Find Research Outputs — University of Illinois at Urbana-Champaign

2015

Classification of Large Cellular Populations and Discovery of Rare Cells Using Single Cell Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry

Ong, T. H., Kissick, D. J., Jansson, E. T., Comi, T. J., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Jul 21 2015, In: Analytical chemistry. 87, 14, p. 7036-7042 7 p.

Research output: Contribution to journal › Article › peer-review

2017

Single Cell Profiling Using Ionic Liquid Matrix-Enhanced Secondary Ion Mass Spectrometry for Neuronal Cell Type Differentiation

Do, T. D., Comi, T. J., Dunham, S. J. B., Rubakhin, S. S. & Sweedler, J. V., Mar 7 2017, In: Analytical Chemistry. 89, 5, p. 3078-3086 9 p.

Research output: Contribution to journal › Article › peer-review

2020

Single-Cell Classification Using Mass Spectrometry through Interpretable Machine Learning

Xie, Y. R., Castro, D. C., Bell, S. E., Rubakhin, S. & Sweedler, J. V., Jul 7 2020, In: Analytical chemistry. 92, 13, p. 9338-9347 10 p.

Research output: Contribution to journal › Article › peer-review

The Addition of Executive Editors: A Change for the Better!

Sweedler, J. V., Pemberton, J. & Zhang, X., May 5 2020, In: Analytical Chemistry. 92, 9, p. 6185-6186 2 p.

Research output: Contribution to journal › Editorial › peer-review

2011

Collection of peptides released from single neurons with particle-embedded monolithic capillaries followed by detection with matrix-assisted laser desorption/ionization mass spectrometry

Fan, Y., Rubakhin, S. & Sweedler, J. V., Dec 15 2011, In: Analytical chemistry. 83, 24, p. 9557-9563 7 p.

Research output: Contribution to journal › Article › peer-review

2015

The Scope of Analytical Chemistry

Sweedler, J. V., Armstrong, D. W., Baba, Y., Desmet, G., Dovichi, N., Ewing, A., Fenselau, C. C., Kennedy, R. T., Larive, C. K., Ligler, F. S., McCreery, R. L., Niessner, R., Pemberton, J. E., Tan, W., Walt, D. R., Yates, J. R., Zenobi, R. & Zhang, X., Jul 7 2015, In: Analytical chemistry. 87, 13, 1 p.

Research output: Contribution to journal › Editorial › peer-review

2016

Career Advice for Graduate Students and Postdoctoral Fellows

Sweedler, J. V., Mar 1 2016, In: Analytical chemistry. 88, 5, p. 2513-2514 2 p.

Research output: Contribution to journal › Editorial › peer-review

2018

Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms between Mouse Strains

Davis, R. G., Park, H. M., Kim, K., Greer, J. B., Fellers, R. T., Leduc, R. D., Romanova, E. V., Rubakhin, S. S., Zombeck, J. A., Wu, C., Yau, P. M., Gao, P., Van Nispen, A. J., Patrie, S. M., Thomas, P. M., Sweedler, J. V., Rhodes, J. S. & Kelleher, N. L., Mar 20 2018, In: Analytical Chemistry. 90, 6, p. 3802-3810 9 p.

Research output: Contribution to journal › Article › peer-review

2017

MALDI MS Guided Liquid Microjunction Extraction for Capillary Electrophoresis-Electrospray Ionization MS Analysis of Single Pancreatic Islet Cells

Comi, T. J., Makurath, M. A., Philip, M. C., Rubakhin, S. S. & Sweedler, J. V., Jul 18 2017, In: Analytical Chemistry. 89, 14, p. 7765-7772 8 p.

Research output: Contribution to journal › Article › peer-review

2018

Who Are Your Coauthors? Make Sure to Follow Appropriate Practices

Sweedler, J. V., Mar 6 2018, In: Analytical Chemistry. 90, 5, p. 2977-2978 2 p.

Research output: Contribution to journal › Editorial › peer-review

2015

Help your institutions reputation and publish in analytical chemistry

Sweedler, J. V., Feb 3 2015, In: Analytical chemistry. 87, 3, 1 p.

Research output: Contribution to journal › Editorial › peer-review

2016

The Analytical Chemistry Advisory Boards

Sweedler, J. V., Aug 2 2016, In: Analytical Chemistry. 88, 15, p. 7435 1 p.

Research output: Contribution to journal › Editorial › peer-review

2017

Metrics to Evaluate Journals, Scientists, and Science: We Are Not There Yet

Sweedler, J. V., Jun 6 2017, In: Analytical Chemistry. 89, 11, p. 5653 1 p.

Research output: Contribution to journal › Editorial › peer-review

2020

Nominate Outstanding Measurement Scientists for the 2020 Analytical Chemistry Young Innovator and the 2021 Advances in Measurement Science Lectureship Awards!

Sweedler, J. V., Mar 3 2020, In: Analytical Chemistry. 92, 5, p. 3493 1 p.

Research output: Contribution to journal › Editorial › peer-review

Open Access

2017

Chiral Measurement of Aspartate and Glutamate in Single Neurons by Large-Volume Sample Stacking Capillary Electrophoresis

Patel, A. V., Kawai, T., Wang, L., Rubakhin, S. S. & Sweedler, J. V., Nov 21 2017, In: Analytical Chemistry. 89, 22, p. 12375-12382 8 p.

Research output: Contribution to journal › Article › peer-review

2016

Our evolving editorial team

Sweedler, J. V., Sep 6 2016, In: Analytical Chemistry. 88, 17, p. 8347 1 p.

Research output: Contribution to journal › Editorial › peer-review

A Universal Identification Number for Authors? Go Ahead, Try It

Sweedler, J. V., May 3 2016, In: Analytical Chemistry. 88, 9, p. 4583 1 p.

Research output: Contribution to journal › Editorial › peer-review

2015

Analytical chemistry is thriving in Thailand

Sweedler, J. V., May 5 2015, In: Analytical chemistry. 87, 9, 1 p.

Research output: Contribution to journal › Editorial › peer-review

2012

Reviews, perspectives, features: What's the difference?

Sweedler, J. V., Feb 7 2012, In: Analytical chemistry. 84, 3, 1 p.

Research output: Contribution to journal › Editorial › peer-review

Metabolomics in analytical chemistry

Sweedler, J. V., Jul 17 2012, In: Analytical chemistry. 84, 14, 1 p.

Research output: Contribution to journal › Editorial › peer-review

2018

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2011

Comparison of tandem mass spectrometry search methods to identify neuropeptides

Akhtar, M. N., Southey, B. R., Porter, K. I., Sweedler, J. V. & Rodriguez-Zas, S. L., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 982-984 3 p. 6112530. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2016

Label-free molecular imaging of bacterial communities of the opportunistic pathogen Pseudomonas aeruginosa

Baig, N., Polisetti, S., Morales-Soto, N., Dunham, S. J. B., Sweedler, J. V., Shrout, J. D. & Bohn, P. W., 2016, Biosensing and Nanomedicine IX. Mohseni, H., Agahi, M. H. & Razeghi, M. (eds.). SPIE, 993004. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9930).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2017

Microscale transport physics during atomic force microscopy mass spectrometry and improved sampling efficiency

Moon, H., Comi, T. J., Dunham, S. J. B., Kwon, B., Sweedler, J. V. & King, W. P., Jul 26 2017, TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems. Institute of Electrical and Electronics Engineers Inc., p. 24-27 4 p. 7993978. (TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2011

Neuropeptidomics of the mammalian brain

Xie, F., Romanova, E. V. & Sweedler, J. V., Jun 3 2011, Neuroproteomics. Li, K. W. (ed.). p. 229-242 14 p. (Neuromethods; vol. 57).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

MALDI mass spectrometry imaging of neuronal cell cultures

Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., May 2011, In: Journal of the American Society for Mass Spectrometry. 22, 5, p. 828-836 9 p.

Research output: Contribution to journal › Article › peer-review

A novel pyridoxal 5'-phosphate-dependent amino acid racemase in the aplysia californica central nervous system

Wang, L., Ota, N., Romanova, E. V. & Sweedler, J. V., Apr 15 2011, In: Journal of Biological Chemistry. 286, 15, p. 13765-13774 10 p.

Research output: Contribution to journal › Article › peer-review

2016

Mass spectrometry imaging and identification of peptides associated with cephalic ganglia regeneration in Schmidtea mediterranea

Ong, T. H., Romanova, E. V., Roberts-Galbraith, R. H., Yang, N., Zimmerman, T. A., Collins, J. J., Lee, J. E., Kelleher, N. L., Newmark, P. A. & Sweedler, J. V., Apr 8 2016, In: Journal of Biological Chemistry. 291, 15, p. 8109-8120 12 p.

Research output: Contribution to journal › Article › peer-review

2018

Animal Model Systems in Neuroscience

Romanova, E. V. & Sweedler, J. V., Aug 15 2018, In: ACS Chemical Neuroscience. 9, 8, p. 1869-1870 2 p.

Research output: Contribution to journal › Editorial › peer-review

2016

Please Welcome John Yates, III as Editor of the Journal of Proteome Research

Sweedler, J. V., Apr 1 2016, In: Journal of Proteome Research. 15, 4, p. 1115 1 p.

Research output: Contribution to journal › Editorial › peer-review

Single Cell Peptide Heterogeneity of Rat Islets of Langerhans

Jansson, E. T., Comi, T. J., Rubakhin, S. S. & Sweedler, J. V., Sep 16 2016, In: ACS chemical biology. 11, 9, p. 2588-2595 8 p.

Research output: Contribution to journal › Article › peer-review

2017

Discovery of leucokinin-like neuropeptides that modulate a specific parameter of feeding motor programs in the molluscan model, Aplysia

Zhang, G., Vilim, F. S., Liu, D. D., Romanova, E. V., Yu, K., Yuan, W. D., Xiao, H., Hummon, A. B., Chen, T. T., Alexeeva, V., Yin, S. Y., Chen, S. A., Cropper, E. C., Sweedler, J. V., Weiss, K. R. & Jing, J., Nov 17 2017, In: Journal of Biological Chemistry. 292, 46, p. 18775-18789 15 p.

Research output: Contribution to journal › Article › peer-review

2015

Microbeam-coupled capillary electrophoresis

Garty, G., Ehsan, M. U., Buonanno, M., Yang, Z., Sweedler, J. V. & Brenner, D. J., Sep 1 2015, In: Radiation Protection Dosimetry. 166, 1-4, p. 188-191 4 p., ncv148.

Research output: Contribution to journal › Article › peer-review

2018

Newly Identified Aplysia SPTR-Gene Family-Derived Peptides: Localization and Function

Zhang, G., Yuan, W. D., Vilim, F. S., Romanova, E. V., Yu, K., Yin, S. Y., Le, Z. W., Xue, Y. Y., Chen, T. T., Chen, G. K., Chen, S. A., Cropper, E. C., Sweedler, J. V., Weiss, K. R. & Jing, J., Aug 15 2018, In: ACS Chemical Neuroscience. 9, 8, p. 2041-2053 13 p.

Research output: Contribution to journal › Article › peer-review

2012

Relative quantitation of neuropeptides over a thousand-fold concentration range

Hou, X., Xie, F. & Sweedler, J. V., Dec 2012, In: Journal of the American Society for Mass Spectrometry. 23, 12, p. 2083-2093 11 p.

Research output: Contribution to journal › Article › peer-review

Secondary ion mass spectrometry imaging of molecular distributions in cultured neurons and their processes: Comparative analysis of sample preparation

Tucker, K. R., Li, Z., Rubakhin, S. S. & Sweedler, J. V., Nov 2012, In: Journal of the American Society for Mass Spectrometry. 23, 11, p. 1931-1938 8 p.

Research output: Contribution to journal › Article › peer-review

1-methylthio-d-xylulose 5-phosphate methylsulfurylase: A novel route to 1-deoxy-d-xylulose 5-phosphate in Rhodospirillum rubrum

Warlick, B. P., Evans, B. S., Erb, T. J., Ramagopal, U. A., Sriram, J., Imker, H. J., Sauder, J. M., Bonanno, J. B., Burley, S. K., Tabita, F. R., Almo, S. C., Sweedler, J. S. & Gerlt, J. A., Oct 23 2012, In: Biochemistry. 51, 42, p. 8324-8326 3 p.

Research output: Contribution to journal › Article › peer-review

2020

A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids

Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J. V. & Zhao, H., Jul 1 2020, In: Biotechnology and bioengineering. 117, 7, p. 2131-2138 8 p.

Research output: Contribution to journal › Article › peer-review

Removing Formaldehyde-Induced Peptidyl Crosslinks Enables Mass Spectrometry Imaging of Peptide Hormone Distributions from Formalin-Fixed Paraffin-Embedded Tissues

Lee, D. K., Rubakhin, S. S., Kusmartseva, I., Wasserfall, C., Atkinson, M. A. & Sweedler, J. V., Dec 7 2020, In: Angewandte Chemie - International Edition. 59, 50, p. 22584-22590 7 p.

Research output: Contribution to journal › Article › peer-review

2012

D-Aspartate acts as a signaling molecule in nervous and neuroendocrine systems

Ota, N., Shi, T. & Sweedler, J. V., Nov 2012, In: Amino Acids. 43, 5, p. 1873-1886 14 p.

Research output: Contribution to journal › Review article › peer-review

2018

A high spatiotemporal study of somatic exocytosis with scanning electrochemical microscopy and nanoITIES electrodes

Welle, T. M., Alanis, K., Colombo, M. L., Sweedler, J. V. & Shen, M., 2018, In: Chemical Science. 9, 22, p. 4937-4941 5 p.

Research output: Contribution to journal › Article › peer-review

2012

Glial D-serine gates NMDA receptors at excitatory synapses in prefrontal cortex

Fossat, P., Turpin, F. R., Sacchi, S., Dulong, J., Shi, T., Rivet, J. M., Sweedler, J. V., Pollegioni, L., Millan, M. J., Oliet, S. H. R. & Mothet, J. P., Mar 2012, In: Cerebral Cortex. 22, 3, p. 595-606 12 p.

Research output: Contribution to journal › Article › peer-review

2011

Probing the production of amidated peptides following genetic and dietary copper manipulations

Yin, P., Bousquet-Moore, D., Annangudi, S. P., Southey, B. R., Mains, R. E., Eipper, B. A. & Sweedler, J. V., Dec 16 2011, In: PloS one. 6, 12, e28679.

Research output: Contribution to journal › Article › peer-review

2012

Mechanical tension modulates local and global vesicle dynamics in neurons

Ahmed, W. W., Li, T. C., Rubakhin, S. S., Chiba, A., Sweedler, J. V. & Saif, T. A., Jun 1 2012, In: Cellular and Molecular Bioengineering. 5, 2, p. 155-164 10 p.

Research output: Contribution to journal › Article › peer-review

2017

Quantitative Reflection Imaging for the Morphology and Dynamics of Live Aplysia californica Pedal Ganglion Neurons Cultured on Nanostructured Plasmonic Crystals

Kang, S., Badea, A., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A. & Nuzzo, R. G., Sep 5 2017, In: Langmuir. 33, 35, p. 8640-8650 11 p.

Research output: Contribution to journal › Article › peer-review

2018

Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock

Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. U., Aug 15 2018, In: ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.

Research output: Contribution to journal › Article › peer-review

2012

Comparative peptidomics analysis of neural adaptations in rats repeatedly exposed to amphetamine

Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Nov 2012, In: Journal of Neurochemistry. 123, 2, p. 276-287 12 p.

Research output: Contribution to journal › Article › peer-review

2011

The modified-bead stretched sample method: Development and application to MALDI-MS imaging of protein localization in the spinal cord

Tucker, K. R., Serebryannyy, L. A., Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., 2011, In: Chemical Science. 2, 4, p. 785-795 11 p.

Research output: Contribution to journal › Article › peer-review

2017

Dopamine-modified TiO₂ monolith-assisted LDI MS imaging for simultaneous localization of small metabolites and lipids in mouse brain tissue with enhanced detection selectivity and sensitivity

Wu, Q., Chu, J. L., Rubakhin, S. S., Gillette, M. U. & Sweedler, J. V., 2017, In: Chemical Science. 8, 5, p. 3926-3938 13 p.

Research output: Contribution to journal › Article › peer-review

2016

Characterization of bacillus subtilis colony biofilms via mass spectrometry and fluorescence imaging

Si, T., Li, B., Zhang, K., Xu, Y., Zhao, H. & Sweedler, J. V., Jun 3 2016, In: Journal of Proteome Research. 15, 6, p. 1955-1962 8 p.

Research output: Contribution to journal › Article › peer-review

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