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2018

X-ray transparent microfluidic platforms for membrane protein crystallization with microseeds

Schieferstein, J. M., Pawate, A. S., Varel, M. J., Guha, S., Astrauskaite, I., Gennis, R. B. & Kenis, P. J. A., Jan 1 2018, In : Lab on a chip. 18, 6, p. 944-954 11 p.

Research output: Contribution to journalArticle

Microfluidics
Crystallization
Membrane Proteins
X-Rays
Proteins

Ionophoric effects of the antitubercular drug bedaquiline

Hards, K., McMillan, D. G. G., Schurig-Briccio, L. A., Gennis, R. B., Lill, H., Bald, D. & Cook, G. M., Jul 10 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 28, p. 7326-7331 6 p.

Research output: Contribution to journalArticle

bedaquiline
Antitubercular Agents
Adenosine Triphosphate
Escherichia coli
Proton-Motive Force
2014

Kinetics and intermediates of the reaction of fully reduced escherichia coli bo 3 ubiquinol oxidase with O2

Szundi, I., Kittredge, C., Choi, S. K., McDonald, W., Ray, J., Gennis, R. B. & Einarsdóttir, Ó., Jan 1 2014, In : Biochemistry. 53, 33, p. 5393-5404 12 p.

Research output: Contribution to journalArticle

Escherichia coli
Heme
Kinetics
Cytochromes
Oxidation
2012

Dissection of hydrogen bond interaction network around an iron-sulfur cluster by site-specific isotope labeling of hyperthermophilic archaeal rieske-type ferredoxin

Iwasaki, T., Fukazawa, R., Miyajima-Nakano, Y., Baldansuren, A., Matsushita, S., Lin, M. T., Gennis, R. B., Hasegawa, K., Kumasaka, T. & Dikanov, S., Dec 5 2012, In : Journal of the American Chemical Society. 134, 48, p. 19731-19738 8 p.

Research output: Contribution to journalArticle

Isotope Labeling
Ferredoxins
Dissection
dissection
Sulfur
2011

Oriented immobilization and electron transfer to the cytochrome c oxidase

Nowak, C., Schach, D., Gebert, J., Grosserueschkamp, M., Gennis, R. B., Ferguson-Miller, S., Knoll, W., Walz, D. & Naumann, R. L. C., Jan 1 2011, In : Journal of Solid State Electrochemistry. 15, 1, p. 105-114 10 p.

Research output: Contribution to journalArticle

oxidase
cytochromes
Electron Transport Complex IV
immobilization
Chelating Agents
2014

The KC channel in the cbb3-type respiratory oxygen reductase from Rhodobacter capsulatus is required for both chemical and pumped protons

Yildiz, G. G., Gennis, R. B., Daldal, F. & Öztürk, M., 2014, In : Journal of bacteriology. 196, 10, p. 1825-1832 8 p.

Research output: Contribution to journalArticle

Rhodobacter capsulatus
Protons
Oxidoreductases
Oxygen
Heme
2010

Functional role of Thr-312 and Thr-315 in the proton-transfer pathway in ba 3 cytochrome c oxidase from thermus thermophilus

Smirnova, I., Reimann, J., Von Ballmoos, C., Chang, H. Y., Gennis, R. B., Fee, J. A., Brzezinski, P. & Ädelroth, P., Aug 24 2010, In : Biochemistry. 49, 33, p. 7033-7039 7 p.

Research output: Contribution to journalArticle

Thermus thermophilus
Proton transfer
Electron Transport Complex IV
Protons
Oxidoreductases
2011

2D-SEIRA spectroscopy to highlight conformational changes of the cytochrome c oxidase induced by direct electron transfer

Nowak, C., Laredo, T., Gebert, J., Lipkowski, J., Gennis, R. B., Ferguson-Miller, S., Knoll, W. & Naumann, R. L. C., Jun 1 2011, In : Metallomics. 3, 6, p. 619-627 9 p.

Research output: Contribution to journalArticle

Electron Transport Complex IV
Spectrum Analysis
Spectroscopy
Electrons
Biomimetics
2010

Intricate role of water in proton transport through cytochrome c oxidase

Lee, H. J., Svahn, E., Swanson, J. M. J., Lepp, H., Voth, G. A., Brzezinski, P. & Gennis, R. B., Nov 17 2010, In : Journal of the American Chemical Society. 132, 45, p. 16225-16239 15 p.

Research output: Contribution to journalArticle

Electron Transport Complex IV
cytochrome
Protons
mutation
Water
2012

Timing of electron and proton transfer in the ba3 cytochrome c oxidase from Thermus thermophilus

Von Ballmoos, C., Lachmann, P., Gennis, R. B., Ädelroth, P. & Brzezinski, P., Jun 5 2012, In : Biochemistry. 51, 22, p. 4507-4517 11 p.

Research output: Contribution to journalArticle

Thermus thermophilus
Proton transfer
Electron Transport Complex IV
Protons
Electrons
2013

Characterization of the Type III sulfide:quinone oxidoreductase from Caldivirga maquilingensis and its membrane binding

Lencina, A. M., Ding, Z., Schurig-Briccio, L. A. & Gennis, R. B., Mar 1 2013, In : Biochimica et Biophysica Acta - Bioenergetics. 1827, 3, p. 266-275 10 p.

Research output: Contribution to journalArticle

sulfide quinone reductase
Membranes
Sulfides
Enzymes
Electrons
2018

Unpaired Electron Spin Density Distribution across Reduced [2Fe-2S] Cluster Ligands by 13Cβ-Cysteine Labeling

Taguchi, A. T., Miyajima-Nakano, Y., Fukazawa, R., Lin, M. T., Baldansuren, A., Gennis, R. B., Hasegawa, K., Kumasaka, T., Dikanov, S. & Iwasaki, T., Jan 16 2018, In : Inorganic Chemistry. 57, 2, p. 741-746 6 p.

Research output: Contribution to journalArticle

cysteine
electron spin
Labeling
marking
Cysteine
2014

Proton pumping by an inactive structural variant of cytochrome c oxidase

Svahn, E., Faxén, K., Gennis, R. B. & Brzezinski, P., Nov 2014, In : Journal of Inorganic Biochemistry. 140, p. 6-11 6 p.

Research output: Contribution to journalArticle

Electron Transport Complex IV
Protons
Catalytic Domain
Paracoccus denitrificans
Proton transfer
2015

Escherichia coli Auxotroph Host Strains for Amino Acid-Selective Isotope Labeling of Recombinant Proteins

Lin, M. T., Fukazawa, R., Miyajima-Nakano, Y., Matsushita, S., Choi, S. K., Iwasaki, T. & Gennis, R. B., Jan 1 2015, Methods in Enzymology. Academic Press Inc., p. 45-66 22 p. (Methods in Enzymology; vol. 565).

Research output: Chapter in Book/Report/Conference proceedingChapter

Isotope Labeling
Recombinant Proteins
Isotopes
Labeling
Escherichia coli
2019

Active site rearrangement and structural divergence in prokaryotic respiratory oxidases

Safarian, S., Hahn, A., Mills, D. J., Radloff, M., Eisinger, M. L., Nikolaev, A., Meier-Credo, J., Melin, F., Miyoshi, H., Gennis, R. B., Sakamoto, J., Langer, J. D., Hellwig, P., Kühlbrandt, W. & Michel, H., Oct 4 2019, In : Science. 366, 6461, p. 100-104 5 p.

Research output: Contribution to journalArticle

Catalytic Domain
Oxidoreductases
Oxygen
Electron Transport Complex IV
Cytochromes
2010

Heme-heme and heme-ligand interactions in the di-heme oxygen-reducing site of cytochrome bd from Escherichia coli revealed by nanosecond absorption spectroscopy

Rappaport, F., Zhang, J., Vos, M. H., Gennis, R. B. & Borisov, V. B., Sep 1 2010, In : Biochimica et Biophysica Acta - Bioenergetics. 1797, 9, p. 1657-1664 8 p.

Research output: Contribution to journalArticle

Carbon Monoxide
Cytochromes
Heme
Absorption spectroscopy
Escherichia coli
2018

Type 2 NADH dehydrogenase is the only point of entry for electrons into the Streptococcus agalactiae respiratory chain and is a potential drug target

Lencina, A. M., Franza, T., Sullivan, M. J., Ulett, G. C., Ipe, D. S., Gaudu, P., Gennis, R. B. & Schurig-Briccio, L. A., Jul 1 2018, In : mBio. 9, 4, e01034-18.

Research output: Contribution to journalArticle

Open Access
NADH Dehydrogenase
Streptococcus agalactiae
Electron Transport
Electrons
Oxidoreductases
2012

Proton transfer in ba 3 cytochrome c oxidase from Thermus thermophilus

Von Ballmoos, C., Ädelroth, P., Gennis, R. B. & Brzezinski, P., Apr 1 2012, In : Biochimica et Biophysica Acta - Bioenergetics. 1817, 4, p. 650-657 8 p.

Research output: Contribution to journalReview article

Thermus thermophilus
Proton transfer
Electron Transport Complex IV
Protons
Oxidoreductases

Cell-free synthesis of cytochrome bo 3 ubiquinol oxidase in artificial membranes

Yildiz, A. A., Knoll, W., Gennis, R. B. & Sinner, E. K., Apr 1 2012, In : Analytical Biochemistry. 423, 1, p. 39-45 7 p.

Research output: Contribution to journalArticle

Artificial Membranes
Cytochromes
Membranes
Membrane Proteins
Proteins
2015

The two transmembrane helices of CcoP are sufficient for assembly of the cbb3-type heme-copper oxygen reductase from Vibrio cholerae

Ahn, Y. O., Lee, H. J., Kaluka, D., Yeh, S. R., Rousseau, D. L., Ädelroth, P. & Gennis, R. B., Jul 13 2015, In : Biochimica et Biophysica Acta - Bioenergetics. 1847, 10, p. 1231-1239 9 p.

Research output: Contribution to journalArticle

Vibrio cholerae
Heme
Copper
Oxidoreductases
Oxygen
2016

A Purple Cupredoxin from Nitrosopumilus maritimus Containing a Mononuclear Type 1 Copper Center with an Open Binding Site

Hosseinzadeh, P., Tian, S., Marshall, N. M., Hemp, J., Mullen, T., Nilges, M. J., Gao, Y. G., Robinson, H., Stahl, D. A., Gennis, R. B. & Lu, Y., May 25 2016, In : Journal of the American Chemical Society. 138, 20, p. 6324-6327 4 p.

Research output: Contribution to journalArticle

Binding sites
Copper
Binding Sites
electron spin resonance
copper
2011

Differential effects of glutamate-286 mutations in the aa3-type cytochrome c oxidase from Rhodobacter sphaeroides and the cytochrome bo 3 ubiquinol oxidase from Escherichia coli

Egawa, T., Ganesan, K., Lin, M. T., Yu, M. A., Hosler, J. P., Yeh, S. R., Rousseau, D. L. & Gennis, R. B., Oct 1 2011, In : Biochimica et Biophysica Acta - Bioenergetics. 1807, 10, p. 1342-1348 7 p.

Research output: Contribution to journalArticle

Rhodobacter sphaeroides
Electron Transport Complex IV
Cytochromes
Escherichia coli
Protons
2012

Interactions of intermediate semiquinone with surrounding protein residues at the QH site of wild-type and D75H mutant cytochrome bo 3 from Escherichia coli

Lin, M. T., Baldansuren, A., Hart, R., Samoilova, R. I., Narasimhulu, K. V., Yap, L. L., Choi, S. K., O'Malley, P. J., Gennis, R. B. & Dikanov, S. A., May 8 2012, In : Biochemistry. 51, 18, p. 3827-3838 12 p.

Research output: Contribution to journalArticle

Cytochromes
Labeling
Escherichia coli
Nitrogen
Proteins
2010
Bacteriorhodopsins
Deprotonation
Proton transfer
Protons
Water
Rhodobacter sphaeroides
Electron Transport Complex IV
Protons
Hydrogen
Mutation
2015

Antiinfectives targeting enzymes and the proton motive force

Feng, X., Zhu, W., Schurig-Briccio, L. A., Lindert, S., Shoen, C., Hitchings, R., Li, J., Wang, Y., Baig, N., Zhou, T., Kim, B. K., Crick, D. C., Cynamon, M., McCammon, J. A., Gennis, R. B. & Oldfield, E., Dec 22 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 51, p. E7073-E7082

Research output: Contribution to journalArticle

Proton-Motive Force
Mycobacterium tuberculosis
undecaprenyl pyrophosphate synthetase
Membranes
Staphylococcus aureus
2019
Vitamin K 2
Cytochromes
Escherichia coli
Binding Sites
coenzyme Q10
2012

Spectral identification of intermediates generated during the reaction of dioxygen with the wild-type and EQ(I-286) mutant of rhodobacter sphaeroides cytochrome c oxidase

Szundi, I., Funatogawa, C., Cassano, J., McDonald, W., Ray, J., Hiser, C., Ferguson-Miller, S., Gennis, R. B. & Einarsdóttir, Ó., Nov 20 2012, In : Biochemistry. 51, 46, p. 9302-9311 10 p.

Research output: Contribution to journalArticle

Rhodobacter sphaeroides
Electron Transport Complex IV
Oxygen
Enzymes
Protons
2013

Single mutations that redirect internal proton transfer in the ba 3 oxidase from thermus thermophilus

Smirnova, I., Chang, H. Y., Von Ballmoos, C., Ädelroth, P., Gennis, R. B. & Brzezinski, P., Oct 8 2013, In : Biochemistry. 52, 40, p. 7022-7030 9 p.

Research output: Contribution to journalArticle

Thermus thermophilus
Proton transfer
Protons
Oxidoreductases
Mutation
2014

Subunit CydX of Escherichia coli cytochrome bd ubiquinol oxidase is essential for assembly and stability of the di-heme active site

Hoeser, J., Hong, S., Gehmann, G., Gennis, R. B. & Friedrich, T., May 2 2014, In : FEBS Letters. 588, 9, p. 1537-1541 5 p.

Research output: Contribution to journalArticle

Cytochromes
Heme
Escherichia coli
Catalytic Domain
Technology
2018

Cytochromes bd-I and bo3 are essential for the bactericidal effect of microcin J25 on Escherichia coli cells

Galván, A. E., Chalón, M. C., Schurig-Briccio, L. A., Salomón, R. A., Minahk, C. J., Gennis, R. B. & Bellomio, A., Feb 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 2, p. 110-118 9 p.

Research output: Contribution to journalArticle

Open Access
Cytochromes
Escherichia coli
Cell Respiration
Oxygen
Membranes
2010

The diheme cytochrome c 4 from Vibrio cholerae is a natural electron donor to the respiratory cbb 3 oxygen reductase

Chang, H. Y., Ahn, Y., Pace, L. A., Lin, M. T., Lin, Y. H. & Gennis, R. B., Sep 7 2010, In : Biochemistry. 49, 35, p. 7494-7503 10 p.

Research output: Contribution to journalArticle

Vibrio cholerae
Oxidoreductases
Electrons
Oxygen
Proteobacteria
2012

Reconstitution of respiratory oxidases in membrane nanodiscs for investigation of proton-coupled electron transfer

Näsvik Öjemyr, L., Von Ballmoos, C., Gennis, R. B., Sligar, S. & Brzezinski, P., Mar 9 2012, In : FEBS Letters. 586, 5, p. 640-645 6 p.

Research output: Contribution to journalReview article

Liposomes
Protons
Oxidoreductases
Electrons
Membranes
2014

Characterization of the type 2 NADH:menaquinone oxidoreductases from Staphylococcus aureus and the bactericidal action of phenothiazines

Schurig-Briccio, L. A., Yano, T., Rubin, H. & Gennis, R. B., Jul 2014, In : Biochimica et Biophysica Acta - Bioenergetics. 1837, 7, p. 954-963 10 p.

Research output: Contribution to journalArticle

Phenothiazines
Vitamin K 2
NAD
Staphylococcus aureus
Oxidoreductases

Conformational coupling between the active site and residues within the KC-channel of the Vibrio cholerae cbb3-type (C-family) oxygen reductase

Ahn, Y. O., Mahinthichaichan, P., Lee, H. J., Ouyang, H., Kaluka, D., Yeh, S. R., Arjona, D., Rousseau, D. L., Tajkhorshid, E., Ädelroth, P. & Gennis, R. B., Oct 21 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 42, p. E4419-E4428

Research output: Contribution to journalArticle

Vibrio cholerae
Catalytic Domain
Oxidoreductases
Oxygen
Protons
2011

High-resolution membrane protein structure by joint calculations with solid-state NMR and X-ray experimental data

Tang, M., Sperling, L. J., Berthold, D. A., Schwieters, C. D., Nesbitt, A. E., Nieuwkoop, A. J., Gennis, R. B. & Rienstra, C. M., Nov 1 2011, In : Journal of Biomolecular NMR. 51, 3, p. 227-233 7 p.

Research output: Contribution to journalArticle

Nuclear magnetic resonance spectroscopy
Membrane Proteins
Magnetic Resonance Spectroscopy
Joints
X-Rays
2012

Exploring the proton pump and exit pathway for pumped protons in cytochrome ba 3 from Thermus thermophilus

Chang, H. Y., Choi, S. K., Vakkasoglu, A. S., Chen, Y., Hemp, J., Fee, J. A. & Gennis, R. B., Apr 3 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 14, p. 5259-5264 6 p.

Research output: Contribution to journalArticle

Thermus thermophilus
Proton Pumps
Propionates
Protons
Hydrogen
2011

Entrance of the proton pathway in cbb 3-type heme-copper oxidases

Lee, H. J., Gennis, R. B. & Ädelroth, P., Oct 25 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 43, p. 17661-17666 6 p.

Research output: Contribution to journalArticle

Heme
Protons
Rhodobacter sphaeroides
Proton-Motive Force
Membranes
2010

The quinone-binding sites of the cytochrome bo3 ubiquinol oxidase from Escherichia coli

Yap, L. L., Lin, M. T., Ouyang, H., Samoilova, R. I., Dikanov, S. A. & Gennis, R. B., Dec 1 2010, In : Biochimica et Biophysica Acta - Bioenergetics. 1797, 12, p. 1924-1932 9 p.

Research output: Contribution to journalArticle

Cytochromes
coenzyme Q10
Escherichia coli
Binding Sites
Enzymes

Modeling direct electron transfer to a multi-redox center protein: Cytochrome c Oxidase

Schach, D., Nowak, C., Gennis, R. B., Ferguson-Miller, S., Knoll, W., Walz, D. & Naumann, R. L. C., Nov 15 2010, In : Journal of Electroanalytical Chemistry. 649, 1-2, p. 268-276 9 p.

Research output: Contribution to journalArticle

Electron Transport Complex IV
Proteins
Electrons
Lipid bilayers
Enzymes
2014

Multitarget drug discovery for tuberculosis and other infectious diseases

Li, K., Schurig-Briccio, L. A., Feng, X., Upadhyay, A., Pujari, V., Lechartier, B., Fontes, F. L., Yang, H., Rao, G., Zhu, W., Gulati, A., No, J. H., Cintra, G., Bogue, S., Liu, Y. L., Molohon, K., Orlean, P., Mitchell, D. A., Freitas-Junior, L., Ren, F. & 8 others, Sun, H., Jiang, T., Li, Y., Guo, R. T., Cole, S. T., Gennis, R. B., Crick, D. C. & Oldfield, E., Apr 10 2014, In : Journal of Medicinal Chemistry. 57, 7, p. 3126-3129 4 p.

Research output: Contribution to journalReview article

Drug Discovery
Malaria
Communicable Diseases
Parasites
Tuberculosis
2013

Structure of the disulfide bond generating membrane protein DsbB in the lipid bilayer

Tang, M., Nesbitt, A. E., Sperling, L. J., Berthold, D. A., Schwieters, C. D., Gennis, R. B. & Rienstra, C. M., May 27 2013, In : Journal of Molecular Biology. 425, 10, p. 1670-1682 13 p.

Research output: Contribution to journalArticle

Lipid Bilayers
Molecular Dynamics Simulation
Disulfides
Membrane Proteins
X-Rays
2015

Plasticity in the High Affinity Menaquinone Binding Site of the Cytochrome aa3-600 Menaquinol Oxidase from Bacillus subtilis

Yi, S. M., Taguchi, A. T., Samoilova, R. I., O'Malley, P. J., Gennis, R. B. & Dikanov, S. A., Jul 21 2015, In : Biochemistry. 54, 32, p. 5030-5044 15 p.

Research output: Contribution to journalArticle

Vitamin K 2
Electron Transport Complex IV
Bacilli
Bacillus subtilis
Plasticity
2012

Structure changes upon deprotonation of the proton release group in the bacteriorhodopsin photocycle

Morgan, J. E., Vakkasoglu, A. S., Lanyi, J. K., Lugtenburg, J., Gennis, R. B. & Maeda, A., Aug 8 2012, In : Biophysical journal. 103, 3, p. 444-452 9 p.

Research output: Contribution to journalArticle

Bacteriorhodopsins
Protons
Water
Fourier Analysis
2013

Solid-state NMR study of a 41 kDa membrane protein complex DsbA/DsbB

Sperling, L. J., Tang, M., Berthold, D. A., Nesbitt, A. E., Gennis, R. B. & Rienstra, C. M., May 23 2013, In : Journal of Physical Chemistry B. 117, 20, p. 6052-6060 9 p.

Research output: Contribution to journalArticle

Chemical shift
chemical equilibrium
Catalytic Domain
Membrane Proteins
Nuclear magnetic resonance
2018
Cytochromes
Escherichia coli
Protons
Glutamic Acid
Electrons
2016

CtaM is required for menaquinol oxidase aa 3 function in Staphylococcus aureus

Hammer, N. D., Schurig-Briccio, L. A., Gerdes, S. Y., Gennis, R. B. & Skaar, E. P., Jul 1 2016, In : mBio. 7, 4, e00823-16.

Research output: Contribution to journalArticle

Staphylococcus aureus
Oxidoreductases
Electron Transport
Heme
Oxygen
2018
Oxidoreductases
Nitric Oxide
Substrates
Catalytic Domain
Tunnels
2010
Rhodobacter sphaeroides
Electron Transport Complex IV
Heme
Electrons
Protons
2019

Characterization and X-ray structure of the NADH-dependent coenzyme A disulfide reductase from Thermus thermophilus

Lencina, A. M., Koepke, J., Preu, J., Muenke, C., Gennis, R. B., Michel, H. & Schurig-Briccio, L. A., Nov 1 2019, In : Biochimica et Biophysica Acta - Bioenergetics. 1860, 11, 148080.

Research output: Contribution to journalArticle

Thermus thermophilus
Vitamin K 3
NAD
Oxidoreductases
X-Rays