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Author

  • Joseph Maria Kumar Irudayaraj
2016

Optogenetic regulation of site-specific subtelomeric DNA-methylation

Choudhury, S. R., Cui, Y., Narayanan, A., Gilley, D. P., Huda, N., Lo, C. L., Zhou, F. C., Yernool, D. & Irudayaraj, J., Jan 1 2016, In : Oncotarget. 7, 31, p. 50380-50391 12 p.

Research output: Contribution to journalArticle

2014

Nano/micro and spectroscopic approaches to food pathogen detection

Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In : Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

Research output: Contribution to journalReview article

2013

Lateral-flow enzyme immunoconcentration for rapid detection of Listeria monocytogenes

Cho, I. H. & Irudayaraj, J., Apr 1 2013, In : Analytical and bioanalytical chemistry. 405, 10, p. 3313-3319 7 p.

Research output: Contribution to journalArticle

2011

DNA-gold nanoparticle reversible networks grown on cell surface marker sites: Application in diagnostics

Lee, K., Drachev, V. P. & Irudayaraj, J., Mar 22 2011, In : ACS Nano. 5, 3, p. 2109-2117 9 p.

Research output: Contribution to journalArticle

2019

Epigenetic biomarker screening by FLIM-FRET for combination therapy in ER+ breast cancer

Liu, W., Cui, Y., Ren, W. & Irudayaraj, J., Jan 30 2019, In : Clinical epigenetics. 11, 1, 16.

Research output: Contribution to journalArticle

2013

Surface-enhanced Raman spectroscopy applied to food safety

Craig, A. P., Franca, A. S. & Irudayaraj, J., Feb 1 2013, In : Annual Review of Food Science and Technology. 4, 1, p. 369-380 12 p.

Research output: Contribution to journalArticle

2015

Functionalized gold nanoparticles for the detection of nitrates in water

Mura, S., Greppi, G., Roggero, P. P., Musu, E., Pittalis, D., Carletti, A., Ghiglieri, G. & Irudayaraj, J., Jan 1 2015, In : International Journal of Environmental Science and Technology. 12, 3, p. 1021-1028 8 p.

Research output: Contribution to journalArticle

Enhanced multi-photon emission from single NV center coupled to graphene by laser-shaping

Liu, J., Hu, Y., Kumar, P., Shalaginov, M. Y., Lagutchev, A. S., Shalaev, V. M., Cheng, G. J. & Irudayaraj, J. M. K., May 4 2015, CLEO: QELS - Fundamental Science, CLEO_QELS 2015. Optical Society of America (OSA), p. 1551p (CLEO: QELS - Fundamental Science, CLEO_QELS 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2013

A titanium nitride based metamaterial for applications in the visible

Naik, G. V., Saha, B., Liu, J., Saber, S. M., Stach, E., Joseph Irudayaraj, M. K., Sands, T. D., Shalaev, V. M. & Boltasseva, A., Nov 21 2013, CLEO: QELS_Fundamental Science, CLEO:QELS FS 2013. (CLEO: QELS_Fundamental Science, CLEO:QELS FS 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Ultrasound beam steering of oxygen nanobubbles for enhanced bladder cancer therapy

Bhandari, P., Novikova, G., Goergen, C. J. & Irudayaraj, J., Dec 1 2018, In : Scientific reports. 8, 1, 3112.

Research output: Contribution to journalArticle

2019

Epigenetic Process Monitoring in Live Cultures with Peptide Biosensors

Damayanti, N. P., Buno, K., Voytik Harbin, S. L. & Irudayaraj, J. M. K., Mar 22 2019, In : ACS Sensors. 4, 3, p. 562-565 4 p.

Research output: Contribution to journalArticle

2013

New approaches in microbial pathogen detection

Kahyaoglu, L. N. & Irudayaraj, J., Jul 1 2013, Advances in Microbial Food Safety. Elsevier Ltd, Vol. 1. p. 202-226 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Decitabine nanoconjugate sensitizes human glioblastoma cells to temozolomide

Cui, Y., Naz, A., Thompson, D. H. & Irudayaraj, J., Apr 6 2015, In : Molecular pharmaceutics. 12, 4, p. 1279-1288 10 p.

Research output: Contribution to journalArticle

Single-Cell Quantification of Cytosine Modifications by Hyperspectral Dark-Field Imaging

Wang, X., Cui, Y. & Irudayaraj, J., Oct 27 2015, In : ACS Nano. 9, 12, p. 11924-11932 9 p.

Research output: Contribution to journalArticle

Enhancement of single-photon emission from nitrogen-vacancy centers with TiN/(Al,Sc)N hyperbolic metamaterial

Shalaginov, M. Y., Vorobyov, V. V., Liu, J., Ferrera, M., Akimov, A. V., Lagutchev, A., Smolyaninov, A. N., Klimov, V. V., Irudayaraj, J., Kildishev, A. V., Boltasseva, A. & Shalaev, V. M., Jan 1 2015, In : Laser and Photonics Reviews. 9, 1, p. 120-127 8 p.

Research output: Contribution to journalArticle

2014

Quantification of 5-methylcytosine, 5-hydroxymethylcytosine and 5-carboxylcytosine from the blood of cancer patients by an enzyme-based immunoassay

Chowdhury, B., Cho, I. H., Hahn, N. & Irudayaraj, J., Dec 10 2014, In : Analytica Chimica Acta. 852, p. 212-217 6 p.

Research output: Contribution to journalArticle

2011

Fluorescent Ag clusters via a protein-directed approach as a Hg(II) ion sensor

Guo, C. & Irudayaraj, J., Apr 15 2011, In : Analytical chemistry. 83, 8, p. 2883-2889 7 p.

Research output: Contribution to journalArticle

2015

Membrane filter-assisted surface enhanced Raman spectroscopy for the rapid detection of E. coli O157: H7 in ground beef

Cho, I. H., Bhandari, P., Patel, P. & Irudayaraj, J., Feb 15 2015, In : Biosensors and Bioelectronics. 64, p. 171-176 6 p.

Research output: Contribution to journalArticle

2013

Broadband enhancement of spontaneous emission from nitrogen-vacancy centers in nanodiamonds by hyperbolic metamaterials

Shalaginov, M. Y., Ishii, S., Liu, J., Liu, J., Irudayaraj, J., Lagutchev, A., Kildishev, A. V. & Shalaev, V. M., Apr 29 2013, In : Applied Physics Letters. 102, 17, 173114.

Research output: Contribution to journalArticle

2016

Optical Clearing Delivers Ultrasensitive Hyperspectral Dark-Field Imaging for Single-Cell Evaluation

Cui, Y., Wang, X., Ren, W., Liu, J. & Irudayaraj, J., Mar 22 2016, In : ACS Nano. 10, 3, p. 3132-3143 12 p.

Research output: Contribution to journalArticle

2015

Enhanced multi-photon emission from single NV center coupled to graphene by laser-shaping

Liu, J., Hu, Y., Kumar, P., Shalaginov, M. Y., Lagutchev, A. S., Shalaev, V. M., Cheng, G. J. & Irudayaraj, J. M. K., Aug 10 2015, 2015 Conference on Lasers and Electro-Optics, CLEO 2015. Institute of Electrical and Electronics Engineers Inc., 7183374. (Conference on Lasers and Electro-Optics Europe - Technical Digest; vol. 2015-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2013

In-situ immuno-gold nanoparticle network ELISA biosensors for pathogen detection

Cho, I. H. & Irudayaraj, J., Jun 3 2013, In : International Journal of Food Microbiology. 164, 1, p. 70-75 6 p.

Research output: Contribution to journalArticle

2018

Current technologies of electrochemical immunosensors: Perspective on signal amplification

Cho, I. H., Lee, J., Kim, J., Kang, M. S., Paik, J. K., Ku, S., Cho, H. M., Irudayaraj, J. & Kim, D. H., Jan 12 2018, In : Sensors (Switzerland). 18, 1, 207.

Research output: Contribution to journalReview article

2011

Quantification of receptor targeting aptamer binding characteristics using single-molecule spectroscopy

Book, B., Chen, J. & Irudayaraj, J., May 1 2011, In : Biotechnology and bioengineering. 108, 5, p. 1222-1227 6 p.

Research output: Contribution to journalLetter

Raman chemical imaging of chromate reduction sites in a single bacterium using intracellularly grown gold nanoislands

Ravindranath, S. P., Henne, K. L., Thompson, D. K. & Irudayaraj, J., Jun 28 2011, In : ACS Nano. 5, 6, p. 4729-4736 8 p.

Research output: Contribution to journalArticle

2015

Single-cell screening and quantification of transcripts in cancer tissues by second-harmonic generation microscopy

Liu, J., Damayanti, N. P., Cho, I. H., Polar, Y., Badve, S. & Irudayaraj, J. M. K., Sep 1 2015, In : Journal of biomedical optics. 20, 9, 096016.

Research output: Contribution to journalArticle

2016

Mitochondrial Dysfunction, Disruption of F-Actin Polymerization, and Transcriptomic Alterations in Zebrafish Larvae Exposed to Trichloroethylene

Wirbisky, S. E., Damayanti, N. P., Mahapatra, C. T., Sepúlveda, M. S., Irudayaraj, J. & Freeman, J. L., Feb 15 2016, In : Chemical Research in Toxicology. 29, 2, p. 169-179 11 p.

Research output: Contribution to journalArticle

2013

Probing site-exclusive binding of aqueous QDs and their organelle-dependent dynamics in live cells by single molecule spectroscopy

Dong, C., Chowdhury, B. & Irudayaraj, J., May 21 2013, In : Analyst. 138, 10, p. 2871-2876 6 p.

Research output: Contribution to journalArticle

2019

Bioinspired glycosaminoglycan hydrogels via click chemistry for 3D dynamic cell encapsulation

Kuang, L., Damayanti, N. P., Jiang, C., Fei, X., Liu, W., Narayanan, N., Irudayaraj, J., Campanella, O. & Deng, M., Feb 5 2019, In : Journal of Applied Polymer Science. 136, 5, 47212.

Research output: Contribution to journalArticle

2012

Graphene for biosensing applications

Jalilian, R., Jauregui, L. A., Lee, K., Chen, Y. P. & Irudayaraj, J., Aug 31 2012, Biomedical Nanosensors. Pan Stanford Publishing Pte. Ltd., p. 153-186 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Plasmonic enhancement in lateral flow sensors for improved sensing of E. coli O157:H7

Ren, W., Ballou, D. R., FitzGerald, R. & Irudayaraj, J., Feb 1 2019, In : Biosensors and Bioelectronics. 126, p. 324-331 8 p.

Research output: Contribution to journalArticle

2014

Diversity of two forms of DNA methylation in the brain

Chen, Y., Damayanti, N. P., Irudayaraj, J., Dunn, K. & Zhou, F. C., 2014, In : Frontiers in Genetics. 5, MAR, Article 46.

Research output: Contribution to journalArticle

2010

Detection and differentiation of live and heat-treated Salmonella enterica serovars inoculated onto chicken breast using Fourier transform infrared (FT-IR) spectroscopy

Davis, R., Burgula, Y., Deering, A., Irudayaraj, J., Reuhs, B. L. & Mauer, L. J., Dec 1 2010, In : Journal of Applied Microbiology. 109, 6, p. 2019-2031 13 p.

Research output: Contribution to journalArticle

2013
2016

Epigenetic toxicity of trichloroethylene: A single-molecule perspective

Cui, Y., Choudhury, S. R. & Irudayaraj, J., 2016, In : Toxicology Research. 5, 2, p. 641-650 10 p.

Research output: Contribution to journalArticle

2013

Pattern recognition applied to spectroscopy: Conventional methods and future directions

Craig, A. P., Franca, A. S. & Irudayaraj, J., Mar 1 2013, Pattern Recognition: Practices, Perspectives and Challenges. Nova Science Publishers, Inc., p. 1-45 45 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2011

Separation and detection of multiple pathogens in a food matrix by magnetic SERS nanoprobes

Wang, Y., Ravindranath, S. & Irudayaraj, J., Jan 1 2011, In : Analytical and bioanalytical chemistry. 399, 3, p. 1271-1278 8 p.

Research output: Contribution to journalArticle

2010

Optical quantification of label-free DNA

Lee, K. & Irudayaraj, J., 2010, In : Optics InfoBase Conference Papers.

Research output: Contribution to journalConference article

2016

Kinase phosphorylation monitoring with i-motif DNA cross-linked SERS probes

Ren, W., Damayanti, N. P., Wang, X. & Irudayaraj, J. M. K., Jan 7 2016, In : Chemical Communications. 52, 2, p. 410-413 4 p.

Research output: Contribution to journalArticle

2015

Water flattens graphene wrinkles: Laser shock wrapping of graphene onto substrate-supported crystalline plasmonic nanoparticle arrays

Hu, Y., Lee, S., Kumar, P., Nian, Q., Wang, W., Irudayaraj, J. & Cheng, G. J., Dec 21 2015, In : Nanoscale. 7, 47, p. 19885-19893 9 p.

Research output: Contribution to journalArticle

Enhanced multiphoton emission from CdTe/ZnS quantum dots decorated on single-layer graphene

Liu, J., Kumar, P., Hu, Y., Cheng, G. J. & Irudayaraj, J., Mar 19 2015, In : Journal of Physical Chemistry C. 119, 11, p. 6331-6336 6 p.

Research output: Contribution to journalArticle

2012

Preface

Irudayaraj, J. M. K., Aug 31 2012, Biomedical Nanosensors. Pan Stanford Publishing Pte. Ltd.

Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

2015

Latest developments of nanotoxicology in plants

Mura, S., Greppi, G. & Irudayaraj, J., Jan 1 2015, Nanotechnology and Plant Sciences: Nanoparticles and Their Impact on Plants. Springer International Publishing, p. 125-151 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Fourier Transform Infrared (FT-IR) spectroscopy coupled with filtration and immunomagnetic separation for the detection of Escherichia coli O157:H7 in ground beef

Davis, R., Burgula, Y., Irudayaraj, J., Reuhs, B. L. & Mauer, L. J., Aug 24 2010, 2010 18th Biennial University/Government/Industry Micro-Nano Symposium, UGIM 2010 - Proceedings. 5508916. (Biennial University/Government/Industry Microelectronics Symposium - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

Cross-platform detection of epigenetic modifications from extracted chromatin in leucocytes from blood

Zhou, Z., Cho, II. H., Shan, Z. & Irudayaraj, J., Jun 1 2015, In : Analytical Chemistry Research. 4, p. 39-44 6 p.

Research output: Contribution to journalArticle

2016

Non-fluorescent quantification of single mRNA with transient absorption microscopy

Liu, J. & Irudayaraj, J. M. K., Dec 14 2016, In : Nanoscale. 8, 46, p. 19242-19248 7 p.

Research output: Contribution to journalArticle

CRISPR-dCas9 mediated TET1 targeting for selective DNA demethylation at BRCA1 promoter

Choudhury, S. R., Cui, Y., Lubecka, K., Stefanska, B. & Irudayaraj, J., 2016, In : Oncotarget. 7, 29, p. 46545-46556 12 p.

Research output: Contribution to journalArticle

2012
2011

Protein-directed reduction of graphene oxide and intracellular imaging

Guo, C., Book-Newell, B. & Irudayaraj, J., Dec 21 2011, In : Chemical Communications. 47, 47, p. 12658-12660 3 p.

Research output: Contribution to journalArticle

2016

Regulatory landscape and clinical implication of MBD3 in human malignant glioma

Cui, Y., Li, J., Weng, L., Wirbisky, S. E., Freeman, J. L., Liu, J., Liu, Q., Yuan, X. & Irudayaraj, J., 2016, In : Oncotarget. 7, 49, p. 81698-81714 17 p.

Research output: Contribution to journalArticle