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2013

Characterization of GdFFD, a D-amino acid-containing neuropeptide that functions as an extrinsic modulator of the Aplysia feeding circuit

Bai, L., Livnat, I., Romanova, E. V., Alexeeva, V., Yau, P. M., Vilim, F. S., Weiss, K. R., Jing, J. & Sweedler, J. V., Nov 15 2013, In : Journal of Biological Chemistry. 288, 46, p. 32837-32851 15 p.

Research output: Contribution to journalArticle

Aplysia
Neuropeptides
Modulators
Amino Acids
Peptides
2019

A rotifer-derived paralytic compound prevents transmission of schistosomiasis to a mammalian host

Gao, J., Yang, N., Lewis, F. A., Yau, P., Collins, J. J., Sweedler, J. V. & Newmark, P. A., Oct 17 2019, In : PLoS biology. 17, 10, e3000485.

Research output: Contribution to journalArticle

Open Access
schistosomiasis
Schistosoma
Schistosomiasis
Rotifera
Cercaria
2014

Understanding the impact of fractionation and dynamic exclusion on proteomics

Zavala, C., Nixon, S., Southey, B. R., Wu, C., Romanova, E. V., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 93-96 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fractionation
Proteomics
Proteins
Peptides
Databases

MALDI-guided SIMS: Multiscale imaging of metabolites in bacterial biofilms

Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Aerts, J. T., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 1 2014, In : Analytical chemistry. 86, 18, p. 9139-9145 7 p.

Research output: Contribution to journalArticle

Biofilms
Secondary ion mass spectrometry
Metabolites
Ionization
Desorption
2017

The Chemistry of Thought: The Role of the Measurement Sciences in Brain Research

Andrews, A. M., Bhargava, R., Kennedy, R., Li, L. & Sweedler, J. V., May 2 2017, In : Analytical chemistry. 89, 9, 1 p.

Research output: Contribution to journalEditorial

2018: The 90th Volume of Analytical Chemistry and Still Growing

Sweedler, J. V., Dec 5 2017, In : Analytical chemistry. 89, 23, 1 p.

Research output: Contribution to journalEditorial

Chemical analysis

The Analytical Chemistry Virtual Issue Featuring Our Advisory Boards

Sweedler, J. V., Jul 5 2017, In : Analytical chemistry. 89, 13, 1 p.

Research output: Contribution to journalEditorial

Chemical analysis
2012

1-methylthio-d-xylulose 5-phosphate methylsulfurylase: A novel route to 1-deoxy-d-xylulose 5-phosphate in Rhodospirillum rubrum

Warlick, B. P., Evans, B. S., Erb, T. J., Ramagopal, U. A., Sriram, J., Imker, H. J., Sauder, J. M., Bonanno, J. B., Burley, S. K., Tabita, F. R., Almo, S. C., Sweedler, J. S. & Gerlt, J. A., Oct 23 2012, In : Biochemistry. 51, 42, p. 8324-8326 3 p.

Research output: Contribution to journalArticle

Rhodospirillum rubrum
Salvaging
S-Adenosylmethionine
Biosynthesis
Terpenes
2019

Neuropeptidomics of the mammalian brain

Xie, F., Anapindi, K. D. B., Romanova, E. V. & Sweedler, J. V., Jan 1 2019, Neuromethods. Humana Press Inc., p. 161-177 17 p. (Neuromethods; vol. 146).

Research output: Chapter in Book/Report/Conference proceedingChapter

Brain
Peptides
Mass spectrometry
Mass Spectrometry
Liquid chromatography
2013

Quantitation of endogenous peptides using mass spectrometry based methods

Romanova, E. V., Dowd, S. E. & Sweedler, J. V., Oct 1 2013, In : Current Opinion in Chemical Biology. 17, 5, p. 801-808 8 p.

Research output: Contribution to journalReview article

Mass spectrometry
Mass Spectrometry
Peptides
Data Mining
Molecular interactions
2014

Patch clamp electrophysiology and capillary electrophoresis-mass spectrometry metabolomics for single cell characterization

Aerts, J. T., Louis, K. R., Crandall, S. R., Govindaiah, G., Cox, C. L. & Sweedler, J. V., Jan 1 2014, In : Analytical chemistry. 86, 6, p. 3203-3208 6 p.

Research output: Contribution to journalArticle

Electrophysiology
Capillary electrophoresis
Clamping devices
Neurons
Mass spectrometry
Chemical analysis
2012

Sampling techniques for single-cell electrophoresis

Cecala, C. & Sweedler, J. V., Jul 7 2012, In : Analyst. 137, 13, p. 2922-2929 8 p.

Research output: Contribution to journalReview article

Electrophoresis
electrokinesis
Sampling
detection method
Microfluidics
2017

Microscale transport physics during atomic force microscopy mass spectrometry and improved sampling efficiency

Moon, H., Comi, T. J., Dunham, S. J. B., Kwon, B., Sweedler, J. V. & King, W. P., Jul 26 2017, TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems. Institute of Electrical and Electronics Engineers Inc., p. 24-27 4 p. 7993978. (TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

microbalances
Mass spectrometry
Atomic force microscopy
mass spectroscopy
Physics
2016

Career Advice for Graduate Students and Postdoctoral Fellows

Sweedler, J. V., Mar 1 2016, In : Analytical chemistry. 88, 5, p. 2513-2514 2 p.

Research output: Contribution to journalEditorial

Students
2017
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Ionization
Mass spectrometry
Desorption
Mass Spectrometry
2010

Composite modulatory feedforward loop contributes to the establishment of a network state

Wu, J. S., Vilim, F. S., Hatcher, N. G., Due, M. R., Sweedler, J. V., Weiss, K. R. & Jing, J., Apr 1 2010, In : Journal of neurophysiology. 103, 4, p. 2174-2184 11 p.

Research output: Contribution to journalArticle

Interneurons
Central Pattern Generators
Aplysia
Peptides
Cheek
2017

The Analytical Chemistry Award Winners

Sweedler, J. V., Oct 3 2017, In : Analytical chemistry. 89, 19, 1 p.

Research output: Contribution to journalEditorial

Chemical analysis
2011
ethylenediamine
Neurons
Ionization
Mass spectrometry
Pyrrolidinones
2016

Safety: Declare the Hidden Risks and Hazards of Your Research

Sweedler, J. V., Jan 1 2016, In : Analytical chemistry. 88, 23, 1 p.

Research output: Contribution to journalEditorial

Hazards

Characterization of bacillus subtilis colony biofilms via mass spectrometry and fluorescence imaging

Si, T., Li, B., Zhang, K., Xu, Y., Zhao, H. & Sweedler, J. V., Jun 3 2016, In : Journal of Proteome Research. 15, 6, p. 1955-1962 8 p.

Research output: Contribution to journalArticle

Optical Imaging
Biofilms
Bacilli
Bacillus subtilis
Mass spectrometry
2012

Filling Royce's shoes

Sweedler, J., Jan 3 2012, In : Analytical chemistry. 84, 1, 1 p.

Research output: Contribution to journalEditorial

2017

Carrot solution culture bioproduction of uniformly labeled 13C-lutein and in vivo dosing in non-human primates

Smith, J. W., Rogers, R. B., Jeon, S., Rubakhin, S. S., Wang, L., Sweedler, J. V., Neuringer, M., Kuchan, M. J. & Erdman, J. W., Feb 1 2017, In : Experimental Biology and Medicine. 242, 3, p. 305-315 11 p.

Research output: Contribution to journalArticle

Lutein
Daucus carota
Primates
Macaca mulatta
Metabolism
2012

Professional Editors or Scientist Editors? Both perspectives have value.

Sweedler, J. V., Mar 6 2012, In : Analytical chemistry. 84, 5, 1 p.

Research output: Contribution to journalEditorial

Label-free quantitation of peptide release from neurons in a microfluidic device with mass spectrometry imaging

Zhong, M., Lee, C. Y., Croushore, C. A. & Sweedler, J. V., May 8 2012, In : Lab on a chip. 12, 11, p. 2037-2045 9 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
Peptides
Neurons
Mass spectrometry
2019

Avoiding a Retraction: Some Simple Guidelines on What NOT to Do

Sweedler, J. V., Aug 6 2019, In : Analytical chemistry. 91, 15, p. 9331-9332 2 p.

Research output: Contribution to journalEditorial

2018

Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock

Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. L., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.

Research output: Contribution to journalArticle

Circadian Clocks
Neuropeptides
Suprachiasmatic Nucleus
Clocks
Optics
2013

Discovery of new enzymes and metabolic pathways by using structure and genome context

Zhao, S., Kumar, R., Sakai, A., Vetting, M. W., Wood, B. M. K., Brown, S., Bonanno, J. B., Hillerich, B. S., Seidel, R. D., Babbitt, P. C., Almo, S. C., Sweedler, J. V., Gerlt, J. A., Cronan, J. E. & Jacobson, M. P., Sep 24 2013, In : Nature. 502, 7473, p. 698-702 5 p.

Research output: Contribution to journalArticle

Metabolic Networks and Pathways
Genome
Multigene Family
Substrate Specificity
Enzymes
2017

A unique combination of micronutrients rejuvenates cognitive performance in aged mice

Perez, S. D., Du, K., Rendeiro, C., Wang, L., Wu, Q., Rubakhin, S. S., Vazhappilly, R., Baxter, J. H., Sweedler, J. V. & Rhodes, J. S., Mar 1 2017, In : Behavioural Brain Research. 320, p. 97-112 16 p.

Research output: Contribution to journalArticle

Micronutrients
Diet
Mitochondrial DNA
Interleukin-10
Hippocampus
2018

Interrogation of spatial metabolome of Ginkgo biloba with high-resolution matrix-assisted laser desorption/ionization and laser desorption/ionization mass spectrometry imaging

Li, B., Neumann, E. K., Ge, J., Gao, W., Yang, H., Li, P. & Sweedler, J. V., Nov 2018, In : Plant Cell and Environment. 41, 11, p. 2693-2703 11 p.

Research output: Contribution to journalArticle

Ginkgo
Ginkgo biloba
metabolome
Metabolome
desorption
2017

Science Communication: A Science Not an Art

Sweedler, J. V., Mar 7 2017, In : Analytical chemistry. 89, 5, 1 p.

Research output: Contribution to journalEditorial

Communication

Use the Supporting Information, but Do Not Leave Critical Details out of the Main Manuscript

Sweedler, J. V., Nov 7 2017, In : Analytical chemistry. 89, 21, 1 p.

Research output: Contribution to journalEditorial

2012

Single-cell metabolomics: Changes in the metabolome of freshly isolated and cultured neurons

Nemes, P., Knolhoff, A. M., Rubakhin, S. S. & Sweedler, J. V., Oct 17 2012, In : ACS Chemical Neuroscience. 3, 10, p. 782-792 11 p.

Research output: Contribution to journalArticle

Metabolomics
Metabolome
Neurons
Glycerol
Metabolites
2018

Where Is the Data?

Sweedler, J. V., Aug 7 2018, In : Analytical chemistry. 90, 15, 1 p.

Research output: Contribution to journalEditorial

2010

Production of nitric oxide within the aplysia californica nervous system

Ye, X., Xie, F., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Mar 17 2010, In : ACS Chemical Neuroscience. 1, 3, p. 182-193 12 p.

Research output: Contribution to journalArticle

Aplysia
Neurology
Nervous System
Nitric Oxide
Fluorescence

Distinct mechanisms produce functionally complementary actions of neuropeptides that are structurally related but derived from different precursors

Vilim, F. S., Sasaki, K., Rybak, J., Alexeeva, V., Cropper, E. C., Jing, J., Orekhova, I. V., Brezina, V., Price, D., Romanova, E. V., Rubakhin, S. S., Hatcher, N., Sweedler, J. V. & Weiss, K. R., Jan 6 2010, In : Journal of Neuroscience. 30, 1, p. 131-147 17 p.

Research output: Contribution to journalArticle

FMRFamide
Neuropeptides
Sensory Receptor Cells
Aplysia
Muscles
2011

MALDI mass spectrometry imaging of neuronal cell cultures

Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., May 1 2011, In : Journal of the American Society for Mass Spectrometry. 22, 5, p. 828-836 9 p.

Research output: Contribution to journalArticle

Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Cell culture
Mass spectrometry
Aplysia
Mass Spectrometry
2016

Choosing an Important Project: The First Stage to Getting Research Published

Sweedler, J. V., Apr 5 2016, In : Analytical chemistry. 88, 7, 1 p.

Research output: Contribution to journalEditorial

2014

The Past, Present, and Future of Analytical Chemistry According to Chris Enke

Sweedler, J. V., Oct 7 2014, In : Analytical chemistry. 86, 19, 1 p.

Research output: Contribution to journalEditorial

Chemical analysis
2017

microMS: A Python Platform for Image-Guided Mass Spectrometry Profiling

Comi, T. J., Neumann, E. K., Do, T. D. & Sweedler, J. V., Sep 1 2017, In : Journal of the American Society for Mass Spectrometry. 28, 9, p. 1919-1928 10 p.

Research output: Contribution to journalArticle

Boidae
Mass spectrometry
Mass Spectrometry
Microscopy
Microscopic examination
2018

Who Are Your Coauthors? Make Sure to Follow Appropriate Practices

Sweedler, J. V., Mar 6 2018, In : Analytical chemistry. 90, 5, p. 2977-2978 2 p.

Research output: Contribution to journalEditorial

2012

Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons

Wang, T. A., Yu, Y. V., Govindaiah, G., Ye, X., Artinian, L., Coleman, T. P., Sweedler, J. V., Cox, C. L. & Gillette, M. U., Aug 17 2012, In : Science. 337, 6096, p. 839-842 4 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Circadian Rhythm
Neurons
Circadian Clocks
Potassium Channels
2015
Acetylcholine
Serotonin
Electrodes
Liquids
Neurotransmitter Agents
2012

Microfluidic device for the selective chemical stimulation of neurons and characterization of peptide release with mass spectrometry

Croushore, C. A., Supharoek, S. A., Lee, C. Y., Jakmunee, J. & Sweedler, J. V., Nov 6 2012, In : Analytical chemistry. 84, 21, p. 9446-9452 7 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Chemical Stimulation
Microfluidics
Neurons
Mass spectrometry
2015

Striving for Reproducible Science

Sweedler, J. V., Nov 17 2015, In : Analytical chemistry. 87, 23, p. 11603-11604 2 p.

Research output: Contribution to journalEditorial

2012

D-Aspartate acts as a signaling molecule in nervous and neuroendocrine systems

Ota, N., Shi, T. & Sweedler, J. V., Nov 1 2012, In : Amino Acids. 43, 5, p. 1873-1886 14 p.

Research output: Contribution to journalReview article

D-Aspartic Acid
Neurosecretory Systems
Nervous System
Molecules
Biosynthesis
2011

Profiling metabolites and peptides in single cells

Rubakhin, S. S., Romanova, E. V., Nemes, P. & Sweedler, J. V., Apr 2011, In : Nature Methods. 8, 4, p. S20-S29

Research output: Contribution to journalArticle

Metabolites
Cytology
Peptides
Stem cells
Chemical analysis
2016

Choosing an Important Project: Take Two

Sweedler, J. V., Oct 4 2016, In : Analytical chemistry. 88, 19, 1 p.

Research output: Contribution to journalEditorial

2011

Chronic morphine alters the presynaptic protein profile: Identification of novel molecular targets using proteomics and network analysis

Abul-Husn, N. S., Annangudi, S. P., Ma'ayan, A., Ramos-Ortolaza, D. L., Stockton, S. D., Gomes, I., Sweedler, J. V. & Devi, L. A., Oct 17 2011, In : PloS one. 6, 10, e25535.

Research output: Contribution to journalArticle

morphine
Electric network analysis
Proteomics
proteomics
Morphine
2010

Spatial correlation of confocal raman scattering and secondary ion mass spectrometric molecular images of lignocellulosic materials

Li, Z., Chu, L. Q., Sweedler, J. V. & Bohn, P. W., Apr 1 2010, In : Analytical chemistry. 82, 7, p. 2608-2611 4 p.

Research output: Contribution to journalArticle

Molecular mass
Secondary ion mass spectrometry
Raman scattering
Ions
Biofuels