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2010
A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome
Menschaert, G., Vandekerckhove, T. T. M., Baggerman, G., Landuyt, B., Sweedler, J. V., Schoofs, L., Luyten, W. & Van Criekinge, W., Feb 5 2010, In: Journal of Proteome Research. 9, 2, p. 990-996 7 p.Research output: Contribution to journal › Article › peer-review
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A mass spectrometry primer for mass spectrometry imaging
Rubakhin, S. S. & Sweedler, J. V., 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 21-49 29 p. (Methods in Molecular Biology; vol. 656).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Base-induced delignification of miscanthus x giganteus studied by three-dimensional confocal raman imaging
Chu, L. Q., Masyuko, R., Sweedler, J. V. & Bohn, P. W., Jul 1 2010, In: Bioresource Technology. 101, 13, p. 4919-4925 7 p.Research output: Contribution to journal › Article › peer-review
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Circadian integration of glutamatergic signals by little SAAS in novel suprachiasmatic circuits
Atkins, N., Mitchell, J. W., Romanova, E. V., Morgan, D. J., Cominski, T. P., Ecker, J. L., Pintar, J. E., Sweedler, J. V. & Gillette, M. U., 2010, In: PloS one. 5, 9, p. 1-13 13 p., e12612.Research output: Contribution to journal › Article › peer-review
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Comparison of sample pre-treatments for laser desorption ionization and secondary ion mass spectrometry imaging of Miscanthus × giganteus
Li, Z., Bohn, P. W. & Sweedler, J. V., Jul 1 2010, In: Bioresource Technology. 101, 14, p. 5578-5585 8 p.Research output: Contribution to journal › Article › peer-review
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Composite modulatory feedforward loop contributes to the establishment of a network state
Wu, J. S., Vilim, F. S., Hatcher, N. G., Due, M. R., Sweedler, J. V., Weiss, K. R. & Jing, J., Apr 2010, In: Journal of neurophysiology. 103, 4, p. 2174-2184 11 p.Research output: Contribution to journal › Article › peer-review
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Direct cellular peptidomics of supraoptic magnocellular and hippocampal neurons in low-density cocultures
Millet, L. J., Bora, A., Sweedler, J. V. & Gillette, M. U., Jan 20 2010, In: ACS Chemical Neuroscience. 1, 1, p. 36-48 13 p.Research output: Contribution to journal › Article › peer-review
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Distinct mechanisms produce functionally complementary actions of neuropeptides that are structurally related but derived from different precursors
Vilim, F. S., Sasaki, K., Rybak, J., Alexeeva, V., Cropper, E. C., Jing, J., Orekhova, I. V., Brezina, V., Price, D., Romanova, E. V., Rubakhin, S. S., Hatcher, N., Sweedler, J. V. & Weiss, K. R., Jan 6 2010, In: Journal of Neuroscience. 30, 1, p. 131-147 17 p.Research output: Contribution to journal › Article › peer-review
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Electrokinetic control of fluid transport in gold-coated nanocapillary array membranes in hybrid nanofluidic-microfluidic devices
Piruska, A., Branagan, S. P., Minnis, A. B., Wang, Z., Cropek, D. M., Sweedler, J. V. & Bohn, P. W., 2010, In: Lab on a chip. 10, 10, p. 1237-1244 8 p.Research output: Contribution to journal › Article › peer-review
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Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry
Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. U., Sweedler, J. V. & Kelleher, N. L., Feb 2010, In: Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.Research output: Contribution to journal › Article › peer-review
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Feedforward compensation mediated by the central and peripheral actions of a single neuropeptide discovered using representational difference analysis
Jing, J., Sweedler, J. V., Cropper, E. C., Alexeeva, V., Park, J. H., Romanova, E. V., Xie, F., Dembrow, N. C., Ludwar, B. C., Weiss, K. R. & Vilim, F. S., Dec 8 2010, In: Journal of Neuroscience. 30, 49, p. 16545-16558 14 p.Research output: Contribution to journal › Article › peer-review
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Fishing for the hidden peptidome in health and disease (Drug Abuse)
Fricker, L. D. & Sweedler, J. V., Dec 2010, In: AAPS Journal. 12, 4, p. 679-682 4 p.Research output: Contribution to journal › Review article › peer-review
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Genome-wide analyses reveal a role for peptide hormones in planarian germline development
Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A., Oct 2010, In: PLoS biology. 8, 10, e1000509.Research output: Contribution to journal › Article › peer-review
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Genome-wide census and expression profiling of chicken neuropeptide and prohormone convertase genes
Delfino, K. R., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Feb 2010, In: Neuropeptides. 44, 1, p. 31-44 14 p.Research output: Contribution to journal › Article › peer-review
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Mass spectrometry–based methodologies for single-cell metabolite detection and identification
Knolhoff, A. M., Nemes, P., Rubakhin, S. & Sweedler, J. V., Jan 1 2010, Methodologies for Metabolomics: Experimental Strategies and Techniques. Cambridge University Press, p. 119-139 21 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Mass Spectrometry Imaging: Principles and Protocols
Rubakhin, S. (ed.) & Sweedler, J. V. (ed.), 2010, Humana Press. 488 p. (Methods in Molecular Biology; vol. 656)Research output: Book/Report/Conference proceeding › Book
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Mass spectrometry imaging using the stretched sample approach
Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 465-479 15 p. (Methods in Molecular Biology; vol. 656).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Mass spectrometry screening reveals peptides modulated differentially in the medial prefrontal cortex of rats with disparate initial sensitivity to cocaine
Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Sep 2010, In: AAPS Journal. 12, 3, p. 443-454 12 p.Research output: Contribution to journal › Article › peer-review
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Methodologies for metabolomics: Experimental strategies and techniques
Lutz, N. W., Sweedler, J. V. & Wevers, R. A., Jan 1 2010, Cambridge University Press. 627 p.Research output: Book/Report/Conference proceeding › Book
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Nanofluidics in chemical analysis
Piruska, A., Gong, M., Sweedler, J. V. & Bohn, P. W., Feb 24 2010, In: Chemical Society Reviews. 39, 3, p. 1060-1072 13 p.Research output: Contribution to journal › Article › peer-review
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Neuropeptide release is impaired in a mouse model of fragile x mental retardation syndrome
Annangudi, S. P., Luszpak, A. E., Kim, S. H., Ren, S., Hatcher, N. G., Weiler, I. J., Thornley, K. T., Kile, B. M., Wightman, R. M., Greenough, W. T. & Sweedler, J. V., Apr 21 2010, In: ACS Chemical Neuroscience. 1, 4, p. 306-314 9 p.Research output: Contribution to journal › Article › peer-review
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Preface
Rubakhin, S. & Sweedler, J. V., Dec 1 2010, In: Methods in Molecular Biology. 656Research output: Contribution to journal › Article › peer-review
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Production of nitric oxide within the aplysia californica nervous system
Ye, X., Xie, F., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Mar 17 2010, In: ACS Chemical Neuroscience. 1, 3, p. 182-193 12 p.Research output: Contribution to journal › Article › peer-review
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Quantitative neuroproteomics of the synapse.
Ramos-Ortolaza, D. L., Bushlin, I., Abul-Husn, N., Annangudi, S. P., Sweedler, J. & Devi, L. A., 2010, In: Methods in molecular biology (Clifton, N.J.). 615, p. 227-246 20 p.Research output: Contribution to journal › Article › peer-review
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Serotonin and its metabolism in basal deuterostomes: Insights from Strongylocentrotus purpuratus and Xenoturbella bocki
Squires, L. N., Rubakhin, S. S., Wadhams, A. A., Talbot, K. N., Nakano, H., Moroz, L. L. & Sweedler, J. V., Aug 1 2010, In: Journal of Experimental Biology. 213, 15, p. 2647-2654 8 p.Research output: Contribution to journal › Article › peer-review
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Single-Cell Mass Spectrometry
Knolhoff, A. M., Rubakhin, S. & Sweedler, J. V., Mar 19 2010, Chemical Cytometry: Ultrasensitive Analysis of Single Cells. Wiley-VCH, p. 197-218 22 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Spatial correlation of confocal raman scattering and secondary ion mass spectrometric molecular images of lignocellulosic materials
Li, Z., Chu, L. Q., Sweedler, J. V. & Bohn, P. W., Apr 1 2010, In: Analytical chemistry. 82, 7, p. 2608-2611 4 p.Research output: Contribution to journal › Article › peer-review
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Synthesis, accumulation, and release of d-aspartate in the Aplysia californica CNS
Scanlan, C., Shi, T., Hatcher, N. G., Rubakhin, S. S. & Sweedler, J. V., Dec 2010, In: Journal of Neurochemistry. 115, 5, p. 1234-1244 11 p.Research output: Contribution to journal › Article › peer-review
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The genome of a songbird
Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M., Balakrishnan, C. N. & 62 others, , Apr 1 2010, In: Nature. 464, 7289, p. 757-762 6 p.Research output: Contribution to journal › Article › peer-review
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The zebra finch neuropeptidome: Prediction, detection and expression
Xie, F., London, S. E., Southey, B. R., Annangudi, S. P., Amare, A., Rodriguez-Zas, S. L., Clayton, D. F. & Sweedler, J. V., Apr 1 2010, In: BMC biology. 8, 28.Research output: Contribution to journal › Article › peer-review
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Transcriptional Orchestration of the Regulated Secretory Pathway in Neurons by the bHLH protein DIMM
Hamanaka, Y., Park, D., Yin, P., Annangudi, S. P., Edwards, T. N., Sweedler, J., Meinertzhagen, I. A. & Taghert, P. H., Jan 12 2010, In: Current Biology. 20, 1, p. 9-18 10 p.Research output: Contribution to journal › Article › peer-review
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2012
1-methylthio-d-xylulose 5-phosphate methylsulfurylase: A novel route to 1-deoxy-d-xylulose 5-phosphate in Rhodospirillum rubrum
Warlick, B. P., Evans, B. S., Erb, T. J., Ramagopal, U. A., Sriram, J., Imker, H. J., Sauder, J. M., Bonanno, J. B., Burley, S. K., Tabita, F. R., Almo, S. C., Sweedler, J. S. & Gerlt, J. A., Oct 23 2012, In: Biochemistry. 51, 42, p. 8324-8326 3 p.Research output: Contribution to journal › Article › peer-review
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A hyphenated optical trap capillary electrophoresis laser induced native fluorescence system for single-cell chemical analysis
Cecala, C., Rubakhin, S. S., Mitchell, J. W., Gillette, M. U. & Sweedler, J. V., Jul 7 2012, In: Analyst. 137, 13, p. 2965-2972 8 p.Research output: Contribution to journal › Review article › peer-review
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Analyses of pig genomes provide insight into porcine demography and evolution
Groenen, M. A. M., Archibald, A. L., Uenishi, H., Tuggle, C. K., Takeuchi, Y., Rothschild, M. F., Rogel-Gaillard, C., Park, C., Milan, D., Megens, H. J., Li, S., Larkin, D. M., Kim, H., Frantz, L. A. F., Caccamo, M., Ahn, H., Aken, B. L., Anselmo, A., Anthon, C., Auvil, L. & 116 others, , Nov 15 2012, In: Nature. 491, 7424, p. 393-398 6 p.Research output: Contribution to journal › Article › peer-review
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Analytical chemistry: The synergies between the division and the journal
Sweedler, J. V. & Koppenaal, D. W., Nov 6 2012, In: Analytical chemistry. 84, 21, 1 p.Research output: Contribution to journal › Editorial › peer-review
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An enhanced protein crosslink identification strategy using CID-cleavable chemical crosslinkers and LC/MS n analysis
Liu, F., Wu, C., Sweedler, J. V. & Goshe, M. B., Feb 2012, In: Proteomics. 12, 3, p. 401-405 5 p.Research output: Contribution to journal › Comment/debate › peer-review
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A protease for 'middle-down' proteomics
Wu, C., Tran, J. C., Zamdborg, L., Durbin, K. R., Li, M., Ahlf, D. R., Early, B. P., Thomas, P. M., Sweedler, J. V. & Kelleher, N. L., Aug 1 2012, In: Nature Methods. 9, 8, p. 822-824 3 p.Research output: Contribution to journal › Article › peer-review
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Are we growing more picky, more careless or simply under more pressure?
Sweedler, J. V., Aug 7 2012, In: Analytical chemistry. 84, 15, 1 p.Research output: Contribution to journal › Editorial › peer-review
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A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis
Erb, T. J., Evans, B. S., Cho, K., Warlick, B. P., Sriram, J., Wood, B. M. K., Imker, H. J., Sweedler, J. V., Tabita, F. R. & Gerlt, J. A., Nov 2012, In: Nature chemical biology. 8, 11, p. 926-932 7 p.Research output: Contribution to journal › Article › peer-review
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Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons
Wang, T. A., Yu, Y. V., Govindaiah, G., Ye, X., Artinian, L., Coleman, T. P., Sweedler, J. V., Cox, C. L. & Gillette, M. U., Aug 17 2012, In: Science. 337, 6096, p. 839-842 4 p.Research output: Contribution to journal › Article › peer-review
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Collaborators, colleagues, and friends need not be listed
Sweedler, J. V., May 1 2012, In: Analytical chemistry. 84, 9, 1 p.Research output: Contribution to journal › Editorial › peer-review
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Comparative peptidomics analysis of neural adaptations in rats repeatedly exposed to amphetamine
Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Nov 2012, In: Journal of Neurochemistry. 123, 2, p. 276-287 12 p.Research output: Contribution to journal › Article › peer-review
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D-Aspartate acts as a signaling molecule in nervous and neuroendocrine systems
Ota, N., Shi, T. & Sweedler, J. V., Nov 2012, In: Amino Acids. 43, 5, p. 1873-1886 14 p.Research output: Contribution to journal › Review article › peer-review
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Don't grow your article too long: We do have length guidelines
Sweedler, J. V., Jul 3 2012, In: Analytical chemistry. 84, 13, 1 p.Research output: Contribution to journal › Editorial › peer-review
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Evaluation of database search programs for accurate detection of neuropeptides in tandem mass spectrometry experiments
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 7 2012, In: Journal of Proteome Research. 11, 12, p. 6044-6055 12 p.Research output: Contribution to journal › Article › peer-review
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Filling Royce's shoes
Sweedler, J., Jan 3 2012, In: Analytical chemistry. 84, 1, 1 p.Research output: Contribution to journal › Editorial › peer-review
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First survey and functional annotation of prohormone and convertase genes in the pig
Porter, K. I., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Nov 15 2012, In: BMC genomics. 13, 1, 582.Research output: Contribution to journal › Article › peer-review
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Glial D-serine gates NMDA receptors at excitatory synapses in prefrontal cortex
Fossat, P., Turpin, F. R., Sacchi, S., Dulong, J., Shi, T., Rivet, J. M., Sweedler, J. V., Pollegioni, L., Millan, M. J., Oliet, S. H. R. & Mothet, J. P., Mar 2012, In: Cerebral Cortex. 22, 3, p. 595-606 12 p.Research output: Contribution to journal › Article › peer-review
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Label-free quantitation of peptide release from neurons in a microfluidic device with mass spectrometry imaging
Zhong, M., Lee, C. Y., Croushore, C. A. & Sweedler, J. V., May 8 2012, In: Lab on a chip. 12, 11, p. 2037-2045 9 p.Research output: Contribution to journal › Article › peer-review
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Let's get social
Sweedler, J. V., Apr 3 2012, In: Analytical chemistry. 84, 7, 1 p.Research output: Contribution to journal › Editorial › peer-review