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2013

Electrochemistry at the edge of a single graphene layer in a nanopore

Banerjee, S., Shim, J., Rivera, J., Jin, X., Estrada, D., Solovyeva, V., You, X., Pak, J., Pop, E., Aluru, N. & Bashir, R., Jan 22 2013, In : ACS Nano. 7, 1, p. 834-843 10 p.

Research output: Contribution to journalArticle

Nanopores
Graphite
Electrochemistry
electrochemistry
Graphene
2018

Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines

Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In : Advanced Functional Materials. 28, 23, 1801145.

Research output: Contribution to journalArticle

walking machines
Scaffolds
Robotics
Actuators
Tissue
2012

Label-free electrical detection of pyrophosphate generated from DNA polymerase reactions on field-effect devices

Credo, G. M., Su, X., Wu, K., Elibol, O. H., Liu, D. J., Reddy, B., Tsai, T. W., Dorvel, B. R., Daniels, J. S., Bashir, R. & Varma, M., Mar 21 2012, In : Analyst. 137, 6, p. 1351-1362 12 p.

Research output: Contribution to journalArticle

Labels
DNA
Chelating Agents
sensor
Equipment and Supplies
2013

Detection and quantification of methylation in DNA using solid-state nanopores

Shim, J., Humphreys, G. I., Venkatesan, B. M., Munz, J. M., Zou, X., Sathe, C., Schulten, K., Kosari, F., Nardulli, A. M., Vasmatzis, G. & Bashir, R., Mar 25 2013, In : Scientific reports. 3, 1389.

Research output: Contribution to journalArticle

Nanopores
DNA Methylation
Methylation
Epigenomics
5-Methylcytosine
2011

How far cardiac cells can see each other mechanically

Tang, X., Bajaj, P., Bashir, R. & Saif, T. A., Jul 7 2011, In : Soft Matter. 7, 13, p. 6151-6158 8 p.

Research output: Contribution to journalArticle

Substrates
cells
Stiffness
Continuum mechanics
Tissue
2012

Mechanical communication between cardiac cell leads to synchrony in beating

Tang, X., Bajaj, P., Bashir, R. & Saif, T., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 333-334 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Elastic moduli
Stiffness
Communication
2014

Coincidence detection of heterogeneous cell populations from whole blood with coplanar electrodes in a microfluidic impedance cytometer

Hassan, U. & Bashir, R., Nov 21 2014, In : Lab on a chip. 14, 22, p. 4370-4381 12 p.

Research output: Contribution to journalArticle

Microfluidics
Electric Impedance
Electrodes
Blood
Cells
2010

Stiffness of the substrate influences the phenotype of embryonic chicken cardiac myocytes

Bajaj, P., Tang, X., Saif, T. A. & Bashir, R., Dec 15 2010, In : Journal of Biomedical Materials Research - Part A. 95, 4, p. 1261-1269 9 p.

Research output: Contribution to journalArticle

Tissue culture
Stiffness
Polyacrylates
Substrates
Adhesion

Fabrication of silicon nanoplate and nanowire biosensor arrays with high specificity and sub-picomolar limits of detection

Dorvel, B., Reddy, B., Bergstrom, D., Alam, M. A., Clare, S. & Bashir, R., Dec 1 2010, 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010. p. 1871-1873 3 p. (14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Field effect transistors
Biosensors
Nanowires
Fabrication
Silicon
2017

Biomimicry, Biofabrication, and Biohybrid Systems: The Emergence and Evolution of Biological Design

Raman, R. & Bashir, R., Oct 25 2017, In : Advanced Healthcare Materials. 6, 20, 1700496.

Research output: Contribution to journalArticle

Biological Evolution
Curriculum
History
Curricula
Systems analysis
2018

Biodegradable Monocrystalline Silicon Photovoltaic Microcells as Power Supplies for Transient Biomedical Implants

Lu, L., Yang, Z., Meacham, K., Cvetkovic, C., Corbin, E. A., Vázquez-Guardado, A., Xue, M., Yin, L., Boroumand, J., Pakeltis, G., Sang, T., Yu, K. J., Chanda, D., Bashir, R., Gereau, R. W., Sheng, X. & Rogers, J. A., Jun 5 2018, In : Advanced Energy Materials. 8, 16, 1703035.

Research output: Contribution to journalArticle

Monocrystalline silicon
Oils and fats
Skin
Fats
Tissue
2015

Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In : Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.

Research output: Contribution to journalArticle

Shape optimization
Muscle
Skeletal Muscle
Tissue
Muscles
2011

Electrical detection of dsDNA and polymerase chain reaction amplification

Salm, E., Liu, Y. S., Marchwiany, D., Morisette, D., He, Y., Bhunia, A. K. & Bashir, R., Dec 2011, In : Biomedical microdevices. 13, 6, p. 973-982 10 p.

Research output: Contribution to journalArticle

Polymerase chain reaction
Amplification
DNA
Polymerase Chain Reaction
Deionized water
2014

Micro-masonry of MEMS sensors and actuators

Zhang, Y., Keum, H., Park, K., Bashir, R. & Kim, S., Apr 2014, In : Journal of Microelectromechanical Systems. 23, 2, p. 308-314 7 p., 6570758.

Research output: Contribution to journalArticle

MEMS
Actuators
Microfabrication
Sensors
Rapid thermal annealing
2016

Direct characterization of hydrodynamic loading on a microelectromechanical systems microstructure

Mehrnezhad, A., Bashir, R. & Park, K., Mar 14 2016, In : Applied Physics Letters. 108, 11, 114101.

Research output: Contribution to journalArticle

microelectromechanical systems
hydrodynamics
microstructure
viscous fluids
resonators
2012

Improved graphene growth and fluorination on Cu with clean transfer to surfaces

Wood, J. D., Schmucker, S. W., Haasch, R. T., Doidge, G. P., Nienhaus, L., Damhorst, G. L., Lyons, A. S., Gruebele, M., Bashir, R., Pop, E. & Lyding, J. W., Nov 22 2012, 2012 12th IEEE International Conference on Nanotechnology, NANO 2012. 6322101. (Proceedings of the IEEE Conference on Nanotechnology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorination
fluorination
Graphite
Graphene
graphene
2013

Tailoring the dependency between rigidity and water uptake of a microfabricated hydrogel with the conformational rigidity of a polymer cross-linker

Schmidt, J. J., Jeong, J. H., Chan, V., Cha, C., Baek, K., Lai, M. H., Bashir, R. & Kong, H., May 13 2013, In : Biomacromolecules. 14, 5, p. 1361-1369 9 p.

Research output: Contribution to journalArticle

Hydrogel
Hydrogels
Rigidity
Polymers
Methacrylates
2017

Biohybrid actuators for robotics: A review of devices actuated by living cells

Ricotti, L., Trimmer, B., Feinberg, A. W., Raman, R., Parker, K. K., Bashir, R., Sitti, M., Martel, S., Dario, P. & Menciassi, A., Nov 22 2017, In : Science Robotics. 2, 12, eaaq0495.

Research output: Contribution to journalReview article

Robotics
Actuator
Actuators
Cells
Molecular Motor
2015

Graphene-Based Platform for Infrared Near-Field Nanospectroscopy of Water and Biological Materials in an Aqueous Environment

Khatib, O., Wood, J. D., McLeod, A. S., Goldflam, M. D., Wagner, M., Damhorst, G. L., Koepke, J. C., Doidge, G. P., Rangarajan, A., Bashir, R., Pop, E., Lyding, J. W., Thiemens, M. H., Keilmann, F. & Basov, D. N., Aug 25 2015, In : ACS Nano. 9, 8, p. 7968-7975 8 p.

Research output: Contribution to journalArticle

Graphite
Biological materials
Graphene
near fields
graphene
2011

Surface immobilizable chelator for label-free electrical detection of pyrophosphate

Liu, D. J., Credo, G. M., Su, X., Wu, K., Lim, H. C., Elibol, O. H., Bashir, R. & Varma, M., Aug 7 2011, In : Chemical Communications. 47, 29, p. 8310-8312 3 p.

Research output: Contribution to journalArticle

Chelating Agents
Labels
Silicon
Field effect transistors
Sensors
2016

Optogenetic skeletal muscle-powered adaptive biological machines

Raman, R., Cvetkovic, C., Uzel, S. G. M., Platt, R. J., Sengupta, P., Kamm, R. D. & Bashir, R., Mar 29 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 13, p. 3497-3502 6 p.

Research output: Contribution to journalArticle

Optogenetics
Bioengineering
Locomotion
Skeleton
Skeletal Muscle
2012
Stereolithography
Medicine
Tissue Engineering
Electrophoresis
Tissue engineering
2011

Label-free imaging of cell attachment with photonic crystal enhanced microscopy

Lidstone, E. A., Chaudhery, V., Kohl, A., Chan, V., Wolf-Jensen, T., Schook, L. B., Bashir, R. & Cunningham, B. T., Sep 21 2011, In : Analyst. 136, 18, p. 3608-3615 8 p.

Research output: Contribution to journalArticle

Optics and Photonics
Photonic crystals
Labels
microscopy
Microscopy
2015

Engineering as a new frontier for translational medicine

Chien, S., Bashir, R., Nerem, R. M. & Pettigrew, R., Apr 1 2015, In : Science Translational Medicine. 7, 281, 281fs13.

Research output: Contribution to journalArticle

Translational Medical Research
Medicine
Delivery of Health Care
Therapeutics
2014

Flow metering characterization within an electrical cell counting microfluidic device

Hassan, U., Watkins, N. N., Edwards, C. & Bashir, R., Apr 21 2014, In : Lab on a Chip. 14, 8, p. 1469-1476 8 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
Blood
Fluids
Flow of fluids

Dissolution chemistry and biocompatibility of single-crystalline silicon nanomembranes and associated materials for transient electronics

Hwang, S. W., Park, G., Edwards, C., Corbin, E. A., Kang, S. K., Cheng, H., Song, J. K., Kim, J. H., Yu, S., Ng, J., Lee, J. E., Kim, J., Yee, C., Bhaduri, B., Omennetto, F. G., Huang, Y., Bashir, R., Goddard, L., Popescu, G., Lee, K. M. & 1 others, Rogers, J. A., Jun 24 2014, In : ACS Nano. 8, 6, p. 5843-5851 9 p.

Research output: Contribution to journalArticle

biocompatibility
Silicon
Biocompatibility
dissolving
Dissolution
2013

On-chip magnetic separation and encapsulation of cells in droplets

Chen, A., Byvank, T., Chang, W. J., Bharde, A., Vieira, G., Miller, B. L., Chalmers, J. J., Bashir, R. & Sooryakumar, R., Mar 21 2013, In : Lab on a chip. 13, 6, p. 1172-1181 10 p.

Research output: Contribution to journalArticle

Magnetic separation
Cell Separation
Encapsulation
Sorting
Contamination
2017

Detection of methylation on dsDNA using nanopores in a MoS2 membrane

Shim, J., Banerjee, S., Qiu, H., Smithe, K. K. H., Estrada, D., Bello, J., Pop, E., Schulten, K. & Bashir, R., Oct 31 2017, In : Nanoscale. 9, 39, p. 14836-14845 10 p.

Research output: Contribution to journalArticle

Methylation
Nanopores
Membranes
Cytosine Nucleotides
DNA
2018

Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

Hassan, U., Zhu, R. & Bashir, R., Jan 1 2018, In : Lab on a chip. 18, 8, p. 1231-1240 10 p.

Research output: Contribution to journalArticle

Biosensing Techniques
Biosensors
Sepsis
Multivariate Analysis
Systemic Inflammatory Response Syndrome
2011

Patterning the differentiation of C2C12 skeletal myoblasts

Bajaj, P., Reddy, B., Millet, L., Wei, C., Zorlutuna, P., Bao, G. & Bashir, R., Sep 1 2011, In : Integrative Biology. 3, 9, p. 897-909 13 p.

Research output: Contribution to journalArticle

Skeletal Myoblasts
Fusion reactions
Muscle
Substrates
Cells
2015

A semiconductor bio-electrical platform with addressable thermal control circuits for accelerated bioassay development

Chen, T. T., Wen, C. H., Huang, J. C., Peng, Y. C., Liu, S., Su, S. H., Cheng, L. H., Lai, H. C., Liao, T. C., Lai, F. L., Cheng, C. W., Yang, C. K., Yang, J. H., Hsieh, Y. J., Salm, E., Reddy, B., Tsui, F., Liu, Y. S., Bashir, R. & Chen, M., Feb 20 2015, In : Technical Digest - International Electron Devices Meeting, IEDM. 2015-February, February, p. 15.4.1-15.4.4 7047058.

Research output: Contribution to journalConference article

bioassay
Bioassay
platforms
Pixels
pixels
2014

Nano/micro and spectroscopic approaches to food pathogen detection

Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In : Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

Research output: Contribution to journalReview article

Pathogens
Bacteriophages
Biosensors
Light scattering
Explosions

Creating living cellular machines

Kamm, R. D. & Bashir, R., Feb 2014, In : Annals of Biomedical Engineering. 42, 2, p. 445-459 15 p.

Research output: Contribution to journalArticle

Microfabrication
Nanotechnology
Scaffolds
Self assembly
Chemical properties
2015

Enhanced sub-micron colloidal particle separation with interdigitated microelectrode arrays using mixed AC/DC dielectrophoretic scheme

Swaminathan, V. V., Shannon, M. A. & Bashir, R., Jan 1 2015, In : Biomedical microdevices. 17, 2

Research output: Contribution to journalArticle

Microelectrodes
Electrodes
DNA Viruses
Colloids
Static Electricity
2011

Separating beads and cells in multi-channel microfluidic devices using dielectrophoresis and laminar flow.

Millet, L. J., Park, K., Watkins, N. N., Hsia, K. J. & Bashir, R., Dec 1 2011, In : Journal of visualized experiments : JoVE. 48

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Electrophoresis
Laminar flow
Microfluidics
Fluidics
2018

A microfluidic biochip platform for electrical quantification of proteins

Valera, E., Berger, J., Hassan, U., Ghonge, T., Liu, J., Rappleye, M., Winter, J., Abboud, D., Haidry, Z., Healey, R., Hung, N. T., Leung, N., Mansury, N., Hasnain, A., Lannon, C., Price, Z., White, K. & Bashir, R., Jan 1 2018, In : Lab on a chip. 18, 10, p. 1461-1470 10 p.

Research output: Contribution to journalArticle

Biochips
Microfluidics
Biomarkers
Sepsis
Point-of-Care Systems

Robust label-free microRNA detection using one million ISFET array

Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In : Biomedical microdevices. 20, 2, 1 p.

Research output: Contribution to journalArticle

Ion sensitive field effect transistors
Nucleic acids
MicroRNAs
Nucleic Acids
Labels
2011

Examining cellular interactions in 3-dimensional microenvironments

Zorlutuna, P., Jeong, J. H., Kong, H. & Bashir, R., 2011, 24th European Conference on Biomaterials - Annual Conference of the European Society for Biomaterials, ESB 2011.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

"Living" microvascular stamp for patterning of functional neovessels; Orchestrated control of matrix property and geometry

Jeong, J. H., Chan, V., Cha, C., Zorlutuna, P., Dyck, C., Hsia, K. J., Bashir, R. & Kong, H., Jan 3 2012, In : Advanced Materials. 24, 1, p. 58-63 6 p.

Research output: Contribution to journalArticle

Angiogenesis Inducing Agents
Hydrogels
Geometry
Hydrogel
2014

Material-mediated proangiogenic factor release pattern modulates quality of regenerated blood vessels

Rich, M. H., Lee, M. K., Baek, K., Jeong, J. H., Kim, D. H., Millet, L. J., Bashir, R. & Kong, H., Dec 28 2014, In : Journal of Controlled Release. 196, p. 363-369 7 p.

Research output: Contribution to journalArticle

Blood Vessels
Hydrogel
Vascular Endothelial Growth Factor A
Gels
Ink
2011

A microfabricated electrical differential counter for the selective enumeration of CD4+ T lymphocytes

Watkins, N. N., Sridhar, S., Cheng, X., Chen, G. D., Toner, M., Rodriguez, W. & Bashir, R., Apr 21 2011, In : Lab on a chip. 11, 8, p. 1437-1447 11 p.

Research output: Contribution to journalArticle

T-cells
T-Lymphocytes
Leukocytes
Cell Count
Immobilized Antibodies
2015

Stereolithographic 3D bioprinting for biomedical applications

Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bioprinting
Technology
Stereolithography
Medical applications
Biomedical Technology
2014

Electrical cell counting process characterization in a microfluidic impedance cytometer

Hassan, U. & Bashir, R., Jan 1 2014, In : Biomedical microdevices. 16, 5, p. 697-704 8 p.

Research output: Contribution to journalArticle

Microfluidics
Electric Impedance
Dilution
Blood
Lab-On-A-Chip Devices
2017

Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya, and Dengue at point-of-care

Ganguli, A., Ornob, A., Yu, H., Damhorst, G. L., Chen, W., Sun, F., Bhuiya, A., Cunningham, B. T. & Bashir, R., Dec 1 2017, In : Biomedical microdevices. 19, 4, 73.

Research output: Contribution to journalArticle

Point-of-Care Systems
Dengue
Smartphones
Blood
Hand
2016

On-chip electrical detection of parallel loop-mediated isothermal amplification with DG-BioFETs for the detection of foodborne bacterial pathogens

Duarte-Guevara, C., Swaminathan, V. V., Reddy, B., Huang, J. C., Liu, Y. S. & Bashir, R., Jan 1 2016, In : RSC Advances. 6, 106, p. 103872-103887 16 p.

Research output: Contribution to journalArticle

Pathogens
Amplification
Gold
Assays
Nucleic acids
2017

A modular approach to the design, fabrication, and characterization of muscle-powered biological machines

Raman, R., Cvetkovic, C. & Bashir, R., Mar 1 2017, In : Nature Protocols. 12, 3, p. 519-533 15 p.

Research output: Contribution to journalArticle

Skeleton
Muscle
Actuators
Fabrication
Muscles
2012

Integrated lab on chip for detection of cells and micro-organisms

Salm, E., Duarte, C. & Bashir, R., Dec 1 2012, 2012 IEEE Photonics Conference, IPC 2012. p. 145-146 2 p. 6358531. (2012 IEEE Photonics Conference, IPC 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Transistors
Field effect transistors
Lab-on-a-chip
Hybrid sensors
Heating
2013

Direct DNA sequencing using nanopore sensors

Bashir, R., Apr 1 2013, In : Genetic Engineering and Biotechnology News. 33, 7, p. 34-35+45

Research output: Contribution to journalArticle

Nanopores
DNA Sequence Analysis
DNA
Sensors
Sensor
2010

Fluidic measurement of electric field sensitivity of Ti-GaAs Schottky junction gated field effect biosensors

Chang, W. J., Suk, H. J., Newaz, A. K. M., Wallace, K. D., Wickline, S. A., Solin, S. A. & Bashir, R., Oct 1 2010, In : Biomedical microdevices. 12, 5, p. 849-854 6 p.

Research output: Contribution to journalArticle

Fluidics
Biosensing Techniques
Biosensors
Semiconductors
Metals
2011

Erratum: Electrical detection of dsDNA and polymerase chain reaction amplification (Biomedical Microdevices DOI: 10.1007/s10544-011-9567-x)

Salm, E., Liu, Y. S., Marchwiany, D., Morisette, D., He, Y., Razouk, L., Bhunia, A. K. & Bashir, R., Dec 1 2011, In : Biomedical microdevices. 13, 6, 1 p.

Research output: Contribution to journalComment/debate

Polymerase chain reaction
Amplification
Polymerase Chain Reaction