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Author

  • Jonathan V Sweedler
2010

A mass spectrometry primer for mass spectrometry imaging

Rubakhin, S. S. & Sweedler, J. V., Dec 1 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 21-49 29 p. (Methods in Molecular Biology; vol. 656).

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

The Scope of Analytical Chemistry

Sweedler, J. V., Armstrong, D. W., Baba, Y., Desmet, G., Dovichi, N., Ewing, A., Fenselau, C. C., Kennedy, R. T., Larive, C. K., Ligler, F. S., McCreery, R. L., Niessner, R., Pemberton, J. E., Tan, W., Walt, D. R., Yates, J. R., Zenobi, R. & Zhang, X., Jul 7 2015, In : Analytical chemistry. 87, 13, 1 p.

Research output: Contribution to journalEditorial

2013

Combining small-volume metabolomic and transcriptomic approaches for assessing brain chemistry

Knolhoff, A. M., Nautiyal, K. M., Nemes, P., Kalachikov, S., Morozova, I., Silver, R. & Sweedler, J. V., Mar 19 2013, In : Analytical chemistry. 85, 6, p. 3136-3143 8 p.

Research output: Contribution to journalArticle

2019

What Does Your Future Academic Productivity Depend On?

Sweedler, J. V., Sep 3 2019, In : Analytical chemistry. 91, 17, 1 p.

Research output: Contribution to journalEditorial

Open Access
2016

A one-step matrix application method for MALDI mass spectrometry imaging of bacterial colony biofilms

Li, B., Comi, T. J., Si, T., Dunham, S. J. B. & Sweedler, J. V., Nov 1 2016, In : Journal of Mass Spectrometry. 51, 11, p. 1030-1035 6 p.

Research output: Contribution to journalArticle

2017

3D-Printed pHEMA Materials for Topographical and Biochemical Modulation of Dorsal Root Ganglion Cell Response

Badea, A., McCracken, J. M., Tillmaand, E. G., Kandel, M. E., Oraham, A. W., Mevis, M. B., Rubakhin, S. S., Popescu, G., Sweedler, J. V. & Nuzzo, R. G., Sep 13 2017, In : ACS Applied Materials and Interfaces. 9, 36, p. 30318-30328 11 p.

Research output: Contribution to journalArticle

2018

Peptide identifications and false discovery rates using different mass spectrometry platforms

Anapindi, K. D. B., Romanova, E. V., Southey, B. R. & Sweedler, J. V., May 15 2018, In : Talanta. 182, p. 456-463 8 p.

Research output: Contribution to journalArticle

2015

Are We There Yet? Biases in Hiring Women Faculty Candidates

Haynes, C. & Sweedler, J., Jul 21 2015, In : Analytical chemistry. 87, 14, 1 p.

Research output: Contribution to journalEditorial

2017
2010

Neuropeptide release is impaired in a mouse model of fragile x mental retardation syndrome

Annangudi, S. P., Luszpak, A. E., Kim, S. H., Ren, S., Hatcher, N. G., Weiler, I. J., Thornley, K. T., Kile, B. M., Wightman, R. M., Greenough, W. T. & Sweedler, J. V., Apr 21 2010, In : ACS Chemical Neuroscience. 1, 4, p. 306-314 9 p.

Research output: Contribution to journalArticle

2013

Multifactorial understanding of ion abundance in tandem mass spectrometry experiments

Fazal, Z., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Mar 12 2013, In : Journal of Proteomics and Bioinformatics. 6, 2, p. 23-29 7 p.

Research output: Contribution to journalArticle

2019

Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens

Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A. & Rodriguez-Zas, S. L., Dec 1 2019, In : Molecular Neurobiology. 56, 12, p. 7929-7949 21 p.

Research output: Contribution to journalArticle

2018

Disruption of microglia histone acetylation and protein pathways in mice exhibiting inflammation-associated depression-like symptoms

Rodriguez-Zas, S. L., Wu, C., Southey, B. R., O'Connor, J. C., Nixon, S. E., Garcia, R., Zavala, C., Lawson, M., McCusker, R. H., Romanova, E. V., Sweedler, J. V., Kelley, K. W. & Dantzer, R., Nov 2018, In : Psychoneuroendocrinology. 97, p. 47-58 12 p.

Research output: Contribution to journalArticle

2010

The genome of a songbird

Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M., Balakrishnan, C. N. & 62 others, Sinha, S., Blatti, C., London, S. E., Li, Y., Lin, Y. C., George, J., Sweedler, J., Southey, B., Gunaratne, P., Watson, M., Nam, K., Backström, N., Smeds, L., Nabholz, B., Itoh, Y., Whitney, O., Pfenning, A. R., Howard, J., Völker, M., Skinner, B. M., Griffin, D. K., Ye, L., McLaren, W. M., Flicek, P., Quesada, V., Velasco, G., Lopez-Otin, C., Puente, X. S., Olender, T., Lancet, D., Smit, A. F. A., Hubley, R., Konkel, M. K., Walker, J. A., Batzer, M. A., Gu, W., Pollock, D. D., Chen, L., Cheng, Z., Eichler, E. E., Stapley, J., Slate, J., Ekblom, R., Birkhead, T., Burke, T., Burt, D., Scharff, C., Adam, I., Richard, H., Sultan, M., Soldatov, A., Lehrach, H., Edwards, S. V., Yang, S. P., Li, X., Graves, T., Fulton, L., Nelson, J., Chinwalla, A., Hou, S., Mardis, E. R. & Wilson, R. K., Apr 1 2010, In : Nature. 464, 7289, p. 757-762 6 p.

Research output: Contribution to journalArticle

The zebra finch neuropeptidome: Prediction, detection and expression

Xie, F., London, S. E., Southey, B. R., Annangudi, S. P., Amare, A., Rodriguez-Zas, S. L., Clayton, D. F. & Sweedler, J. V., Apr 1 2010, In : BMC biology. 8, 28.

Research output: Contribution to journalArticle

2018
2014

Identification of best indicators of peptide-spectrum match using a permutation resampling approach

Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 30 2014, In : Journal of Bioinformatics and Computational Biology. 12, 5, 1440001.

Research output: Contribution to journalArticle

Understanding the impact of fractionation and dynamic exclusion on proteomics

Zavala, C., Nixon, S., Southey, B. R., Wu, C., Romanova, E. V., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 93-96 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

Mechanical tension modulates local and global vesicle dynamics in neurons

Ahmed, W. W., Li, T. C., Rubakhin, S. S., Chiba, A., Sweedler, J. V. & Saif, T. A., Jun 1 2012, In : Cellular and Molecular Bioengineering. 5, 2, p. 155-164 10 p.

Research output: Contribution to journalArticle

2014

Application of capillary electrophoresis for the early diagnosis of cancer

Yang, Z. & Sweedler, J. V., Jul 2014, In : Analytical and bioanalytical chemistry. 406, 17, p. 4013-4031 19 p.

Research output: Contribution to journalReview article

2018

Single Cell Neurometabolomics

Qi, M., Philip, M. C., Yang, N. & Sweedler, J. V., Jan 17 2018, In : ACS Chemical Neuroscience. 9, 1, p. 40-50 11 p.

Research output: Contribution to journalReview article

2016

Free D-aspartate in nonmammalian animals: Detection, localization, metabolism, and function

Patel, A. V., Kawai, T., Rubakhin, S. & Sweedler, J. V., Jan 1 2016, D-Amino Acids: Physiology, Metabolism, and Application. Springer Japan, p. 173-197 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry

Monroe, E. B., Annangudi, S. P., Wadhams, A. A., Richmond, T. A., Yang, N., Southey, B. R., Romanova, E. V., Schoofs, L., Baggerman, G. & Sweedler, J. V., May 1 2018, In : Journal of the American Society for Mass Spectrometry. 29, 5, p. 923-934 12 p.

Research output: Contribution to journalArticle

Science Research - Looking in the Mirror

Sweedler, J. V., Nov 6 2018, In : Analytical chemistry. 90, 21, p. 12323-12324 2 p.

Research output: Contribution to journalEditorial

2016

Our evolving editorial team

Sweedler, J. V., Sep 6 2016, In : Analytical chemistry. 88, 17, 1 p.

Research output: Contribution to journalEditorial

2018

Multimodal Chemical Analysis of the Brain by High Mass Resolution Mass Spectrometry and Infrared Spectroscopic Imaging

Neumann, E. K., Comi, T. J., Spegazzini, N., Mitchell, J. W., Rubakhin, S. S., Gillette, M. U., Bhargava, R. & Sweedler, J. V., Oct 2 2018, In : Analytical chemistry. 90, 19, p. 11572-11580 9 p.

Research output: Contribution to journalArticle

2012

Sampling techniques for single-cell electrophoresis

Cecala, C. & Sweedler, J. V., Jul 7 2012, In : Analyst. 137, 13, p. 2922-2929 8 p.

Research output: Contribution to journalReview article

1-methylthio-d-xylulose 5-phosphate methylsulfurylase: A novel route to 1-deoxy-d-xylulose 5-phosphate in Rhodospirillum rubrum

Warlick, B. P., Evans, B. S., Erb, T. J., Ramagopal, U. A., Sriram, J., Imker, H. J., Sauder, J. M., Bonanno, J. B., Burley, S. K., Tabita, F. R., Almo, S. C., Sweedler, J. S. & Gerlt, J. A., Oct 23 2012, In : Biochemistry. 51, 42, p. 8324-8326 3 p.

Research output: Contribution to journalArticle

2017

Use the Supporting Information, but Do Not Leave Critical Details out of the Main Manuscript

Sweedler, J. V., Nov 7 2017, In : Analytical chemistry. 89, 21, 1 p.

Research output: Contribution to journalEditorial

2016

The Midwest Universities Analytical Chemistry Conference: Still the Midwest's Secret Weapon?

Sweedler, J. V., Nov 1 2016, In : Analytical chemistry. 88, 21, 1 p.

Research output: Contribution to journalEditorial

2014

Publish only your original research

Sweedler, J. V., Apr 1 2014, In : Analytical chemistry. 86, 7, 1 p.

Research output: Contribution to journalEditorial

2010

Genome-wide analyses reveal a role for peptide hormones in planarian germline development

Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A., Oct 1 2010, In : PLoS biology. 8, 10, e1000509.

Research output: Contribution to journalArticle

2015

The Analytical Chemistry Virtual Issue Featuring our Advisory Boards

Sweedler, J. V., Sep 15 2015, In : Analytical chemistry. 87, 18, 1 p.

Research output: Contribution to journalEditorial

2016

Career Advice for Graduate Students and Postdoctoral Fellows

Sweedler, J. V., Mar 1 2016, In : Analytical chemistry. 88, 5, p. 2513-2514 2 p.

Research output: Contribution to journalEditorial

2019

Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures

Neumann, E. K., Do, T. D., Comi, T. J. & Sweedler, J. V., Jul 8 2019, In : Angewandte Chemie - International Edition. 58, 28, p. 9348-9364 17 p.

Research output: Contribution to journalReview article

2010

Circadian integration of glutamatergic signals by little SAAS in novel suprachiasmatic circuits

Atkins, N., Mitchell, J. W., Romanova, E. V., Morgan, D. J., Cominski, T. P., Ecker, J. L., Pintar, J. E., Sweedler, J. V. & Gillette, M. U., 2010, In : PloS one. 5, 9, p. 1-13 13 p., e12612.

Research output: Contribution to journalArticle

2012

The Hypothalamic-Neurohypophyseal System: From Genome to Physiology

Murphy, D., Konopacka, A., Hindmarch, C., Paton, J. F. R., Sweedler, J. V., Gillette, M. U., Ueta, Y., Grinevich, V., Lozic, M. & Japundzic-Zigon, N., Apr 1 2012, In : Journal of Neuroendocrinology. 24, 4, p. 539-553 15 p.

Research output: Contribution to journalReview article

2013

Details matter, and so do statistics

Sweedler, J. V., Jun 4 2013, In : Analytical chemistry. 85, 11, 1 p.

Research output: Contribution to journalEditorial

2016

Aplysia locomotion: Network and behavioral actions of GdFFD, a D-amino acid-containing neuropeptide

Yang, C. Y., Yu, K., Wang, Y., Chen, S. A., Liu, D. D., Wang, Z. Y., Su, Y. N., Yang, S. Z., Chen, T. T., Livnat, I., Vilim, F. S., Cropper, E. C., Weiss, K. R., Sweedler, J. V. & Jing, J., Jan 1 2016, In : PloS one. 11, 1, e0147335.

Research output: Contribution to journalArticle

2014

The analytical chemistry advisory boards

Sweedler, J. V., Jul 1 2014, In : Analytical chemistry. 86, 13, 1 p.

Research output: Contribution to journalEditorial

2016

Analytical chemistry and our national science initiatives

Sweedler, J. V., Jul 5 2016, In : Analytical chemistry. 88, 13, 1 p.

Research output: Contribution to journalEditorial

2018

Neuropeptidomics of the Rat Habenular Nuclei

Yang, N., Anapindi, K. D. B., Rubakhin, S. S., Wei, P., Yu, Q., Li, L., Kenny, P. J. & Sweedler, J. V., Apr 6 2018, In : Journal of Proteome Research. 17, 4, p. 1463-1473 11 p.

Research output: Contribution to journalArticle

2015

Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways

Cho, K., Evans, B. S., Wood, B. M. K., Kumar, R., Erb, T. J., Warlick, B. P., Gerlt, J. A. & Sweedler, J. V., Jun 1 2015, In : Metabolomics. 11, 3, p. 503-517 15 p.

Research output: Contribution to journalArticle

2010

Single-Cell Mass Spectrometry

Knolhoff, A. M., Rubakhin, S. & Sweedler, J. V., Mar 19 2010, Chemical Cytometry: Ultrasensitive Analysis of Single Cells. Wiley-VCH, p. 197-218 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

A unique combination of micronutrients rejuvenates cognitive performance in aged mice

Perez, S. D., Du, K., Rendeiro, C., Wang, L., Wu, Q., Rubakhin, S. S., Vazhappilly, R., Baxter, J. H., Sweedler, J. V. & Rhodes, J. S., Mar 1 2017, In : Behavioural Brain Research. 320, p. 97-112 16 p.

Research output: Contribution to journalArticle

Mass spectrometry imaging of complex microbial communities

Dunham, S. J. B., Ellis, J. F., Li, B. & Sweedler, J. V., Jan 1 2017, In : Accounts of chemical research. 50, 1, p. 96-104 9 p.

Research output: Contribution to journalArticle

2015

Multimodal chemical imaging of molecular messengers in emerging Pseudomonas aeruginosa bacterial communities

Baig, N. F., Dunham, S. J. B., Morales-Soto, N., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 7 2015, In : Analyst. 140, 19, p. 6544-6552 9 p.

Research output: Contribution to journalArticle

2010

Mass spectrometry imaging using the stretched sample approach

Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., Dec 1 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 465-479 15 p. (Methods in Molecular Biology; vol. 656).

Research output: Chapter in Book/Report/Conference proceedingChapter