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  • Joseph Maria Kumar Irudayaraj
2016

Optogenetic regulation of site-specific subtelomeric DNA-methylation

Choudhury, S. R., Cui, Y., Narayanan, A., Gilley, D. P., Huda, N., Lo, C. L., Zhou, F. C., Yernool, D. & Irudayaraj, J., Jan 1 2016, In : Oncotarget. 7, 31, p. 50380-50391 12 p.

Research output: Contribution to journalArticle

2014

Quantifying local density of optical states of nanorods by fluorescence lifetime imaging

Liu, J., Jiang, X., Ishii, S., Shalaev, V. & Irudayaraj, J., Jan 1 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 89501E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8950).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Bimodal counterpropagating-responsive sensing material for the detection of histamine

Wu, Z., Xu, E., Jiao, A., Jin, Z. & Irudayaraj, J., Jan 1 2017, In : RSC Advances. 7, 71, p. 44933-44944 12 p.

Research output: Contribution to journalArticle

2015

Enhanced multiphoton emission from CdTe/ZnS quantum dots decorated on single-layer graphene

Liu, J., Kumar, P., Hu, Y., Cheng, G. J. & Irudayaraj, J., Mar 19 2015, In : Journal of Physical Chemistry C. 119, 11, p. 6331-6336 6 p.

Research output: Contribution to journalArticle

2014

Targeted in vivo photodynamic therapy with epidermal growth factor receptor-specific peptide linked nanoparticles

Narsireddy, A., Vijayashree, K., Irudayaraj, J., Manorama, S. V. & Rao, N. M., Aug 25 2014, In : International Journal of Pharmaceutics. 471, 1-2, p. 421-429 9 p.

Research output: Contribution to journalArticle

Quantification of 5-methylcytosine, 5-hydroxymethylcytosine and 5-carboxylcytosine from the blood of cancer patients by an enzyme-based immunoassay

Chowdhury, B., Cho, I. H., Hahn, N. & Irudayaraj, J., Dec 10 2014, In : Analytica Chimica Acta. 852, p. 212-217 6 p.

Research output: Contribution to journalArticle

2013

One-stop genomic DNA extraction by salicylic acid-coated magnetic nanoparticles

Zhou, Z., Kadam, U. S. & Irudayaraj, J., Jan 1 2013, In : Analytical Biochemistry. 442, 2, p. 249-252 4 p.

Research output: Contribution to journalArticle

2017

Epigenetic Editing of Ascl1 Gene in Neural Stem Cells by Optogenetics

Lo, C. L., Choudhury, S. R., Irudayaraj, J. & Zhou, F. C., Feb 9 2017, In : Scientific reports. 7, 42047.

Research output: Contribution to journalArticle

2013

A titanium nitride based metamaterial for applications in the visible

Naik, G. V., Saha, B., Liu, J., Saber, S. M., Stach, E., Irudayaraj, J. M. K., Sands, T. D., Shalaev, V. M. & Boltasseva, A., Jan 1 2013, 2013 Conference on Lasers and Electro-Optics, CLEO 2013. IEEE Computer Society, 6834507. (2013 Conference on Lasers and Electro-Optics, CLEO 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

In vivo biodetection using surface-enhanced raman spectroscopy

Lee, S., Kadam, U. S., Craig, A. P. & Irudayaraj, J., Jan 1 2017, Biosensors Based on Nanomaterials and Nanodevices. Li, J. & Wu, N. (eds.). CRC Press, p. 157-178 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

Real-time dynamics of methyl-CpG-binding domain protein 3 and its role in DNA demethylation by fluorescence correlation spectroscopy

Cui, Y., Cho, I. H., Chowdhury, B. & Irudayaraj, J., Oct 2013, In : Epigenetics. 8, 10, p. 1089-1100 12 p.

Research output: Contribution to journalArticle

2015

Nanoscale histone localization in live cells reveals reduced chromatin mobility in response to DNA damage

Liu, J., Vidi, P. A., Lelièvre, S. A. & Irudayaraj, J. M. K., Jan 1 2015, In : Journal of cell science. 128, 3, p. 599-604 6 p.

Research output: Contribution to journalArticle

2014

Understanding the mechanical properties of DNA origami tiles and controlling the kinetics of their folding and unfolding reconfiguration

Chen, H., Weng, T. W., Riccitelli, M. M., Cui, Y., Irudayaraj, J. & Choi, J. H., May 14 2014, In : Journal of the American Chemical Society. 136, 19, p. 6995-7005 11 p.

Research output: Contribution to journalArticle

2015

Inside single cells: Quantitative analysis with advanced optics and nanomaterials

Cui, Y. & Irudayaraj, J., May 1 2015, In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 7, 3, p. 387-407 21 p.

Research output: Contribution to journalReview article

2013

A hybrid FLIM-elastic net platform for label free profiling of breast cancer

Damayanti, N. P., Craig, A. P. & Irudayaraj, J., Dec 7 2013, In : Analyst. 138, 23, p. 7127-7134 8 p.

Research output: Contribution to journalArticle

2016

Kinase phosphorylation monitoring with i-motif DNA cross-linked SERS probes

Ren, W., Damayanti, N. P., Wang, X. & Irudayaraj, J. M. K., Jan 7 2016, In : Chemical Communications. 52, 2, p. 410-413 4 p.

Research output: Contribution to journalArticle

2014

Quantifying the local density of optical states of nanorods by fluorescence lifetime imaging

Liu, J., Jiang, X., Ishii, S., Shalaev, V. & Irudayaraj, J., Jun 2014, In : New Journal of Physics. 16, 063069.

Research output: Contribution to journalArticle

2015

A wireless chemical sensing scheme using ultrasonic imaging of microbubble embeded hydrogel

Park, J. H., Kim, A., Song, S. H., Bhandari, P., Irudayaraj, J. & Ziaie, B., Aug 5 2015, 2015 Transducers - 2015 18th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS 2015. Institute of Electrical and Electronics Engineers Inc., p. 2220-2223 4 p. 7181402. (2015 Transducers - 2015 18th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Optical Clearing Delivers Ultrasensitive Hyperspectral Dark-Field Imaging for Single-Cell Evaluation

Cui, Y., Wang, X., Ren, W., Liu, J. & Irudayaraj, J., Mar 22 2016, In : ACS Nano. 10, 3, p. 3132-3143 12 p.

Research output: Contribution to journalArticle

2018

An ultrasensitive aptasensor based on fluorescent resonant energy transfer and exonuclease-assisted target recycling for patulin detection

Wu, Z., Xu, E., Jin, Z. & Irudayaraj, J., May 30 2018, In : Food chemistry. 249, p. 136-142 7 p.

Research output: Contribution to journalArticle

2014

MRNA quantification via second harmonic super resolution microscopy

Liu, J., Cho, I. H., Kadam, U. & Irudayaraj, J., Jan 1 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 89500N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8950).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

An integrated microsystem with dielectrophoresis enrichment and impedance detection for detection of Escherichia coli

Wang, R., Xu, Y., Liu, H., Peng, J., Irudayaraj, J. & Cui, F., Jun 1 2017, In : Biomedical microdevices. 19, 2, 34.

Research output: Contribution to journalArticle

2020

Acute PFOA exposure promotes epigenomic alterations in mouse kidney tissues

Rashid, F., Ramakrishnan, A., Fields, C. & Irudayaraj, J., 2020, In : Toxicology Reports. 7, p. 125-132 8 p.

Research output: Contribution to journalArticle

Open Access
2014

Epitaxial superlattices with titanium nitride as a plasmonic component for optical hyperbolic metamaterials

Naik, G. V., Saha, B., Liu, J., Saber, S. M., Stach, E. A., Irudayaraj, J. M. K., Sands, T. D., Shalaev, V. M. & Boltasseva, A., May 27 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 21, p. 7546-7551 6 p.

Research output: Contribution to journalArticle

2011

Separation and detection of multiple pathogens in a food matrix by magnetic SERS nanoprobes

Wang, Y., Ravindranath, S. & Irudayaraj, J., Jan 1 2011, In : Analytical and bioanalytical chemistry. 399, 3, p. 1271-1278 8 p.

Research output: Contribution to journalArticle

2017

Highly sensitive fluorescence sensing of zearalenone using a novel aptasensor based on upconverting nanoparticles

Wu, Z., Xu, E., Chughtai, M. F. J., Jin, Z. & Irudayaraj, J., Sep 1 2017, In : Food chemistry. 230, p. 673-680 8 p.

Research output: Contribution to journalArticle

Real-Time Multiplex Kinase Phosphorylation Sensors in Living Cells

Damayanti, N. P., Buno, K., Cui, Y., Voytik-Harbin, S. L., Pili, R., Freeman, J. & Irudayaraj, J. M. K., Aug 25 2017, In : ACS Sensors. 2, 8, p. 1225-1230 6 p.

Research output: Contribution to journalArticle

2016

Epigenetic toxicity of trichloroethylene: A single-molecule perspective

Cui, Y., Choudhury, S. R. & Irudayaraj, J., Jan 1 2016, In : Toxicology Research. 5, 2, p. 641-650 10 p.

Research output: Contribution to journalArticle

2014

NuMA promotes homologous recombination repair by regulating the accumulation of the ISWI ATPase SNF2h at DNA breaks

Vidi, P. A., Liu, J., Salles, D., Jayaraman, S., Dorfman, G., Gray, M., Abad, P., Moghe, P. V., Irudayaraj, J. M., Wiesmüller, L. & Lelièvre, S. A., 2014, In : Nucleic acids research. 42, 10, p. 6365-6379 15 p.

Research output: Contribution to journalArticle

2011

Nuclear targeting dynamics of gold nanoclusters for enhanced therapy of HER2 + breast cancer

Wang, Y., Chen, J. & Irudayaraj, J., Dec 27 2011, In : ACS Nano. 5, 12, p. 9718-9725 8 p.

Research output: Contribution to journalArticle

2016

Ultrasensitive detection of microbial cells using magnetic focus enhanced lateral flow sensors

Ren, W., Cho, I. H., Zhou, Z. & Irudayaraj, J., Jan 1 2016, In : Chemical Communications. 52, 27, p. 4930-4933 4 p.

Research output: Contribution to journalArticle

2015

Modified graphene oxide sensors for ultra-sensitive detection of nitrate ions in water

Ren, W., Mura, S. & Irudayaraj, J. M. K., Jun 14 2015, In : Talanta. 143, p. 234-239 6 p., 15665.

Research output: Contribution to journalArticle

2012

Multifunctional gold nanorod theragnostics probed by multi-photon imaging

Book Newell, B., Wang, Y. & Irudayaraj, J., Feb 1 2012, In : European Journal of Medicinal Chemistry. 48, p. 330-337 8 p.

Research output: Contribution to journalArticle

2017

A reusable laser wrapped graphene-Ag array based SERS sensor for trace detection of genomic DNA methylation

Ouyang, L., Hu, Y., Zhu, L., Cheng, G. J. & Irudayaraj, J., Jun 15 2017, In : Biosensors and Bioelectronics. 92, p. 755-762 8 p.

Research output: Contribution to journalArticle

2018

Ultrasound beam steering of oxygen nanobubbles for enhanced bladder cancer therapy

Bhandari, P., Novikova, G., Goergen, C. J. & Irudayaraj, J., Dec 1 2018, In : Scientific reports. 8, 1, 3112.

Research output: Contribution to journalArticle

2011

Fluorescent Ag clusters via a protein-directed approach as a Hg(II) ion sensor

Guo, C. & Irudayaraj, J., Apr 15 2011, In : Analytical chemistry. 83, 8, p. 2883-2889 7 p.

Research output: Contribution to journalArticle

2017

Single molecule Raman spectroscopic assay to detect transgene from GM plants

Kadam, U. S., Chavhan, R. L., Schulz, B. & Irudayaraj, J., Sep 1 2017, In : Analytical Biochemistry. 532, p. 60-63 4 p.

Research output: Contribution to journalArticle

Toxicological effects of trichloroethylene exposure on immune disorders

Ordaz, J. D., Damayanti, N. P. & Irudayaraj, J. M. K., Nov 2 2017, In : Immunopharmacology and Immunotoxicology. 39, 6, p. 305-317 13 p.

Research output: Contribution to journalReview article

Oxygen Nanobubble Tracking by Light Scattering in Single Cells and Tissues

Bhandari, P., Wang, X. & Irudayaraj, J., Mar 28 2017, In : ACS Nano. 11, 3, p. 2682-2688 7 p.

Research output: Contribution to journalArticle

2013

In-situ immuno-gold nanoparticle network ELISA biosensors for pathogen detection

Cho, I. H. & Irudayaraj, J., Jun 3 2013, In : International Journal of Food Microbiology. 164, 1, p. 70-75 6 p.

Research output: Contribution to journalArticle

2015

Latest developments of nanotoxicology in plants

Mura, S., Greppi, G. & Irudayaraj, J., Jan 1 2015, Nanotechnology and Plant Sciences: Nanoparticles and Their Impact on Plants. Springer International Publishing, p. 125-151 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

A study of alterations in DNA epigenetic modifications (5mC and 5hmC) and gene expression influenced by simulated microgravity in human lymphoblastoid cells

Chowdhury, B., Seetharam, A., Wang, Z., Liu, Y., Lossie, A. C., Thimmapuram, J. & Irudayaraj, J., Jan 1 2016, In : PloS one. 11, 1, e0147514.

Research output: Contribution to journalArticle

2011

A SERS DNAzyme biosensor for lead ion detection

Wang, Y. & Irudayaraj, J., Mar 29 2011, In : Chemical Communications. 47, 15, p. 4394-4396 3 p.

Research output: Contribution to journalArticle

2015

Selective increase in subtelomeric DNA methylation: An epigenetic biomarker for malignant glioma

Choudhury, S. R., Cui, Y., Milton, J. R., Li, J. & Irudayaraj, J., Oct 7 2015, In : Clinical epigenetics. 7, 1, 107.

Research output: Contribution to journalArticle

2017

Monitoring focal adhesion kinase phosphorylation dynamics in live cells

Damayanti, N. P., Buno, K., Narayanan, N., Voytik Harbin, S. L., Deng, M. & Irudayaraj, J. M. K., Aug 7 2017, In : Analyst. 142, 15, p. 2713-2716 4 p.

Research output: Contribution to journalArticle

2013

New approaches in microbial pathogen detection

Kahyaoglu, L. N. & Irudayaraj, J., Jul 1 2013, Advances in Microbial Food Safety. Elsevier Ltd, Vol. 1. p. 202-226 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014
2013

Nanostructured thin films as surface-enhanced Raman scattering substrates

Mura, S., Greppi, G., Innocenzi, P., Piccinini, M., Figus, C., Marongiu, M. L., Guo, C. & Irudayaraj, J., Jan 1 2013, In : Journal of Raman Spectroscopy. 44, 1, p. 35-40 6 p.

Research output: Contribution to journalArticle

2015

Fourier transform infrared spectroscopy and near infrared spectroscopy for the quantification of defects in roasted coffees

Craig, A. P., Franca, A. S., Oliveira, L. S., Irudayaraj, J. & Ileleji, K., Mar 1 2015, In : Talanta. 134, p. 379-386 8 p.

Research output: Contribution to journalArticle

2017

PLGA-PEG nano-delivery system for epigenetic therapy

Naz, A., Cui, Y., Collins, C. J., Thompson, D. H. & Irudayaraj, J., Jun 1 2017, In : Biomedicine and Pharmacotherapy. 90, p. 586-597 12 p.

Research output: Contribution to journalArticle