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  Transcription factor CCAAT enhancer-binding protein β (C/EBPβ) regulates the formation of a unique extracellular matrix that controls uterine stromal differentiation and embryo implantation

  Ramathal, C., Wang, W., Hunt, E., Bagchi, I. C. & Bagchi, M. K., Jun 3 2011, In: Journal of Biological Chemistry. 286, 22, p. 19860-19871 12 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription factor EB (TFEB)-mediated autophagy protects bovine mammary epithelial cells against H₂O₂-induced oxidative damage in vitro

  Sun, X., Chang, R., Tang, Y., Luo, S., Jiang, C., Jia, H., Xu, Q., Dong, Z., Liang, Y., Loor, J. J. & Xu, C., Dec 2021, In: Journal of Animal Science and Biotechnology. 12, 1, 35.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription factor IID in the Archaea: Sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes

  Marsh, T. L., Reich, C. I., Whitelock, R. B. & Olsen, G. J., May 10 1994, In: Proceedings of the National Academy of Sciences of the United States of America. 91, 10, p. 4180-4184 5 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription Factor-MicroRNA-Target Gene Networks Associated with Ovarian Cancer Survival and Recurrence

  Delfino, K. R. & Rodriguez-Zas, S. L., Mar 12 2013, In: PloS one. 8, 3, e58608.

  Research output: Contribution to journal › Article › peer-review

• Transcription Factor RFX2 Is a Key Regulator of Mouse Spermiogenesis

  Wu, Y., Hu, X., Li, Z., Wang, M., Li, S., Wang, X., Lin, X., Liao, S., Zhang, Z., Feng, X., Wang, S., Cui, X., Wang, Y., Gao, F., Hess, R. A. & Han, C., Feb 8 2016, In: Scientific reports. 6, 20435.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription factor Runx1 recruits the polyomavirus replication origin to replication factories

  Murakami, Y., Chen, L. F., Sanechika, N., Kohzaki, H. & Ito, Y., Apr 1 2007, In: Journal of Cellular Biochemistry. 100, 5, p. 1313-1323 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling

  Shamimuzzaman, M. & Vodkin, L., Nov 16 2014, In: Functional and Integrative Genomics. 14, 4, p. 683-696 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription Factor Tfe3 Directly Regulates Pgc-1alpha in Muscle

  Salma, N., Song, J. S., Arany, Z. & Fisher, D. E., Oct 1 2015, In: Journal of Cellular Physiology. 230, 10, p. 2330-2336 7 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription from the pseudorabies virus genome during latent infection

  Rock, D. L., Hagemoser, W. A., Osorio, F. A. & McAllister, H. A., Mar 1988, In: Archives of Virology. 98, 1-2, p. 99-106 8 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription-independent functions of an RNA polymerase II subunit, Rpb2, during genome rearrangement in the ciliate, Oxytricha trifallax

  Khurana, J. S., Wang, X., Chen, X., Perlman, D. H. & Landweber, L. F., Jul 2014, In: Genetics. 197, 3, p. 839-849 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription Initiation in a Single-Subunit RNA Polymerase Proceeds through DNA Scrunching and Rotation of the N-Terminal Subdomains

  Tang, G. Q., Roy, R., Ha, T. & Patel, S. S., Jun 5 2008, In: Molecular cell. 30, 5, p. 567-577 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription of a lepidopteran cytochrome P450 promoter is modulated by multiple elements in its 5′ UTR and repressed by 20-hydroxyecdysone

  Brown, R. P., Berenbaum, M. R. & Schuler, M. A., Aug 2004, In: Insect Molecular Biology. 13, 4, p. 337-347 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription of the human folylpoly-γ-glutamate synthetase gene

  Freemantle, S. J. & Moran, R. G., Oct 3 1997, In: Journal of Biological Chemistry. 272, 40, p. 25373-25379 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription of the testis-specific mouse protamine 2 gene in a homologous in vitro transcription system

  Bunick, D., Johnson, P. A., Johnson, T. R. & Hecht, N. B., 1990, In: Proceedings of the National Academy of Sciences of the United States of America. 87, 3, p. 891-895 5 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription pattern of p53-targeted DNA repair genes in the hypoxia-tolerant subterranean mole rat Spalax

  Shams, I., Malik, A., Manov, I., Joel, A., Band, M. & Avivi, A., Apr 12 2013, In: Journal of Molecular Biology. 425, 7, p. 1111-1118 8 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription profiling of soybean nodulation by Bradyrhizobium japonicum

  Brechenmacher, L., Kim, M. Y., Benitez, M., Li, M., Joshi, T., Calla, B., Mei, P. L., Libault, M., Vodkin, L. O., Xu, D., Lee, S. H., Clough, S. J. & Stacey, G., May 2008, In: Molecular Plant-Microbe Interactions. 21, 5, p. 631-645 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription Regulation and Genome Rewiring Governing Sensitivity and Resistance to FOXM1 Inhibition in Breast Cancer

  Ziegler, Y., Guillen, V. S., Kim, S. H., Katzenellenbogen, J. A. & Katzenellenbogen, B. S., Dec 1 2021, In: Cancers. 13, 24, 6282.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription termination at the thr attenuator: Evidence that the adenine residues upstream of the stem and loop structure are not required for termination

  Yang, M. T., Scott, H. B. & Gardner, J. F., Oct 6 1995, In: Journal of Biological Chemistry. 270, 40, p. 23330-23336 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription termination by bacteriophage T7 RNA polymerase at Rho-independent terminators

  Jeng, S. T., Gardner, J. F. & Gumport, R. I., 1990, In: Journal of Biological Chemistry. 265, 7, p. 3823-3830 8 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription termination directed by heteroduplex thr attenuator templates. Evidence that the transcript stem and loop structure is the termination signal

  Yang, M. T. & Gardner, J. F., 1989, In: Journal of Biological Chemistry. 264, 5, p. 2634-2639 6 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription termination in vitro by bacteriophage T7 RNA polymerase. The role of sequence elements within and surrounding a ρ-independent transcription terminator

  Jeng, S. T., Gardner, J. F. & Gumport, R. I., 1992, In: Journal of Biological Chemistry. 267, 27, p. 19306-19312 7 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription upregulation via force-induced direct stretching of chromatin

  Tajik, A., Zhang, Y., Wei, F., Sun, J., Jia, Q., Zhou, W., Singh, R., Khanna, N., Belmont, A. S. & Wang, N., Dec 1 2016, In: Nature Materials. 15, 12, p. 1287-1296 10 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome analyses shed light on floral organ morphogenesis and bract color formation in Bougainvillea

  Zhang, W., Zhou, Q., Lin, J., Ma, X., Dong, F., Yan, H., Zhong, W., Lu, Y., Yao, Y., Shen, X., Huang, L., Zhang, W. & Ming, R., Dec 2022, In: BMC Plant Biology. 22, 1, 97.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome analyses suggest a disturbance of iron homeostasis in soybean leaves during white mould disease establishment

  Calla, B., Blahut-Beatty, L., Koziol, L., Simmonds, D. H. & Clough, S. J., Aug 2014, In: Molecular Plant Pathology. 15, 6, p. 576-588 13 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome analysis of egg viability in rainbow trout, Oncorhynchus mykiss

  Ma, H., Martin, K., Dixon, D., Hernandez, A. G. & Weber, G. M., Apr 27 2019, In: BMC genomics. 20, 1, 319.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome analysis of resistant and susceptible genotypes of Glycine tomentella during Phakopsora pachyrhizi infection reveals novel rust resistance genes

  Soria-Guerra, R. E., Rosales-Mendoza, S., Chang, S., Haudenshield, J. S., Padmanaban, A., Rodriguez-Zas, S., Hartman, G. L., Ghabrial, S. A. & Korban, S. S., May 2010, In: Theoretical and Applied Genetics. 120, 7, p. 1315-1333 19 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome analysis of Spartina pectinata in response to freezing stress

  Nah, G., Lee, M., Kim, D. S., Rayburn, A. L., Voigt, T. & Lee, D. K., Mar 1 2016, In: PloS one. 11, 3, e0152294.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome analysis of the cowpea weevil bruchid: Identification of putative proteinases and α-amylases associated with food breakdown

  Pedra, J. H. F., Brandt, A., Westerman, R., Lobo, N., Li, H. M., Romero-Severson, J., Murdock, L. L. & Pittendrigh, B. R., Aug 2003, In: Insect Molecular Biology. 12, 4, p. 405-412 8 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome analysis of the effects of fasting caecotrophy on hepatic lipid metabolism in New Zealand rabbits

  Wang, Y., Xu, H., Sun, G., Xue, M., Sun, S., Huang, T., Zhou, J., Loor, J. J. & Li, M., Sep 2019, In: Animals. 9, 9, 648.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome analysis of the exocarp of apple fruit identifies light-induced genes involved in red color pigmentation

  Vimolmangkang, S., Zheng, D., Han, Y., Khan, M. A., Soria-Guerra, R. E. & Korban, S. S., Jan 15 2014, In: Gene. 534, 1, p. 78-87 10 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome analysis of the spalax hypoxia survival response includes suppression of apoptosis and tight control of angiogenesis

  Malik, A., Korol, A., Weber, M., Hankeln, T., Avivi, A. & Band, M., Nov 13 2012, In: BMC genomics. 13, 1, 615.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome and metabolome analyses of glucosinolates in two broccoli cultivars following jasmonate treatment for the induction of glucosinolate defense to Trichoplusia ni (Hübner)

  Ku, K. M., Becker, T. M. & Juvik, J. A., Jul 15 2016, In: International journal of molecular sciences. 17, 7, 1135.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome changes in the phenylpropanoid pathway of Glycine max in response to Pseudomonas syringae infection

  Zabala, G., Zou, J., Tuteja, J., Gonzalez, D. O., Clough, S. J. & Vodkin, L. O., Nov 3 2006, In: BMC Plant Biology. 6, 26.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress

  Zhang, Q., Cai, M., Yu, X., Wang, L., Guo, C., Ming, R. & Zhang, J., Aug 1 2017, In: Tree Genetics and Genomes. 13, 4, 78.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome-Enabled Network Inference Revealed the GmCOL1 Feed-Forward Loop and Its Roles in Photoperiodic Flowering of Soybean

  Wu, F., Kang, X., Wang, M., Haider, W., Price, W. B., Hajek, B. & Hanzawa, Y., Nov 8 2019, In: Frontiers in Plant Science. 10, 1221.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome identification of putative genes involved in protein catabolism and innate immune response in human body louse (Pediculicidae: Pediculus humanus)

  Pedra, J. H. F., Brandt, A., Li, H. M., Westerman, R., Romero-Severson, J., Pollack, R. J., Murdock, L. L., Pittendrigh, B. R. & Collins, F. H., Nov 2003, In: Insect Biochemistry and Molecular Biology. 33, 11, p. 1135-1143 9 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome of the egg parasitoid Fopius arisanus: An important biocontrol tool for Tephritid fruit fly suppression

  Calla, B., Sim, S. B., Hall, B., DeRego, T., Liang, G. H. & Geib, S. M., 2015, In: GigaScience. 4, 1, 36.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome profile and cytogenetic analysis of immortalized neuronally restricted progenitor cells derived from the porcine olfactory bulb

  Uebing-Czipura, A. U., Dawson, H. D., Rutherford, M. S. & Scherba, G., Oct 2009, In: Animal Biotechnology. 20, 4, p. 186-215 30 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome profiles of whole blood in Italian Holstein and Italian Simmental lactating cows diverging for genetic merit for milk protein

  Sandri, M., Stefanon, B. & Loor, J. J., Sep 1 2015, In: Journal of Dairy Science. 98, 9, p. 6119-6127 9 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome profiling and genome-wide association studies reveal Gsts and other defense genes involved in multiple signaling pathways induced by herbicide safener in grain sorghum

  Baek, Y. S., Goodrich, L. V., Brown, P. J., James, B. T., Moose, S. P., Lambert, K. N. & Riechers, D. E., Mar 7 2019, In: Frontiers in Plant Science. 10, 192.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome profiling of the small intestinal epithelium in germfree versus conventional piglets

  Chowdhury, S. R., King, D. E., Willing, B. P., Band, M. R., Beever, J. E., Lane, A. B., Loor, J. J., Marini, J. C., Rund, L. A., Schook, L. B., Van Kessel, A. G. & Rex, H. R., Jul 5 2007, In: BMC genomics. 8, 215.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome profiling revealed stress-induced and disease resistance genes up-regulated in PRSV resistant transgenic papaya

  Fang, J., Lin, A., Qiu, W., Cai, H., Umar, M., Chen, R. & Ming, R., Jun 16 2016, In: Frontiers in Plant Science. 7, JUNE2016, 855.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome Profiling Reveals Molecular Players in Early Soybean–Sclerotinia sclerotiorum Interaction

  Wei, W., Wu, X., Blahut-Beatty, L., Simmonds, D. H. & Clough, S. J., Aug 2022, In: Phytopathology. 112, 8, p. 1739-1752 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome response to glyphosate in sensitive and resistant soybean

  Zhu, J., Patzoldt, W. L., Shealy, R. T., Vodkin, L. O., Clough, S. J. & Tranel, P. J., Aug 13 2008, In: Journal of Agricultural and Food Chemistry. 56, 15, p. 6355-6363 9 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome sequencing, and rapid development and application of snp markers for the legume pod borer maruca vitrata (lepidoptera: Crambidae)

  Margam, V. M., Coates, B. S., Bayles, D. O., Hellmich, R. L., Agunbiade, T., Seufferheld, M. J., Sun, W., Kroemer, J. A., Ba, M. N., Binso-Dabire, C. L., Baoua, I., Ishiyaku, M. F., Covas, F. G., Srinivasan, R., Armstrong, J., Murdock, L. L. & Pittendrigh, B. R., 2011, In: PloS one. 6, 7, e21388.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: Utility and potential for the discovery of novel evolutionary patterns

  Malik, A., Korol, A., Hübner, S., Hernandez, A. G., Thimmapuram, J., Ali, S., Glaser, F., Paz, A., Avivi, A. & Band, M., 2011, In: PloS one. 6, 8, e21227.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome-Wide Analysis Reveals the Role of PPAR γ Controlling the Lipid Metabolism in Goat Mammary Epithelial Cells

  Shi, H., Zhao, W., Zhang, C., Shahzad, K., Luo, J. & Loor, J. J., 2016, In: PPAR Research. 2016, 9195680.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptomic Analyses of Black Women in Neighborhoods with High Levels of Violence

  Lee, M. J., Rittschof, C. C., Greenlee, A. J., Turi, K. N., Rodriguez-Zas, S. L., Robinson, G. E., Cole, S. W. & Mendenhall, R., May 2021, In: Psychoneuroendocrinology. 127, 105174.

  Research output: Contribution to journal › Article › peer-review

• Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic bacteroidetes

  Dodd, D., Moon, Y. H., Swaminathan, K., Mackie, R. I. & Cann, I. K. O., Sep 24 2010, In: Journal of Biological Chemistry. 285, 39, p. 30261-30273 13 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptomic analysis across liver diseases reveals disease-modulating activation of constitutive androstane receptor in cholestasis

  Mathur, B., Arif, W., Patton, M. E., Faiyaz, R., Liu, J., Yeh, J., Harpavat, S., Schoonjans, K., Kalsotra, A., Wheatley, A. M. & Anakk, S., Oct 2020, In: JHEP Reports. 2, 5, 100140.

  Research output: Contribution to journal › Article › peer-review

  Open Access