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Publication Year

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Author

  • Joseph Maria Kumar Irudayaraj
2015

Graphene laminated gold bipyramids as sensitive detection platforms for antibiotic molecules

Lee, S., Kumar, P., Hu, Y., Cheng, G. J. & Irudayaraj, J., 2015, In : Chemical Communications. 51, 85, p. 15494-15497 4 p.

Research output: Contribution to journalArticle

2014

Quantification of 5-methylcytosine, 5-hydroxymethylcytosine and 5-carboxylcytosine from the blood of cancer patients by an enzyme-based immunoassay

Chowdhury, B., Cho, I. H., Hahn, N. & Irudayaraj, J., Dec 10 2014, In : Analytica Chimica Acta. 852, p. 212-217 6 p.

Research output: Contribution to journalArticle

2011

Surface-enhanced Raman imaging of intracellular bioreduction of chromate in Shewanella oneidensis

Ravindranath, S. P., Henne, K. L., Thompson, D. K. & Irudayaraj, J., 2011, In : PloS one. 6, 2, e16634.

Research output: Contribution to journalArticle

2014

Quantifying local density of optical states of nanorods by fluorescence lifetime imaging

Liu, J., Jiang, X., Ishii, S., Shalaev, V. & Irudayaraj, J., 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 89501E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8950).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Optical microscopy and spectroscopy for epigenetic modifications in single living cells

Cui, Y. & Irudayaraj, J., Jan 1 2017, Methods in Pharmacology and Toxicology. Humana Press Inc., p. 135-154 20 p. (Methods in Pharmacology and Toxicology).

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

New approaches in microbial pathogen detection

Kahyaoglu, L. N. & Irudayaraj, J., Jul 1 2013, Advances in Microbial Food Safety. Elsevier Ltd, Vol. 1. p. 202-226 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Quantitative real-time kinetics of optogenetic proteins CRY2 and CIB1/N using single-molecule tools

Cui, Y., Choudhury, S. R. & Irudayaraj, J., Aug 1 2014, In : Analytical Biochemistry. 458, p. 58-60 3 p.

Research output: Contribution to journalArticle

2018

Electrospun probiotics: An alternative for encapsulation

Akbar, Z., Zahoor, T., Huma, N., Jamil, A., Ayesha, H. & Irudayaraj, J. M. K., Nov 2018, In : Journal of Biological Regulators and Homeostatic Agents. 32, 6, p. 1551-1556 6 p.

Research output: Contribution to journalArticle

2017

Monitoring focal adhesion kinase phosphorylation dynamics in live cells

Damayanti, N. P., Buno, K., Narayanan, N., Voytik Harbin, S. L., Deng, M. & Irudayaraj, J. M. K., Aug 7 2017, In : Analyst. 142, 15, p. 2713-2716 4 p.

Research output: Contribution to journalArticle

Single molecule Raman spectroscopic assay to detect transgene from GM plants

Kadam, U. S., Chavhan, R. L., Schulz, B. & Irudayaraj, J., Sep 1 2017, In : Analytical Biochemistry. 532, p. 60-63 4 p.

Research output: Contribution to journalArticle

Oxygen Nanobubble Tracking by Light Scattering in Single Cells and Tissues

Bhandari, P., Wang, X. & Irudayaraj, J., Mar 28 2017, In : ACS Nano. 11, 3, p. 2682-2688 7 p.

Research output: Contribution to journalArticle

2013

A titanium nitride based metamaterial for applications in the visible

Naik, G. V., Saha, B., Liu, J., Saber, S. M., Stach, E., Joseph Irudayaraj, M. K., Sands, T. D., Shalaev, V. M. & Boltasseva, A., Nov 21 2013, CLEO: QELS_Fundamental Science, CLEO:QELS FS 2013. (CLEO: QELS_Fundamental Science, CLEO:QELS FS 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

Membrane filter-assisted surface enhanced Raman spectroscopy for the rapid detection of E. coli O157: H7 in ground beef

Cho, I. H., Bhandari, P., Patel, P. & Irudayaraj, J., Feb 15 2015, In : Biosensors and Bioelectronics. 64, p. 171-176 6 p.

Research output: Contribution to journalArticle

Latest developments of nanotoxicology in plants

Mura, S., Greppi, G. & Irudayaraj, J., Jan 1 2015, Nanotechnology and Plant Sciences: Nanoparticles and Their Impact on Plants. Springer International Publishing, p. 125-151 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

Oxygen nanobubbles revert hypoxia by methylation programming

Bhandari, P. N., Cui, Y., Elzey, B. D., Goergen, C. J., Long, C. M. & Irudayaraj, J., Dec 1 2017, In : Scientific reports. 7, 1, 9268.

Research output: Contribution to journalArticle

2014

Nano/micro and spectroscopic approaches to food pathogen detection

Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In : Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

Research output: Contribution to journalReview article

2017

Zinc oxide nanoparticles-induced reactive oxygen species promotes multimodal cyto- and epigenetic toxicity

Choudhury, S. R., Ordaz, J., Lo, C. L., Damayanti, N. P., Zhou, F. & Irudayaraj, J., Mar 1 2017, In : Toxicological Sciences. 156, 1, p. 261-274 14 p.

Research output: Contribution to journalArticle

2010

Application of an optically induced electrokinetic manipulation technique on live bacteria

Kwon, J. S., Ravindranath, S., Kumar, A., Irudayaraj, J. M. K. & Wereley, S. T., Dec 1 2010, ASME 2010 International Mechanical Engineering Congress and Exposition, IMECE 2010. p. 815-821 7 p. (ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE); vol. 10).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2011

A SERS DNAzyme biosensor for lead ion detection

Wang, Y. & Irudayaraj, J., Mar 29 2011, In : Chemical Communications. 47, 15, p. 4394-4396 3 p.

Research output: Contribution to journalArticle

2013

Differentiation of cancer cells in two-dimensional and three-dimensional breast cancer models by Raman spectroscopy

Damayanti, N. P., Fang, Y., Parikh, M. R., Craig, A. P., Kirshner, J. & Irudayaraj, J., Nov 1 2013, In : Journal of biomedical optics. 18, 11, 130383RR.

Research output: Contribution to journalArticle

One-stop genomic DNA extraction by salicylic acid-coated magnetic nanoparticles

Zhou, Z., Kadam, U. S. & Irudayaraj, J., 2013, In : Analytical Biochemistry. 442, 2, p. 249-252 4 p.

Research output: Contribution to journalArticle

2017

An integrated microsystem with dielectrophoresis enrichment and impedance detection for detection of Escherichia coli

Wang, R., Xu, Y., Liu, H., Peng, J., Irudayaraj, J. & Cui, F., Jun 1 2017, In : Biomedical microdevices. 19, 2, 34.

Research output: Contribution to journalArticle

2011

Fluorescent Ag clusters via a protein-directed approach as a Hg(II) ion sensor

Guo, C. & Irudayaraj, J., Apr 15 2011, In : Analytical chemistry. 83, 8, p. 2883-2889 7 p.

Research output: Contribution to journalArticle

2014

Quantitative imaging of single mRNA splice variants in living cells

Lee, K., Cui, Y., Lee, L. P. & Irudayaraj, J., Jun 2014, In : Nature Nanotechnology. 9, 6, p. 474-480 7 p.

Research output: Contribution to journalArticle

NuMA promotes homologous recombination repair by regulating the accumulation of the ISWI ATPase SNF2h at DNA breaks

Vidi, P. A., Liu, J., Salles, D., Jayaraman, S., Dorfman, G., Gray, M., Abad, P., Moghe, P. V., Irudayaraj, J. M., Wiesmüller, L. & Lelièvre, S. A., 2014, In : Nucleic acids research. 42, 10, p. 6365-6379 15 p.

Research output: Contribution to journalArticle

2013

Lateral-flow enzyme immunoconcentration for rapid detection of Listeria monocytogenes

Cho, I. H. & Irudayaraj, J., Apr 1 2013, In : Analytical and bioanalytical chemistry. 405, 10, p. 3313-3319 7 p.

Research output: Contribution to journalArticle

2010

Biocompatibility and biodistribution of surface-enhanced raman scattering nanoprobes in zebrafish embryos: In vivo and multiplex imaging

Wang, Y., Seebald, J. L., Szeto, D. P. & Irudayaraj, J., Jul 27 2010, In : ACS Nano. 4, 7, p. 4039-4053 15 p.

Research output: Contribution to journalArticle

2013

A hybrid FLIM-elastic net platform for label free profiling of breast cancer

Damayanti, N. P., Craig, A. P. & Irudayaraj, J., Dec 7 2013, In : Analyst. 138, 23, p. 7127-7134 8 p.

Research output: Contribution to journalArticle

2016

Kinase phosphorylation monitoring with i-motif DNA cross-linked SERS probes

Ren, W., Damayanti, N. P., Wang, X. & Irudayaraj, J. M. K., Jan 7 2016, In : Chemical Communications. 52, 2, p. 410-413 4 p.

Research output: Contribution to journalArticle

2015

Vibrational spectroscopy for food quality and safety screening

Craig, A. P., Franca, A. S. & Irudayaraj, J., Jan 1 2015, High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 165-194 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Non-fluorescent quantification of single mRNA with transient absorption microscopy

Liu, J. & Irudayaraj, J. M. K., Dec 14 2016, In : Nanoscale. 8, 46, p. 19242-19248 7 p.

Research output: Contribution to journalArticle

2015

Nanoscale histone localization in live cells reveals reduced chromatin mobility in response to DNA damage

Liu, J., Vidi, P. A., Lelièvre, S. A. & Irudayaraj, J. M. K., 2015, In : Journal of cell science. 128, 3, p. 599-604 6 p.

Research output: Contribution to journalArticle

Enhanced multi-photon emission from single NV center coupled to graphene by laser-shaping

Liu, J., Hu, Y., Kumar, P., Shalaginov, M. Y., Lagutchev, A. S., Shalaev, V. M., Cheng, G. J. & Irudayaraj, J. M. K., Aug 10 2015, 2015 Conference on Lasers and Electro-Optics, CLEO 2015. Institute of Electrical and Electronics Engineers Inc., 7183374. (Conference on Lasers and Electro-Optics Europe - Technical Digest; vol. 2015-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Enhanced multi-photon emission from single NV center coupled to graphene by laser-shaping

Liu, J., Hu, Y., Kumar, P., Shalaginov, M. Y., Lagutchev, A. S., Shalaev, V. M., Cheng, G. J. & Irudayaraj, J. M. K., May 4 2015, CLEO: QELS - Fundamental Science, CLEO_QELS 2015. Optical Society of America (OSA), p. 1551p (CLEO: QELS - Fundamental Science, CLEO_QELS 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Single-cell screening and quantification of transcripts in cancer tissues by second-harmonic generation microscopy

Liu, J., Damayanti, N. P., Cho, I. H., Polar, Y., Badve, S. & Irudayaraj, J. M. K., Sep 1 2015, In : Journal of biomedical optics. 20, 9, 096016.

Research output: Contribution to journalArticle

Cross-platform detection of epigenetic modifications from extracted chromatin in leucocytes from blood

Zhou, Z., Cho, II. H., Shan, Z. & Irudayaraj, J., Jun 1 2015, In : Analytical Chemistry Research. 4, p. 39-44 6 p.

Research output: Contribution to journalArticle

2014

Single-photon source based on NV center in nanodiamond coupled to TiN-based hyperbolic metamaterial

Shalaginov, M. Y., Vorobyov, V. V., Liu, J., Ferrera, M., Akimov, A. V., Lagutchev, A., Smolyaninov, A. N., Klimov, V. V., Irudayaraj, J., Kildishev, A. V., Boltasseva, A. & Shalaev, V. M., Jan 1 2014.

Research output: Contribution to conferencePaper

2010

Detection of E. coli O157:H7 from ground beef using fourier transform infrared (FT-IR) spectroscopy and chemometrics

Davis, R., Irudayaraj, J. M. K., Reuhs, B. L. & Mauer, L. J., Aug 1 2010, In : Journal of food science. 75, 6

Research output: Contribution to journalArticle

2011

Separation and detection of multiple pathogens in a food matrix by magnetic SERS nanoprobes

Wang, Y., Ravindranath, S. & Irudayaraj, J., Jan 1 2011, In : Analytical and bioanalytical chemistry. 399, 3, p. 1271-1278 8 p.

Research output: Contribution to journalArticle

2010

Detection and differentiation of live and heat-treated Salmonella enterica serovars inoculated onto chicken breast using Fourier transform infrared (FT-IR) spectroscopy

Davis, R., Burgula, Y., Deering, A., Irudayaraj, J., Reuhs, B. L. & Mauer, L. J., Dec 2010, In : Journal of Applied Microbiology. 109, 6, p. 2019-2031 13 p.

Research output: Contribution to journalArticle

2015

Rapid and unbiased extraction of chromatin associated RNAs from purified native chromatin

Zhou, Z., Yang, Y., Konieczny, S. F. & Irudayaraj, J. M. K., Dec 24 2015, In : Journal of Chromatography A. 1426, p. 64-68 5 p.

Research output: Contribution to journalArticle

2012

Single-molecule tools elucidate H2A.Z nucleosome composition

Chen, J., Miller, A., Kirchmaier, A. L. & Irudayaraj, J. M. K., Jun 15 2012, In : Journal of cell science. 125, 12, p. 2954-2964 11 p.

Research output: Contribution to journalArticle

2016

Epigenetic toxicity of trichloroethylene: A single-molecule perspective

Cui, Y., Choudhury, S. R. & Irudayaraj, J., 2016, In : Toxicology Research. 5, 2, p. 641-650 10 p.

Research output: Contribution to journalArticle

2014

Diversity of two forms of DNA methylation in the brain

Chen, Y., Damayanti, N. P., Irudayaraj, J., Dunn, K. & Zhou, F. C., 2014, In : Frontiers in Genetics. 5, MAR, Article 46.

Research output: Contribution to journalArticle

2013

Second harmonic generation correlation spectroscopy for single molecule experiments

Liu, J. & Irudayaraj, J., Nov 4 2013, In : Optics Express. 21, 22, p. 27063-27073 11 p.

Research output: Contribution to journalArticle

2015

The hypomethylating agent Decitabine causes a paradoxical increase in 5-hydroxymethylcytosine in human leukemia cells

Chowdhury, B., McGovern, A., Cui, Y., Choudhury, S. R., Cho, I. H., Cooper, B., Chevassut, T., Lossie, A. C. & Irudayaraj, J., Apr 22 2015, In : Scientific reports. 5, 9281.

Research output: Contribution to journalArticle

2017

Spin contrast of purcell-enhanced nitrogen-vacancy centers in diamonds

Bogdanov, S., Shalaginov, M. Y., Akimov, A. V., Lagutchev, A., Liu, J., Woods, D., Ferrera, M., Kapitanova, P., Belov, P., Irudayaraj, J. M. K., Boltasseva, A. & Shalaev, V. M., Jan 1 2017, CLEO: QELS_Fundamental Science, CLEO_QELS 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F42-CLEO_QELS 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bimodal counterpropagating-responsive sensing material for the detection of histamine

Wu, Z., Xu, E., Jiao, A., Jin, Z. & Irudayaraj, J., Jan 1 2017, In : RSC Advances. 7, 71, p. 44933-44944 12 p.

Research output: Contribution to journalArticle