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Author

  • Joseph Maria Kumar Irudayaraj
2013

New approaches in microbial pathogen detection

Kahyaoglu, L. N. & Irudayaraj, J., Jul 1 2013, Advances in Microbial Food Safety. Elsevier Ltd, Vol. 1. p. 202-226 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

One-stop genomic DNA extraction by salicylic acid-coated magnetic nanoparticles

Zhou, Z., Kadam, U. S. & Irudayaraj, J., 2013, In : Analytical Biochemistry. 442, 2, p. 249-252 4 p.

Research output: Contribution to journalArticle

Pattern recognition applied to spectroscopy: Conventional methods and future directions

Craig, A. P., Franca, A. S. & Irudayaraj, J., Mar 1 2013, Pattern Recognition: Practices, Perspectives and Challenges. Nova Science Publishers, Inc., p. 1-45 45 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Probing site-exclusive binding of aqueous QDs and their organelle-dependent dynamics in live cells by single molecule spectroscopy

Dong, C., Chowdhury, B. & Irudayaraj, J., May 21 2013, In : Analyst. 138, 10, p. 2871-2876 6 p.

Research output: Contribution to journalArticle

Real-time dynamics of methyl-CpG-binding domain protein 3 and its role in DNA demethylation by fluorescence correlation spectroscopy

Cui, Y., Cho, I. H., Chowdhury, B. & Irudayaraj, J., Oct 2013, In : Epigenetics. 8, 10, p. 1089-1100 12 p.

Research output: Contribution to journalArticle

Second harmonic generation correlation spectroscopy for single molecule experiments

Liu, J. & Irudayaraj, J., Nov 4 2013, In : Optics Express. 21, 22, p. 27063-27073 11 p.

Research output: Contribution to journalArticle

Surface-enhanced Raman spectroscopy applied to food safety

Craig, A. P., Franca, A. S. & Irudayaraj, J., Feb 1 2013, In : Annual Review of Food Science and Technology. 4, 1, p. 369-380 12 p.

Research output: Contribution to journalArticle

2014

Application of elastic net and infrared spectroscopy in the discrimination between defective and non-defective roasted coffees

Craig, A. P., Franca, A. S., Oliveira, L. S., Irudayaraj, J. & Ileleji, K., Oct 1 2014, In : Talanta. 128, p. 393-400 8 p.

Research output: Contribution to journalArticle

Diversity of two forms of DNA methylation in the brain

Chen, Y., Damayanti, N. P., Irudayaraj, J., Dunn, K. & Zhou, F. C., 2014, In : Frontiers in Genetics. 5, MAR, Article 46.

Research output: Contribution to journalArticle

Epitaxial superlattices with titanium nitride as a plasmonic component for optical hyperbolic metamaterials

Naik, G. V., Saha, B., Liu, J., Saber, S. M., Stach, E. A., Irudayaraj, J. M. K., Sands, T. D., Shalaev, V. M. & Boltasseva, A., May 27 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 21, p. 7546-7551 6 p.

Research output: Contribution to journalArticle

In-situ fluorescent immunomagnetic multiplex detection of foodborne pathogens in very low numbers

Cho, I. H., Mauer, L. & Irudayaraj, J., Jul 15 2014, In : Biosensors and Bioelectronics. 57, p. 143-148 6 p.

Research output: Contribution to journalArticle

MRNA quantification via second harmonic super resolution microscopy

Liu, J., Cho, I. H., Kadam, U. & Irudayaraj, J., Jan 1 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 89500N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8950).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nano/micro and spectroscopic approaches to food pathogen detection

Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In : Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

Research output: Contribution to journalReview article

NuMA promotes homologous recombination repair by regulating the accumulation of the ISWI ATPase SNF2h at DNA breaks

Vidi, P. A., Liu, J., Salles, D., Jayaraman, S., Dorfman, G., Gray, M., Abad, P., Moghe, P. V., Irudayaraj, J. M., Wiesmüller, L. & Lelièvre, S. A., 2014, In : Nucleic acids research. 42, 10, p. 6365-6379 15 p.

Research output: Contribution to journalArticle

Quantification of 5-methylcytosine, 5-hydroxymethylcytosine and 5-carboxylcytosine from the blood of cancer patients by an enzyme-based immunoassay

Chowdhury, B., Cho, I. H., Hahn, N. & Irudayaraj, J., Dec 10 2014, In : Analytica Chimica Acta. 852, p. 212-217 6 p.

Research output: Contribution to journalArticle

Quantifying local density of optical states of nanorods by fluorescence lifetime imaging

Liu, J., Jiang, X., Ishii, S., Shalaev, V. & Irudayaraj, J., 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 89501E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8950).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Quantifying the local density of optical states of nanorods by fluorescence lifetime imaging

Liu, J., Jiang, X., Ishii, S., Shalaev, V. & Irudayaraj, J., Jun 2014, In : New Journal of Physics. 16, 063069.

Research output: Contribution to journalArticle

Quantitative imaging of single mRNA splice variants in living cells

Lee, K., Cui, Y., Lee, L. P. & Irudayaraj, J., Jun 2014, In : Nature Nanotechnology. 9, 6, p. 474-480 7 p.

Research output: Contribution to journalArticle

Quantitative real-time kinetics of optogenetic proteins CRY2 and CIB1/N using single-molecule tools

Cui, Y., Choudhury, S. R. & Irudayaraj, J., Aug 1 2014, In : Analytical Biochemistry. 458, p. 58-60 3 p.

Research output: Contribution to journalArticle

Raman spectroscopy

Kizil, R. & Irudayaraj, J., 2014, Food Engineering Series. Springer, p. 103-134 32 p. (Food Engineering Series).

Research output: Chapter in Book/Report/Conference proceedingChapter

Second harmonic super-resolution microscopy for quantification of mRNA at single copy sensitivity

Liu, J., Cho, I. H., Cui, Y. & Irudayaraj, J., Dec 23 2014, In : ACS Nano. 8, 12, p. 12418-12427 10 p.

Research output: Contribution to journalArticle

Single-photon source based on NV center in nanodiamond coupled to TiN-based hyperbolic metamaterial

Shalaginov, M. Y., Vorobyov, V. V., Liu, J., Ferrera, M., Akimov, A. V., Lagutchev, A., Smolyaninov, A. N., Klimov, V. V., Irudayaraj, J., Kildishev, A. V., Boltasseva, A. & Shalaev, V. M., Jan 1 2014.

Research output: Contribution to conferencePaper

Targeted in vivo photodynamic therapy with epidermal growth factor receptor-specific peptide linked nanoparticles

Narsireddy, A., Vijayashree, K., Irudayaraj, J., Manorama, S. V. & Rao, N. M., Aug 25 2014, In : International Journal of Pharmaceutics. 471, 1-2, p. 421-429 9 p.

Research output: Contribution to journalArticle

Understanding the mechanical properties of DNA origami tiles and controlling the kinetics of their folding and unfolding reconfiguration

Chen, H., Weng, T. W., Riccitelli, M. M., Cui, Y., Irudayaraj, J. & Choi, J. H., May 14 2014, In : Journal of the American Chemical Society. 136, 19, p. 6995-7005 11 p.

Research output: Contribution to journalArticle

2015

A native chromatin extraction method based on salicylic acid coated magnetic nanoparticles and characterization of chromatin

Zhou, Z. & Irudayaraj, J., Feb 7 2015, In : Analyst. 140, 3, p. 938-944 7 p.

Research output: Contribution to journalArticle

A wireless chemical sensing scheme using ultrasonic imaging of microbubble embeded hydrogel

Park, J. H., Kim, A., Song, S. H., Bhandari, P., Irudayaraj, J. & Ziaie, B., Aug 5 2015, 2015 Transducers - 2015 18th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS 2015. Institute of Electrical and Electronics Engineers Inc., p. 2220-2223 4 p. 7181402. (2015 Transducers - 2015 18th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cross-platform detection of epigenetic modifications from extracted chromatin in leucocytes from blood

Zhou, Z., Cho, II. H., Shan, Z. & Irudayaraj, J., Jun 1 2015, In : Analytical Chemistry Research. 4, p. 39-44 6 p.

Research output: Contribution to journalArticle

Decitabine nanoconjugate sensitizes human glioblastoma cells to temozolomide

Cui, Y., Naz, A., Thompson, D. H. & Irudayaraj, J., Apr 6 2015, In : Molecular pharmaceutics. 12, 4, p. 1279-1288 10 p.

Research output: Contribution to journalArticle

Enhanced multiphoton emission from CdTe/ZnS quantum dots decorated on single-layer graphene

Liu, J., Kumar, P., Hu, Y., Cheng, G. J. & Irudayaraj, J., Mar 19 2015, In : Journal of Physical Chemistry C. 119, 11, p. 6331-6336 6 p.

Research output: Contribution to journalArticle

Enhanced multi-photon emission from single NV center coupled to graphene by laser-shaping

Liu, J., Hu, Y., Kumar, P., Shalaginov, M. Y., Lagutchev, A. S., Shalaev, V. M., Cheng, G. J. & Irudayaraj, J. M. K., May 4 2015, CLEO: QELS - Fundamental Science, CLEO_QELS 2015. Optical Society of America (OSA), p. 1551p (CLEO: QELS - Fundamental Science, CLEO_QELS 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Enhanced multi-photon emission from single NV center coupled to graphene by laser-shaping

Liu, J., Hu, Y., Kumar, P., Shalaginov, M. Y., Lagutchev, A. S., Shalaev, V. M., Cheng, G. J. & Irudayaraj, J. M. K., Aug 10 2015, 2015 Conference on Lasers and Electro-Optics, CLEO 2015. Institute of Electrical and Electronics Engineers Inc., 7183374. (Conference on Lasers and Electro-Optics Europe - Technical Digest; vol. 2015-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Enhancement of single-photon emission from nitrogen-vacancy centers with TiN/(Al,Sc)N hyperbolic metamaterial

Shalaginov, M. Y., Vorobyov, V. V., Liu, J., Ferrera, M., Akimov, A. V., Lagutchev, A., Smolyaninov, A. N., Klimov, V. V., Irudayaraj, J., Kildishev, A. V., Boltasseva, A. & Shalaev, V. M., Jan 1 2015, In : Laser and Photonics Reviews. 9, 1, p. 120-127 8 p.

Research output: Contribution to journalArticle

Fourier transform infrared spectroscopy and near infrared spectroscopy for the quantification of defects in roasted coffees

Craig, A. P., Franca, A. S., Oliveira, L. S., Irudayaraj, J. & Ileleji, K., Mar 1 2015, In : Talanta. 134, p. 379-386 8 p.

Research output: Contribution to journalArticle

Functionalized gold nanoparticles for the detection of nitrates in water

Mura, S., Greppi, G., Roggero, P. P., Musu, E., Pittalis, D., Carletti, A., Ghiglieri, G. & Irudayaraj, J., Jan 1 2015, In : International Journal of Environmental Science and Technology. 12, 3, p. 1021-1028 8 p.

Research output: Contribution to journalArticle

Graphene laminated gold bipyramids as sensitive detection platforms for antibiotic molecules

Lee, S., Kumar, P., Hu, Y., Cheng, G. J. & Irudayaraj, J., 2015, In : Chemical Communications. 51, 85, p. 15494-15497 4 p.

Research output: Contribution to journalArticle

High performance immunochromatographic assay combined with surface enhanced Raman spectroscopy

Cho, I. H., Das, M., Bhandari, P. & Irudayaraj, J., Jul 5 2015, In : Sensors and Actuators, B: Chemical. 213, p. 209-214 6 p.

Research output: Contribution to journalArticle

Inside single cells: Quantitative analysis with advanced optics and nanomaterials

Cui, Y. & Irudayaraj, J., May 1 2015, In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 7, 3, p. 387-407 21 p.

Research output: Contribution to journalReview article

Latest developments of nanotoxicology in plants

Mura, S., Greppi, G. & Irudayaraj, J., Jan 1 2015, Nanotechnology and Plant Sciences: Nanoparticles and Their Impact on Plants. Springer International Publishing, p. 125-151 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Membrane filter-assisted surface enhanced Raman spectroscopy for the rapid detection of E. coli O157: H7 in ground beef

Cho, I. H., Bhandari, P., Patel, P. & Irudayaraj, J., Feb 15 2015, In : Biosensors and Bioelectronics. 64, p. 171-176 6 p.

Research output: Contribution to journalArticle

Modified graphene oxide sensors for ultra-sensitive detection of nitrate ions in water

Ren, W., Mura, S. & Irudayaraj, J. M. K., Jun 14 2015, In : Talanta. 143, p. 234-239 6 p., 15665.

Research output: Contribution to journalArticle

Nanoscale histone localization in live cells reveals reduced chromatin mobility in response to DNA damage

Liu, J., Vidi, P. A., Lelièvre, S. A. & Irudayaraj, J. M. K., 2015, In : Journal of cell science. 128, 3, p. 599-604 6 p.

Research output: Contribution to journalArticle

Rapid and unbiased extraction of chromatin associated RNAs from purified native chromatin

Zhou, Z., Yang, Y., Konieczny, S. F. & Irudayaraj, J. M. K., Dec 24 2015, In : Journal of Chromatography A. 1426, p. 64-68 5 p.

Research output: Contribution to journalArticle

Selective increase in subtelomeric DNA methylation: An epigenetic biomarker for malignant glioma

Choudhury, S. R., Cui, Y., Milton, J. R., Li, J. & Irudayaraj, J., Oct 7 2015, In : Clinical epigenetics. 7, 1, 107.

Research output: Contribution to journalArticle

Single-Cell Quantification of Cytosine Modifications by Hyperspectral Dark-Field Imaging

Wang, X., Cui, Y. & Irudayaraj, J., Oct 27 2015, In : ACS Nano. 9, 12, p. 11924-11932 9 p.

Research output: Contribution to journalArticle

Single-cell screening and quantification of transcripts in cancer tissues by second-harmonic generation microscopy

Liu, J., Damayanti, N. P., Cho, I. H., Polar, Y., Badve, S. & Irudayaraj, J. M. K., Sep 1 2015, In : Journal of biomedical optics. 20, 9, 096016.

Research output: Contribution to journalArticle