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Author

  • Joseph Maria Kumar Irudayaraj
2015

Selective increase in subtelomeric DNA methylation: An epigenetic biomarker for malignant glioma

Choudhury, S. R., Cui, Y., Milton, J. R., Li, J. & Irudayaraj, J., Oct 7 2015, In : Clinical epigenetics. 7, 1, 107.

Research output: Contribution to journalArticle

2011

Single molecule In Vivo analysis of toll-like receptor 9 and CpG DNA interaction

Chen, J., Nag, S., Vidi, P. A. & Irudayaraj, J., Apr 11 2011, In : PloS one. 6, 4, e17991.

Research output: Contribution to journalArticle

2016

CRISPR-dCas9 mediated TET1 targeting for selective DNA demethylation at BRCA1 promoter

Choudhury, S. R., Cui, Y., Lubecka, K., Stefanska, B. & Irudayaraj, J., Jan 1 2016, In : Oncotarget. 7, 29, p. 46545-46556 12 p.

Research output: Contribution to journalArticle

Mitochondrial Dysfunction, Disruption of F-Actin Polymerization, and Transcriptomic Alterations in Zebrafish Larvae Exposed to Trichloroethylene

Wirbisky, S. E., Damayanti, N. P., Mahapatra, C. T., Sepúlveda, M. S., Irudayaraj, J. & Freeman, J. L., Feb 15 2016, In : Chemical Research in Toxicology. 29, 2, p. 169-179 11 p.

Research output: Contribution to journalArticle

2014

Diversity of two forms of DNA methylation in the brain

Chen, Y., Damayanti, N. P., Irudayaraj, J., Dunn, K. & Zhou, F. C., Jan 1 2014, In : Frontiers in Genetics. 5, MAR, Article 46.

Research output: Contribution to journalArticle

2013
2017

Highly sensitive fluorescence sensing of zearalenone using a novel aptasensor based on upconverting nanoparticles

Wu, Z., Xu, E., Chughtai, M. F. J., Jin, Z. & Irudayaraj, J. M. K., Sep 1 2017, In : Food Chemistry. 230, p. 673-680 8 p.

Research output: Contribution to journalArticle

Multiplex single-cell quantification of rare RNA transcripts from protoplasts in a model plant system

Kadam, U. S., Schulz, B. & Irudayaraj, J. M. K., Jun 2017, In : Plant Journal. 90, 6, p. 1187-1195 9 p.

Research output: Contribution to journalArticle

2018

Impedimetric detection of bacteria by using a microfluidic chip and silver nanoparticle based signal enhancement

Wang, R., Xu, Y., Sors, T., Irudayaraj, J., Ren, W. & Wang, R., Mar 1 2018, In : Microchimica Acta. 185, 3, 184.

Research output: Contribution to journalArticle

2017

An integrated microsystem with dielectrophoresis enrichment and impedance detection for detection of Escherichia coli

Wang, R., Xu, Y., Liu, H., Peng, J., Irudayaraj, J. M. K. & Cui, F., Jun 1 2017, In : Biomedical microdevices. 19, 2, 34.

Research output: Contribution to journalArticle

2015

A native chromatin extraction method based on salicylic acid coated magnetic nanoparticles and characterization of chromatin

Zhou, Z. & Irudayaraj, J., Feb 7 2015, In : Analyst. 140, 3, p. 938-944 7 p.

Research output: Contribution to journalArticle

Trichloroethylene sensing in water based on SERS with multifunctional Au/TiO2 core-shell nanocomposites

Ren, W., Zhou, Z. & Irudayaraj, J. M. K., Oct 7 2015, In : Analyst. 140, 19, p. 6625-6630 6 p.

Research output: Contribution to journalArticle

2016

Optical Clearing Delivers Ultrasensitive Hyperspectral Dark-Field Imaging for Single-Cell Evaluation

Cui, Y., Wang, X., Ren, W., Liu, J. & Irudayaraj, J., Mar 22 2016, In : ACS Nano. 10, 3, p. 3132-3143 12 p.

Research output: Contribution to journalArticle

2014

Second harmonic super-resolution microscopy for quantification of mRNA at single copy sensitivity

Liu, J., Cho, I. H., Cui, Y. & Irudayaraj, J., Dec 23 2014, In : ACS Nano. 8, 12, p. 12418-12427 10 p.

Research output: Contribution to journalArticle

Single-photon source based on NV center in nanodiamond coupled to TiN-based hyperbolic metamaterial

Shalaginov, M. Y., Vorobyov, V. V., Liu, J., Ferrera, M., Akimov, A. V., Lagutchev, A., Smolyaninov, A. N., Klimov, V. V., Irudayaraj, J., Kildishev, A. V., Boltasseva, A. & Shalaev, V. M., Jan 1 2014.

Research output: Contribution to conferencePaper

2013

Pattern recognition applied to spectroscopy: Conventional methods and future directions

Craig, A. P., Franca, A. S. & Irudayaraj, J., Mar 1 2013, Pattern Recognition: Practices, Perspectives and Challenges. Nova Science Publishers, Inc., p. 1-45 45 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Current technologies of electrochemical immunosensors: Perspective on signal amplification

Cho, I. H., Lee, J., Kim, J., Kang, M. S., Paik, J. K., Ku, S., Cho, H. M., Irudayaraj, J. & Kim, D. H., Jan 12 2018, In : Sensors (Switzerland). 18, 1, 207.

Research output: Contribution to journalReview article

2017

Electron spin contrast of Purcell-enhanced nitrogen-vacancy ensembles in nanodiamonds

Bogdanov, S., Shalaginov, M. Y., Akimov, A., Lagutchev, A. S., Kapitanova, P., Liu, J., Woods, D., Ferrera, M., Belov, P., Irudayaraj, J., Boltasseva, A. & Shalaev, V. M., Jul 25 2017, In : Physical Review B. 96, 3, 035146.

Research output: Contribution to journalArticle

2019

Epigenetic biomarker screening by FLIM-FRET for combination therapy in ER+ breast cancer

Liu, W., Cui, Y., Ren, W. & Irudayaraj, J., Jan 30 2019, In : Clinical epigenetics. 11, 1, 16.

Research output: Contribution to journalArticle

Modulation of gene silencing by Cdc7p via H4 K16 acetylation and phosphorylation of chromatin assembly factor CAF-1 in saccharomyces cerevisiae

Young, T. J., Cui, Y., Irudayaraj, J. & Kirchmaier, A. L., Apr 2019, In : Genetics. 211, 4, p. 1219-1237 19 p.

Research output: Contribution to journalArticle

2014

Targeted in vivo photodynamic therapy with epidermal growth factor receptor-specific peptide linked nanoparticles

Narsireddy, A., Vijayashree, K., Irudayaraj, J., Manorama, S. V. & Rao, N. M., Aug 25 2014, In : International Journal of Pharmaceutics. 471, 1-2, p. 421-429 9 p.

Research output: Contribution to journalArticle

2017

Optical microscopy and spectroscopy for epigenetic modifications in single living cells

Cui, Y. & Irudayaraj, J. M. K., Jan 1 2017, Methods in Pharmacology and Toxicology. Humana Press Inc., p. 135-154 20 p. (Methods in Pharmacology and Toxicology).

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

The hypomethylating agent Decitabine causes a paradoxical increase in 5-hydroxymethylcytosine in human leukemia cells

Chowdhury, B., McGovern, A., Cui, Y., Choudhury, S. R., Cho, I. H., Cooper, B., Chevassut, T., Lossie, A. C. & Irudayaraj, J., Apr 22 2015, In : Scientific reports. 5, 9281.

Research output: Contribution to journalArticle

2011

Innovative Composite Films of Chitosan, Methylcellulose, and Nanoparticles

Mura, S., Corrias, F., Stara, G., Piccinini, M., Secchi, N., Marongiu, D., Innocenzi, P., Irudayaraj, J. & Greppi, G. F., Sep 1 2011, In : Journal of food science. 76, 7, p. N54-N60

Research output: Contribution to journalArticle

2012
2013

New approaches in microbial pathogen detection

Kahyaoglu, L. N. & Irudayaraj, J., Jul 1 2013, Advances in Microbial Food Safety. Elsevier Ltd, Vol. 1. p. 202-226 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2020

Monomeric cohesin state revealed by live-cell single-molecule spectroscopy

Liu, W., Biton, E., Pathania, A., Matityahu, A., Irudayaraj, J. & Onn, I., Feb 5 2020, In : EMBO Reports. 21, 2, e48211.

Research output: Contribution to journalArticle

2016

Point-of-care test for cervical cancer in LMICs

Mohammed, S. I., Ren, W., Flowers, L., Rajwa, B., Chibwesha, C. J., Parham, G. P. & Irudayaraj, J. M. K., Jan 1 2016, In : Oncotarget. 7, 14, p. 18787-18797 11 p.

Research output: Contribution to journalArticle

2014

In-situ fluorescent immunomagnetic multiplex detection of foodborne pathogens in very low numbers

Cho, I. H., Mauer, L. & Irudayaraj, J., Jul 15 2014, In : Biosensors and Bioelectronics. 57, p. 143-148 6 p.

Research output: Contribution to journalArticle

2018
2017

Real-Time Multiplex Kinase Phosphorylation Sensors in Living Cells

Damayanti, N. P., Buno, K., Cui, Y., Voytik-Harbin, S. L., Pili, R., Freeman, J. & Irudayaraj, J. M. K., Aug 25 2017, In : ACS Sensors. 2, 8, p. 1225-1230 6 p.

Research output: Contribution to journalArticle

2015

Enhancement of single-photon emission from nitrogen-vacancy centers with TiN/(Al,Sc)N hyperbolic metamaterial

Shalaginov, M. Y., Vorobyov, V. V., Liu, J., Ferrera, M., Akimov, A. V., Lagutchev, A., Smolyaninov, A. N., Klimov, V. V., Irudayaraj, J., Kildishev, A. V., Boltasseva, A. & Shalaev, V. M., Jan 1 2015, In : Laser and Photonics Reviews. 9, 1, p. 120-127 8 p.

Research output: Contribution to journalArticle

2013

Fluorescence lifetime imaging of biosensor peptide phosphorylation in single live cells

Damayanti, N. P., Parker, L. L. & Irudayaraj, J. M. K., Apr 2 2013, In : Angewandte Chemie - International Edition. 52, 14, p. 3931-3934 4 p.

Research output: Contribution to journalArticle

2011

Nuclear targeting dynamics of gold nanoclusters for enhanced therapy of HER2 + breast cancer

Wang, Y., Chen, J. & Irudayaraj, J., Dec 27 2011, In : ACS Nano. 5, 12, p. 9718-9725 8 p.

Research output: Contribution to journalArticle

2014

Understanding the mechanical properties of DNA origami tiles and controlling the kinetics of their folding and unfolding reconfiguration

Chen, H., Weng, T. W., Riccitelli, M. M., Cui, Y., Irudayaraj, J. & Choi, J. H., May 14 2014, In : Journal of the American Chemical Society. 136, 19, p. 6995-7005 11 p.

Research output: Contribution to journalArticle

2013

A hybrid FLIM-elastic net platform for label free profiling of breast cancer

Damayanti, N. P., Craig, A. P. & Irudayaraj, J., Dec 7 2013, In : Analyst. 138, 23, p. 7127-7134 8 p.

Research output: Contribution to journalArticle

2017

Spin contrast of purcell-enhanced nitrogen-vacancy centers in diamonds

Bogdanov, S., Shalaginov, M. Y., Akimov, A. V., Lagutchev, A., Liu, J., Woods, D., Ferrera, M., Kapitanova, P., Belov, P., Irudayaraj, J. M. K., Boltasseva, A. & Shalaev, V. M., Jan 1 2017, CLEO: QELS_Fundamental Science, CLEO_QELS 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F42-CLEO_QELS 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Exploring the anti-quorum sensing activity of a d-limonene nanoemulsion for Escherichia coli O157:H7

Wang, R., Vega, P., Xu, Y., Chen, C. Y. & Irudayaraj, J., Jul 2018, In : Journal of Biomedical Materials Research - Part A. 106, 7, p. 1979-1986 8 p.

Research output: Contribution to journalArticle

Alpha Lead Oxide (α-PbO): A New 2D Material with Visible Light Sensitivity

Kumar, P., Liu, J., Ranjan, P., Hu, Y., Yamijala, S. S. R. K. C., Pati, S. K., Irudayaraj, J. & Cheng, G. J., Mar 22 2018, In : Small. 14, 12, 1703346.

Research output: Contribution to journalArticle

2016

Ultrasensitive detection of microbial cells using magnetic focus enhanced lateral flow sensors

Ren, W., Cho, I. H., Zhou, Z. & Irudayaraj, J., Jan 1 2016, In : Chemical Communications. 52, 27, p. 4930-4933 4 p.

Research output: Contribution to journalArticle

2011

Protein-directed reduction of graphene oxide and intracellular imaging

Guo, C., Book-Newell, B. & Irudayaraj, J., Dec 21 2011, In : Chemical Communications. 47, 47, p. 12658-12660 3 p.

Research output: Contribution to journalArticle

2015

Decitabine nanoconjugate sensitizes human glioblastoma cells to temozolomide

Cui, Y., Naz, A., Thompson, D. H. & Irudayaraj, J., Apr 6 2015, In : Molecular Pharmaceutics. 12, 4, p. 1279-1288 10 p.

Research output: Contribution to journalArticle

2013

Real-time dynamics of methyl-CpG-binding domain protein 3 and its role in DNA demethylation by fluorescence correlation spectroscopy

Cui, Y., Cho, I. H., Chowdhury, B. & Irudayaraj, J., Oct 2013, In : Epigenetics. 8, 10, p. 1089-1100 12 p.

Research output: Contribution to journalArticle

2012

Single-molecule tools elucidate H2A.Z nucleosome composition

Chen, J., Miller, A., Kirchmaier, A. L. & Irudayaraj, J. M. K., Jun 15 2012, In : Journal of cell science. 125, 12, p. 2954-2964 11 p.

Research output: Contribution to journalArticle

2016

Regulatory landscape and clinical implication of MBD3 in human malignant glioma

Cui, Y., Li, J., Weng, L., Wirbisky, S. E., Freeman, J. L., Liu, J., Liu, Q., Yuan, X. & Irudayaraj, J., Jan 1 2016, In : Oncotarget. 7, 49, p. 81698-81714 17 p.

Research output: Contribution to journalArticle

2014

Quantifying the local density of optical states of nanorods by fluorescence lifetime imaging

Liu, J., Jiang, X., Ishii, S., Shalaev, V. & Irudayaraj, J., Jun 2014, In : New Journal of Physics. 16, 063069.

Research output: Contribution to journalArticle

2011

Surface-enhanced Raman imaging of intracellular bioreduction of chromate in Shewanella oneidensis

Ravindranath, S. P., Henne, K. L., Thompson, D. K. & Irudayaraj, J., Mar 7 2011, In : PloS one. 6, 2, e16634.

Research output: Contribution to journalArticle

2013

Gene expression analysis using conventional and imaging methods

Kadam, U. S., Lossie, A. C., Schulz, B. & Irudayaraj, J., Jan 1 2013, DNA and RNA Nanobiotechnologies in Medicine: Diagnosis and Treatment of Diseases. Springer Berlin Heidelberg, p. 141-162 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lateral-flow enzyme immunoconcentration for rapid detection of Listeria monocytogenes

Cho, I. H. & Irudayaraj, J., Apr 1 2013, In : Analytical and bioanalytical chemistry. 405, 10, p. 3313-3319 7 p.

Research output: Contribution to journalArticle