Find Research Outputs — University of Illinois at Urbana-Champaign

2019

Neuropeptidomics of the mammalian brain

Xie, F., Anapindi, K. D. B., Romanova, E. V. & Sweedler, J. V., Jan 1 2019, Neuromethods. Humana Press Inc., p. 161-177 17 p. (Neuromethods; vol. 146).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2011

Neuropeptidomics: Mass spectrometry-based qualitative and quantitative analysis

Yin, P., Hou, X., Romanova, E. V. & Sweedler, J. V., 2011, Neuropeptides: Methods and Protocols. Merighi, A. (ed.). p. 223-236 14 p. (Methods in Molecular Biology; vol. 789).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Using microfluidics and mass spectrometry to study peptide release in neurons

Croushore, C. A., Lee, C. Y., Zhong, M. & Sweedler, J. V., Dec 1 2011, 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011. p. 858-860 3 p. (15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011; vol. 2).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Direct cellular peptidomics of hypothalamic neurons

Mitchell, J. W., Atkins, N., Sweedler, J. V. & Gillette, M. U., Oct 2011, In: Frontiers in Neuroendocrinology. 32, 4, p. 377-386 10 p.

Research output: Contribution to journal › Review article › peer-review

2019

Spatiotemporal dynamics of molecular messaging in bacterial co-cultures studied by multimodal chemical imaging

Cao, T., Morales-Soto, N., Jia, J., Baig, N. F., Dunham, S. J. B., Ellis, J., Sweedler, J. V., Shrout, J. D. & Bohn, P. W., Jan 1 2019, Photonic Diagnosis and Treatment of Infections and Inflammatory Diseases II. Dai, T., Popp, J. & Wu, M. X. (eds.). SPIE, 108630A. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 10863).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2017

Profiling of Microbial Colonies for High-Throughput Engineering of Multistep Enzymatic Reactions via Optically Guided Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry

Si, T., Li, B., Comi, T. J., Wu, Y., Hu, P., Wu, Y., Min, Y., Mitchell, D. A., Zhao, H. & Sweedler, J. V., 2017, In: Journal of the American Chemical Society. 139, 36, p. 12466-12473 8 p.

Research output: Contribution to journal › Article › peer-review

2011

The mechanical sensitivity of vesicle dynamics in in vivo and in vitro neurons

Ahmed, W. W., Li, T. C., Rubakhin, S., Chiba, A., Sweedler, J. V. & Saif, M. T. A., Nov 23 2011, Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011. p. 436-439 4 p. (Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011; vol. 3).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2018

Rapid Screening of Lanthipeptide Analogs via In-Colony Removal of Leader Peptides in Escherichia coli

Si, T., Tian, Q., Min, Y., Zhang, L., Sweedler, J. V., Van Der Donk, W. A. & Zhao, H., Sep 26 2018, In: Journal of the American Chemical Society. 140, 38, p. 11884-11888 5 p.

Research output: Contribution to journal › Article › peer-review

2011

The enzyme function initiative

Gerlt, J. A., Allen, K. N., Almo, S. C., Armstrong, R. N., Babbitt, P. C., Cronan, J. E., Dunaway-Mariano, D., Imker, H. J., Jacobson, M. P., Minor, W., Poulter, C. D., Raushel, F. M., Sali, A., Shoichet, B. K. & Sweedler, J. V., Nov 22 2011, In: Biochemistry. 50, 46, p. 9950-9962 13 p.

Research output: Contribution to journal › Review article › peer-review

2018

The effects of aging on biosynthetic processes in the rat hypothalamic osmoregulatory neuroendocrine system

Greenwood, M. P., Greenwood, M., Romanova, E. V., Mecawi, A. S., Paterson, A., Sarenac, O., Japundžić-Žigon, N., Antunes-Rodrigues, J., Paton, J. F. R., Sweedler, J. V. & Murphy, D., May 2018, In: Neurobiology of Aging. 65, p. 178-191 14 p.

Research output: Contribution to journal › Article › peer-review

Single Cell Neurometabolomics

Qi, M., Philip, M. C., Yang, N. & Sweedler, J. V., Jan 17 2018, In: ACS Chemical Neuroscience. 9, 1, p. 40-50 11 p.

Research output: Contribution to journal › Review article › peer-review

2012

Label-free quantitation of peptide release from neurons in a microfluidic device with mass spectrometry imaging

Zhong, M., Lee, C. Y., Croushore, C. A. & Sweedler, J. V., May 8 2012, In: Lab on a chip. 12, 11, p. 2037-2045 9 p.

Research output: Contribution to journal › Article › peer-review

2013

Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus

Lee, J. E., Zamdborg, L., Southey, B. R., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Feb 1 2013, In: Journal of Proteome Research. 12, 2, p. 585-593 9 p.

Research output: Contribution to journal › Article › peer-review

Discovery of new enzymes and metabolic pathways by using structure and genome context

Zhao, S., Kumar, R., Sakai, A., Vetting, M. W., Wood, B. M. K., Brown, S., Bonanno, J. B., Hillerich, B. S., Seidel, R. D., Babbitt, P. C., Almo, S. C., Sweedler, J. V., Gerlt, J. A., Cronan, J. E. & Jacobson, M. P., 2013, In: Nature. 502, 7473, p. 698-702 5 p.

Research output: Contribution to journal › Article › peer-review

2012

Sampling techniques for single-cell electrophoresis

Cecala, C. & Sweedler, J. V., Jul 7 2012, In: Analyst. 137, 13, p. 2922-2929 8 p.

Research output: Contribution to journal › Review article › peer-review

2018

Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry—Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS

Li, L., Andrén, P. E. & Sweedler, J. V., May 1 2018, In: Journal of the American Society for Mass Spectrometry. 29, 5, p. 801-806 6 p.

Research output: Contribution to journal › Article › peer-review

2012

A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis

Erb, T. J., Evans, B. S., Cho, K., Warlick, B. P., Sriram, J., Wood, B. M. K., Imker, H. J., Sweedler, J. V., Tabita, F. R. & Gerlt, J. A., Nov 2012, In: Nature chemical biology. 8, 11, p. 926-932 7 p.

Research output: Contribution to journal › Article › peer-review

2013

Signals from the Brainstem Sleep/Wake Centers Regulate Behavioral Timing via the Circadian Clock

Abbott, S. M., Arnold, J. M., Chang, Q., Miao, H., Ota, N., Cecala, C., Gold, P. E., Sweedler, J. V. & Gillette, M. U., Aug 12 2013, In: PloS one. 8, 8, e70481.

Research output: Contribution to journal › Article › peer-review

2018

Disruption of microglia histone acetylation and protein pathways in mice exhibiting inflammation-associated depression-like symptoms

Rodriguez-Zas, S. L., Wu, C., Southey, B. R., O'Connor, J. C., Nixon, S. E., Garcia, R., Zavala, C., Lawson, M., McCusker, R. H., Romanova, E. V., Sweedler, J. V., Kelley, K. W. & Dantzer, R., Nov 2018, In: Psychoneuroendocrinology. 97, p. 47-58 12 p.

Research output: Contribution to journal › Article › peer-review

2019

Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel

Alim, F. Z. D., Romanova, E. V., Tay, Y. L., Rahman, A. Y. B. A., Chan, K. G., Hong, K. W., Rogers, M., Southey, B. R., Greenwood, M. P., Mecawi, A. S., Mustafa, M. R., Mahy, N., Campbell, C., Antunes-Rodrigues, J., Sweedler, J. V., Murphy, D. & Hindmarch, C. C. T., Jun 2019, In: PloS one. 14, 6, e0216679.

Research output: Contribution to journal › Article › peer-review

Open Access

2017

Deterministic Integration of Biological and Soft Materials onto 3D Microscale Cellular Frameworks

McCracken, J. M., Xu, S., Badea, A., Jang, K. I., Yan, Z., Wetzel, D. J., Nan, K., Lin, Q., Han, M., Anderson, M. A., Lee, J. W., Wei, Z., Pharr, M., Wang, R., Su, J., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A. & Nuzzo, R. G., Sep 2017, In: Advanced Biosystems. 1, 9, 1700068.

Research output: Contribution to journal › Article › peer-review

Open Access

2012

Serotonin of mast cell origin contributes to hippocampal function

Nautiyal, K. M., Dailey, C. A., Jahn, J. L., Rodriquez, E., Son, N. H., Sweedler, J. V. & Silver, R., Aug 2012, In: European Journal of Neuroscience. 36, 3, p. 2347-2359 13 p.

Research output: Contribution to journal › Article › peer-review

2017

Three-dimensional mesostructures as high-temperature growth templates, electronic cellular scaffolds, and self-propelled microrobots

Yan, Z., Han, M., Shi, Y., Badea, A., Yang, Y., Kulkarni, A., Hanson, E., Kandel, M. E., Wen, X., Zhang, F., Luo, Y., Lin, Q., Zhang, H., Guo, X., Huang, Y., Nan, K., Jia, S., Oraham, A. W., Mevis, M. B., Lim, J. & 19 others, Guo, X., Gao, M., Ryu, W., Yu, K. J., Nicolau, B. G., Petronico, A., Rubakhin, S. S., Lou, J., Ajayan, P. M., Thornton, K., Popescu, G., Fang, D., Sweedler, J. V., Braun, P. V., Zhang, H., Nuzzo, R. G., Huang, Y., Zhang, Y. & Rogers, J. A., Nov 7 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 45, p. E9455-E9464

Research output: Contribution to journal › Article › peer-review

2013

Progress toward single cell metabolomics

Rubakhin, S. S., Lanni, E. J. & Sweedler, J. V., Feb 2013, In: Current Opinion in Biotechnology. 24, 1, p. 95-104 10 p.

Research output: Contribution to journal › Review article › peer-review

2018

Expired Epinephrine Maintains Chemical Concentration and Sterility

Weir, W. B., Fred, L. Y., Pike, M., Rubakhin, S. S., Ludwig, T. J., Shar, A. M., Zhu, L., Frederick, A., Uzoaru, I., Wang, L. & Sweedler, J. V., Jul 4 2018, In: Prehospital Emergency Care. 22, 4, p. 414-418 5 p.

Research output: Contribution to journal › Article › peer-review

2012

The Hypothalamic-Neurohypophyseal System: From Genome to Physiology

Murphy, D., Konopacka, A., Hindmarch, C., Paton, J. F. R., Sweedler, J. V., Gillette, M. U., Ueta, Y., Grinevich, V., Lozic, M. & Japundzic-Zigon, N., Apr 2012, In: Journal of Neuroendocrinology. 24, 4, p. 539-553 15 p.

Research output: Contribution to journal › Review article › peer-review

Single-cell metabolomics: Changes in the metabolome of freshly isolated and cultured neurons

Nemes, P., Knolhoff, A. M., Rubakhin, S. S. & Sweedler, J. V., Oct 17 2012, In: ACS Chemical Neuroscience. 3, 10, p. 782-792 11 p.

Research output: Contribution to journal › Article › peer-review

Mass spectrometry imaging and profiling of single cells

Lanni, E. J., Rubakhin, S. S. & Sweedler, J. V., Aug 30 2012, In: Journal of Proteomics. 75, 16, p. 5036-5051 16 p.

Research output: Contribution to journal › Review article › peer-review

2018

Interrogation of spatial metabolome of Ginkgo biloba with high-resolution matrix-assisted laser desorption/ionization and laser desorption/ionization mass spectrometry imaging

Li, B., Neumann, E. K., Ge, J., Gao, W., Yang, H., Li, P. & Sweedler, J. V., Nov 2018, In: Plant Cell and Environment. 41, 11, p. 2693-2703 11 p.

Research output: Contribution to journal › Article › peer-review

2013

Visualizing the proteome: Mapping protein changes in disease states with mass spectrometry imaging

Lanni, E. J., Rubakhin, S. & Sweedler, J. V., Mar 2013, In: Journal of Neurochemistry. 124, 5, p. 581-583 3 p.

Research output: Contribution to journal › Review article › peer-review

Laminar stream of detergents for subcellular neurite damage in a microfluidic device: A simple tool for the study of neuroregeneration

Lee, C. Y., Romanova, E. V. & Sweedler, J. V., Jun 2013, In: Journal of Neural Engineering. 10, 3, 036020.

Research output: Contribution to journal › Article › peer-review

2018

Peptide identifications and false discovery rates using different mass spectrometry platforms

Anapindi, K. D. B., Romanova, E. V., Southey, B. R. & Sweedler, J. V., May 15 2018, In: Talanta. 182, p. 456-463 8 p.

Research output: Contribution to journal › Article › peer-review

2013

Stimulation and release from neurons via a dual capillary collection device interfaced to mass spectrometry

Fan, Y., Lee, C. Y., Rubakhin, S. S. & Sweedler, J. V., Nov 7 2013, In: Analyst. 138, 21, p. 6337-6346 10 p.

Research output: Contribution to journal › Article › peer-review

2019

Lipid Heterogeneity between Astrocytes and Neurons Revealed by Single-Cell MALDI-MS Combined with Immunocytochemical Classification

Neumann, E. K., Comi, T. J., Rubakhin, S. S. & Sweedler, J. V., Apr 23 2019, In: Angewandte Chemie - International Edition. 58, 18, p. 5910-5914 5 p.

Research output: Contribution to journal › Article › peer-review

2017

3D-Printed pHEMA Materials for Topographical and Biochemical Modulation of Dorsal Root Ganglion Cell Response

Badea, A., McCracken, J. M., Tillmaand, E. G., Kandel, M. E., Oraham, A. W., Mevis, M. B., Rubakhin, S. S., Popescu, G., Sweedler, J. V. & Nuzzo, R. G., Sep 13 2017, In: ACS Applied Materials and Interfaces. 9, 36, p. 30318-30328 11 p.

Research output: Contribution to journal › Article › peer-review

2018

Gene network dysregulation in the trigeminal ganglia and nucleus accumbens of a model of chronic migraine-associated hyperalgesia

Jeong, H., Moye, L. S., Southey, B. R., Hernandez, A. G., Dripps, I., Romanova, E. V., Rubakhin, S. S., Sweedler, J. V., Pradhan, A. A. & Rodriguez-Zas, S. L., Dec 18 2018, In: Frontiers in Systems Neuroscience. 12, 63.

Research output: Contribution to journal › Article › peer-review

2017

Mass spectrometry imaging of complex microbial communities

Dunham, S. J. B., Ellis, J. F., Li, B. & Sweedler, J. V., 2017, In: Accounts of chemical research. 50, 1, p. 96-104 9 p.

Research output: Contribution to journal › Article › peer-review

A unique combination of micronutrients rejuvenates cognitive performance in aged mice

Perez, S. D., Du, K., Rendeiro, C., Wang, L., Wu, Q., Rubakhin, S. S., Vazhappilly, R., Baxter, J. H., Sweedler, J. V. & Rhodes, J. S., Mar 1 2017, In: Behavioural Brain Research. 320, p. 97-112 16 p.

Research output: Contribution to journal › Article › peer-review

2019

PACAP and other neuropeptide targets link chronic migraine and opioid-induced hyperalgesia in mouse models

Anapindi, K. D. B., Yang, N., Romanova, E. V., Rubakhin, S. S., Tipton, A., Dripps, I., Sheets, Z., Sweedler, J. V. & Pradhan, A. A., 2019, In: Molecular and Cellular Proteomics. 18, 12, p. 2447-2458 12 p.

Research output: Contribution to journal › Article › peer-review

Aplysia allatotropin-related peptide and its newly identified D-amino acid-containing epimer both activate a receptor and a neuronal target

Checco, J. W., Zhang, G., Yuan, W. D., Le, Z. W., Jing, J. & Sweedler, J. V., Oct 26 2019, In: Journal of Biological Chemistry. 293, 43, p. 16862-16873 12 p.

Research output: Contribution to journal › Article › peer-review

2011

Metabolic differentiation of neuronal phenotypes by single-cell capillary electrophoresis-electrospray ionization-mass spectrometry

Nemes, P., Knolhoff, A. M., Rubakhin, S. S. & Sweedler, J. V., Sep 1 2011, In: Analytical chemistry. 83, 17, p. 6810-6817 8 p.

Research output: Contribution to journal › Article › peer-review

2012

Filling Royce's shoes

Sweedler, J., Jan 3 2012, In: Analytical chemistry. 84, 1, 1 p.

Research output: Contribution to journal › Editorial › peer-review

2018

A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms

Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., King, T. L., Amaya, K. R., Arnett, C. M. & Sweedler, J. V., Jun 5 2018, In: Analytical Chemistry. 90, 11, p. 6725-6734 10 p.

Research output: Contribution to journal › Article › peer-review