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2011

Model of ion intensity from tandem mass spectra for improved peptide identification and simulation

Fazal, Z., Southey, B. R., Sadeque, A., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 994-996 3 p. 6112534. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Peptides
Ions
Mass spectrometry
Tandem Mass Spectrometry
Protons

Metabolic differentiation of neuronal phenotypes by single-cell capillary electrophoresis-electrospray ionization-mass spectrometry

Nemes, P., Knolhoff, A. M., Rubakhin, S. & Sweedler, J. V., Sep 1 2011, In : Analytical chemistry. 83, 17, p. 6810-6817 8 p.

Research output: Contribution to journalArticle

Capillary electrophoresis
Electrospray ionization
Neurons
Mass spectrometry
Neurology
2019

Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens

Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A. & Rodriguez-Zas, S. L., Dec 1 2019, In : Molecular Neurobiology. 56, 12, p. 7929-7949 21 p.

Research output: Contribution to journalArticle

Trigeminal Nuclei
Trigeminal Ganglion
Hyperalgesia
Nucleus Accumbens
Circadian Rhythm

Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel

Alim, F. Z. D., Romanova, E. V., Tay, Y. L., Rahman, A. Y. B. A., Chan, K. G., Hong, K. W., Rogers, M., Southey, B. R., Greenwood, M. P., Mecawi, A. S., Mustafa, M. R., Mahy, N., Campbell, C., Antunes-Rodrigues, J., Sweedler, J. V., Murphy, D. & Hindmarch, C. C. T., Jun 2019, In : PloS one. 14, 6, e0216679.

Research output: Contribution to journalArticle

Open Access
Camelus
Arginine Vasopressin
Camelus dromedarius
Neuropeptides
arginine vasopressin
2015

The Analytical Chemistry Virtual Issue Featuring our Advisory Boards

Sweedler, J. V., Sep 15 2015, In : Analytical chemistry. 87, 18, 1 p.

Research output: Contribution to journalEditorial

Chemical analysis
2017

Chiral Measurement of Aspartate and Glutamate in Single Neurons by Large-Volume Sample Stacking Capillary Electrophoresis

Patel, A. V., Kawai, T., Wang, L., Rubakhin, S. & Sweedler, J. V., Nov 21 2017, In : Analytical chemistry. 89, 22, p. 12375-12382 8 p.

Research output: Contribution to journalArticle

Capillary electrophoresis
Aspartic Acid
Neurons
Glutamic Acid
Neurology
2010

Methodologies for metabolomics: Experimental strategies and techniques

Lutz, N. W., Sweedler, J. V. & Wevers, R. A., Jan 1 2010, Cambridge University Press. 627 p.

Research output: Book/ReportBook

Metabolomics
Metabolites
Physiological Phenomena
Pathologic Processes
Metabolic Networks and Pathways
2011

Mice deficient in endothelin-converting enzyme-2 exhibit abnormal responses to morphine and altered peptide levels in the spinal cord

Miller, L. K., Hou, X., Rodriguiz, R. M., Gagnidze, K., Sweedler, J. V., Wetsel, W. C. & Devi, L. A., Dec 1 2011, In : Journal of Neurochemistry. 119, 5, p. 1074-1085 12 p.

Research output: Contribution to journalArticle

Endothelins
Morphine
Spinal Cord
Peptides
Enzymes
2018

Science Research - Looking in the Mirror

Sweedler, J. V., Nov 6 2018, In : Analytical chemistry. 90, 21, p. 12323-12324 2 p.

Research output: Contribution to journalEditorial

Mirrors
2017
Metabolites
Ionization
Dopamine
Desorption
Brain
2016

Our evolving editorial team

Sweedler, J. V., Sep 6 2016, In : Analytical chemistry. 88, 17, 1 p.

Research output: Contribution to journalEditorial

2018

Disruption of microglia histone acetylation and protein pathways in mice exhibiting inflammation-associated depression-like symptoms

Rodriguez-Zas, S. L., Wu, C., Southey, B. R., O'Connor, J. C., Nixon, S. E., Garcia, R., Zavala, C., Lawson, M., McCusker, R. H., Romanova, E. V., Sweedler, J. V., Kelley, K. W. & Dantzer, R., Nov 2018, In : Psychoneuroendocrinology. 97, p. 47-58 12 p.

Research output: Contribution to journalArticle

Microglia
Acetylation
Histones
Depression
Inflammation
2012

Relative quantitation of neuropeptides over a thousand-fold concentration range

Hou, X., Xie, F. & Sweedler, J. V., Dec 1 2012, In : Journal of the American Society for Mass Spectrometry. 23, 12, p. 2083-2093 11 p.

Research output: Contribution to journalArticle

Neuropeptides
Mass spectrometry
Mass Spectrometry
Peptides
Electrospray ionization
2016

A one-step matrix application method for MALDI mass spectrometry imaging of bacterial colony biofilms

Li, B., Comi, T. J., Si, T., Dunham, S. J. B. & Sweedler, J. V., Nov 1 2016, In : Journal of Mass Spectrometry. 51, 11, p. 1030-1035 6 p.

Research output: Contribution to journalArticle

Biofilms
Agar
Mass spectrometry
Imaging techniques
Ionization

The Analytical Chemistry Advisory Boards

Sweedler, J. V., Aug 2 2016, In : Analytical chemistry. 88, 15, 1 p.

Research output: Contribution to journalEditorial

Chemical analysis
2017

From the Great to the Scam, Carefully Select Your Scientific Conferences

Sweedler, J. V., Sep 5 2017, In : Analytical chemistry. 89, 17, 1 p.

Research output: Contribution to journalEditorial

2011

The modified-bead stretched sample method: Development and application to MALDI-MS imaging of protein localization in the spinal cord

Tucker, K. R., Serebryannyy, L. A., Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., May 9 2011, In : Chemical Science. 2, 4, p. 785-795 11 p.

Research output: Contribution to journalArticle

Ionization
Mass spectrometry
Desorption
Imaging techniques
Peptides
2016

Aplysia locomotion: Network and behavioral actions of GdFFD, a D-amino acid-containing neuropeptide

Yang, C. Y., Yu, K., Wang, Y., Chen, S. A., Liu, D. D., Wang, Z. Y., Su, Y. N., Yang, S. Z., Chen, T. T., Livnat, I., Vilim, F. S., Cropper, E. C., Weiss, K. R., Sweedler, J. V. & Jing, J., Jan 1 2016, In : PloS one. 11, 1, e0147335.

Research output: Contribution to journalArticle

Aplysia
neuropeptides
Locomotion
Neuropeptides
locomotion
2010

Synthesis, accumulation, and release of d-aspartate in the Aplysia californica CNS

Scanlan, C., Shi, T., Hatcher, N. G., Rubakhin, S. & Sweedler, J. V., Dec 1 2010, In : Journal of Neurochemistry. 115, 5, p. 1234-1244 11 p.

Research output: Contribution to journalArticle

Aplysia
Aspartic Acid
Ganglia
Neurons
Tissue
2012

Urotensin II in Invertebrates: From Structure to Function in Aplysia californica

Romanova, E. V., Sasaki, K., Alexeeva, V., Vilim, F. S., Jing, J., Richmond, T. A., Weiss, K. R. & Sweedler, J. V., Nov 8 2012, In : PloS one. 7, 11, e48764.

Research output: Contribution to journalArticle

Aplysia
Invertebrates
invertebrates
neuropeptides
vertebrates
2011

A novel pyridoxal 5'-phosphate-dependent amino acid racemase in the aplysia californica central nervous system

Wang, L., Ota, N., Romanova, E. V. & Sweedler, J. V., Apr 15 2011, In : Journal of Biological Chemistry. 286, 15, p. 13765-13774 10 p.

Research output: Contribution to journalArticle

aspartate racemase
Amino Acid Isomerases
D-Aspartic Acid
Aplysia
Pyridoxal Phosphate
2010

Fishing for the hidden peptidome in health and disease (Drug Abuse)

Fricker, L. D. & Sweedler, J. V., Dec 1 2010, In : AAPS Journal. 12, 4, p. 679-682 4 p.

Research output: Contribution to journalReview article

Substance-Related Disorders
Health
Proteins
Peptides
Peptide Receptors
2018

Peptide identifications and false discovery rates using different mass spectrometry platforms

Anapindi, K. D. B., Romanova, E. V., Southey, B. R. & Sweedler, J. V., May 15 2018, In : Talanta. 182, p. 456-463 8 p.

Research output: Contribution to journalArticle

Mass spectrometry
Mass Spectrometry
Peptides
Neuropeptides
Search Engine
2016

Identification of prohormones and pituitary neuropeptides in the African cichlid, Astatotilapia burtoni

Hu, C. K., Southey, B. R., Romanova, E. V., Maruska, K. P., Sweedler, J. V. & Fernald, R. D., Aug 19 2016, In : BMC genomics. 17, 1, 660.

Research output: Contribution to journalArticle

Cichlids
Neuropeptides
Genome
Peptide Hormones
Fishes
2012

Comparative peptidomics analysis of neural adaptations in rats repeatedly exposed to amphetamine

Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Nov 1 2012, In : Journal of Neurochemistry. 123, 2, p. 276-287 12 p.

Research output: Contribution to journalArticle

Amphetamine
Rats
Peptides
Mass spectrometry
Liquid chromatography
2011

Integration of sequence and functional information to identify and annotate neuropeptides in the pig genome

Porter, K. I., Southey, B. R., Akhtar, M. N., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 988-990 3 p. 6112532. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Neuropeptides
Swine
Genes
Genome
Proprotein Convertases
2014

Chemistry and the BRAIN initiative

Andrews, A. M., Schepartz, A., Sweedler, J. V. & Weiss, P. S., Jan 8 2014, In : Journal of the American Chemical Society. 136, 1, p. 1-2 2 p.

Research output: Contribution to journalEditorial

Brain Chemistry
Neurosciences
Brain
2019

The Periodic Table of Elements at 150

Sweedler, J. V., May 7 2019, In : Analytical chemistry. 91, 9, 1 p.

Research output: Contribution to journalEditorial

Open Access
2016

Choosing an Important Project: Take Two

Sweedler, J. V., Oct 4 2016, In : Analytical chemistry. 88, 19, 1 p.

Research output: Contribution to journalEditorial

2012

Mechanical tension modulates local and global vesicle dynamics in neurons

Ahmed, W. W., Li, T. C., Rubakhin, S., Chiba, A., Sweedler, J. V. & Saif, M. T. A., Jun 1 2012, In : Cellular and Molecular Bioengineering. 5, 2, p. 155-164 10 p.

Research output: Contribution to journalArticle

Vesicles
Aplysia
Drosophila
Neurons
Synaptic Vesicles
2019

Is the Power List a Representative List?

Sweedler, J. V., Dec 3 2019, In : Analytical chemistry. 91, 23, 1 p.

Research output: Contribution to journalEditorial

Open Access
2012

Don't grow your article too long: We do have length guidelines

Sweedler, J. V., Jul 3 2012, In : Analytical chemistry. 84, 13, 1 p.

Research output: Contribution to journalEditorial

2017

Microscale transport physics during atomic force microscopy mass spectrometry and improved sampling efficiency

Moon, H., Comi, T. J., Dunham, S. J. B., Kwon, B., Sweedler, J. V. & King, W. P., Jul 26 2017, TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems. Institute of Electrical and Electronics Engineers Inc., p. 24-27 4 p. 7993978. (TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

microbalances
Mass spectrometry
Atomic force microscopy
mass spectroscopy
Physics
2018

Exploring Exercise- and Context-Induced Peptide Changes in Mice by Quantitative Mass Spectrometry

Dowd, S. E., Mustroph, M. L., Romanova, E. V., Southey, B. R., Pinardo, H., Rhodes, J. S. & Sweedler, J. V., Oct 24 2018, In : ACS Omega. 3, 10, p. 13817-13827 11 p.

Research output: Contribution to journalArticle

Cocaine
Peptides
Mass spectrometry
Wheels
Animals

The ACS Measurement Journals, the Analytical Division, and Pittcon 2018: A Busy Four Days

Sweedler, J. V., Feb 20 2018, In : Analytical chemistry. 90, 4, 1 p.

Research output: Contribution to journalEditorial

2011

Stretched tissue mounting for MALDI mass spectrometry imaging

Tucker, K. R., Lanni, E. J., Serebryannyy, L. A., Rubakhin, S. & Sweedler, J. V., Dec 1 2011, In : Analytical chemistry. 83, 23, p. 9181-9185 5 p.

Research output: Contribution to journalArticle

Mountings
Ionization
Mass spectrometry
Desorption
Tissue
2015

Analytical chemistry is thriving in Thailand

Sweedler, J. V., May 5 2015, In : Analytical chemistry. 87, 9, 1 p.

Research output: Contribution to journalEditorial

Chemical analysis
2012

Serotonin of mast cell origin contributes to hippocampal function

Nautiyal, K. M., Dailey, C. A., Jahn, J. L., Rodriquez, E., Son, N. H., Sweedler, J. V. & Silver, R., Aug 1 2012, In : European Journal of Neuroscience. 36, 3, p. 2347-2359 13 p.

Research output: Contribution to journalArticle

Mast Cells
Serotonin
Neurogenesis
Hippocampus
Fluoxetine
2010

Feedforward compensation mediated by the central and peripheral actions of a single neuropeptide discovered using representational difference analysis

Jing, J., Sweedler, J. V., Cropper, E. C., Alexeeva, V., Park, J. H., Romanova, E. V., Xie, F., Dembrow, N. C., Ludwar, B. C., Weiss, K. R. & Vilim, F. S., Dec 8 2010, In : Journal of Neuroscience. 30, 49, p. 16545-16558 14 p.

Research output: Contribution to journalArticle

Neuropeptides
Cheek
Interneurons
Peptides
Aplysia
2017

Deterministic Integration of Biological and Soft Materials onto 3D Microscale Cellular Frameworks

McCracken, J. M., Xu, S., Badea, A., Jang, K. I., Yan, Z., Wetzel, D. J., Nan, K., Lin, Q., Han, M., Anderson, M. A., Lee, J. W., Wei, Z., Pharr, M., Wang, R., Su, J., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A. & Nuzzo, R. G., Sep 2017, In : Advanced Biosystems. 1, 9, 1700068.

Research output: Contribution to journalArticle

Open Access
Semiconductors
Spinal Ganglia
Silicon
Cues
Cell Culture Techniques
2018

A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms

Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., King, T. L., Amaya, K. R., Arnett, C. M. & Sweedler, J. V., Jun 5 2018, In : Analytical chemistry. 90, 11, p. 6725-6734 10 p.

Research output: Contribution to journalArticle

Biofilms
Imaging techniques
Mass spectrometry
Corrosion
Substrates
2010

Base-induced delignification of miscanthus x giganteus studied by three-dimensional confocal raman imaging

Chu, L. Q., Masyuko, R., Sweedler, J. V. & Bohn, P. W., Jul 1 2010, In : Bioresource Technology. 101, 13, p. 4919-4925 7 p.

Research output: Contribution to journalArticle

Delignification
Lignin
lignin
Cellulose
Cells
2012

A hyphenated optical trap capillary electrophoresis laser induced native fluorescence system for single-cell chemical analysis

Cecala, C., Rubakhin, S. S., Mitchell, J. W., Gillette, M. U. & Sweedler, J. V., Jul 7 2012, In : Analyst. 137, 13, p. 2965-2972 8 p.

Research output: Contribution to journalReview article

Optical Tweezers
Single-Cell Analysis
Capillary electrophoresis
Capillary Electrophoresis
chemical analysis

Glial D-serine gates NMDA receptors at excitatory synapses in prefrontal cortex

Fossat, P., Turpin, F. R., Sacchi, S., Dulong, J., Shi, T., Rivet, J. M., Sweedler, J. V., Pollegioni, L., Millan, M. J., Oliet, S. H. R. & Mothet, J. P., Mar 1 2012, In : Cerebral Cortex. 22, 3, p. 595-606 12 p.

Research output: Contribution to journalArticle

Prefrontal Cortex
N-Methyl-D-Aspartate Receptors
Neuroglia
Synapses
Serine
2018

Multimodal Chemical Analysis of the Brain by High Mass Resolution Mass Spectrometry and Infrared Spectroscopic Imaging

Neumann, E. K., Comi, T. J., Spegazzini, N., Mitchell, J. W., Rubakhin, S. S., Gillette, M. U., Bhargava, R. & Sweedler, J. V., Oct 2 2018, In : Analytical chemistry. 90, 19, p. 11572-11580 9 p.

Research output: Contribution to journalArticle

Mass spectrometry
Brain
Infrared radiation
Imaging techniques
Chemical analysis
2011

Neuropeptidomics: Mass spectrometry-based qualitative and quantitative analysis

Yin, P., Hou, X., Romanova, E. V. & Sweedler, J. V., Oct 24 2011, Neuropeptides: Methods and Protocols. Merighi, A. (ed.). p. 223-236 14 p. (Methods in Molecular Biology; vol. 789).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuropeptides
Mass Spectrometry
Liquid Chromatography
Peptides
Protein Precursors
2012

Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons

Wang, T. A., Yu, Y. V., Govindaiah, G., Ye, X., Artinian, L., Coleman, T. P., Sweedler, J. V., Cox, C. L. & Gillette, M. U., Aug 17 2012, In : Science. 337, 6096, p. 839-842 4 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Circadian Rhythm
Neurons
Circadian Clocks
Potassium Channels
2010

Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry

Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. U., Sweedler, J. V. & Kelleher, N. L., Feb 1 2010, In : Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.

Research output: Contribution to journalArticle

Circadian Clocks
Suprachiasmatic Nucleus
Tandem Mass Spectrometry
Mass spectrometry
Rats
2012

Now it is a highlight, not an acceleration

Sweedler, J. V., Sep 4 2012, In : Analytical chemistry. 84, 17, 1 p.

Research output: Contribution to journalEditorial

Peptidomic analyses of mouse astrocytic cell lines and rat primary cultured astrocytes

Yin, P., Knolhoff, A. M., Rosenberg, H. J., Millet, L. J., Gillette, M. U. & Sweedler, J. V., Aug 3 2012, In : Journal of Proteome Research. 11, 8, p. 3965-3973 9 p.

Research output: Contribution to journalArticle

Astrocytes
Rats
Cells
Cell Line
Peptides