article › peer-review

  • Electrospray ionization
  • Capillary electrophoresis
  • Metabolomics
  • Electrospray Ionization Mass Spectrometry
  • Capillary Electrophoresis

• Quantitation of endogenous peptides using mass spectrometry based methods

  Romanova, E. V., Dowd, S. E. & Sweedler, J. V., Oct 2013, In: Current Opinion in Chemical Biology. 17, 5, p. 801-808 8 p.

  Research output: Contribution to journal › Review article › peer-review

  • Mass spectrometry
  • Mass Spectrometry
  • Peptides
  • Molecular interactions
  • Industrial Development