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• 2023

  Acknowledgment to reviewers of Journal of Translational Genetics and Genomics in 2022

  Wang, N., Tsuruta, Y., Akiyama, M., van Balkom, I., Piane, M., LaRocque, J., Kanaan, M., Palau, F., Adams, D. J., Francastel, C., Natale, P., Goel, A., Mana, M., Pasmant, E., Williams, M., Christensen, K., Chen, S., Modi, Y. S., Jin, Z. B., Akiyama, M., & 65 othersMartin, L. J., Andre, S., Lang, J., Chang, X., Chun, J., Corso, G., Claudia, S., Sun, Z., Vilne, B., Pratt, V., Dong, S., Adam, M. P., Shen, Y., Komhoff, M., Anant, S., Hou, L., Williamson, V., Djurasevic, S., Frye, R. E., Stoccoro, A., Wang, X., Yu, T. M., Kroese, M., Laura, M., Gu, B., Tada, H., Schwartz, P. J., Shen, L., Lam, F. C., Gu, S., Ren, X., Zhong, S., Lian, Q., Soreq, H., Zhang, R., Pagano, G., Hazrati, L. N., Sobacchi, C., Spinelli, L., Sawyer, S. L., Pareyson, D., Gu, M. M., Cheng, L., Walker, J. A., Valerie, G., Dwyer, A., Schulze-Bahr, E., Li, H., van Bortle, K., Silva, A. S., Hasani-Ranjbar, S., Ishmael, F. T., Sharma, S., Cantalupo, G., Kittel-Schneider, S., Vallat, J. M., Osmond, M., Bocklage, T. J., Martínez-Iglesias, O., Raciti, L., Kaufman, E. S., Giusti-Rodríguez, P., Bögershausen, N., Campuzano, O. & Kreiling, J., 2023, In: Journal of Translational Genetics and Genomics. 7, 1, p. 1-2 2 p.

  Research output: Contribution to journal › Editorial › peer-review

  Open Access

• A Close Look into the Calibration of Pre-trained Language Models

  Chen, Y., Yuan, L., Cui, G., Liu, Z. & Ji, H., 2023, Long Papers. Association for Computational Linguistics (ACL), p. 1343-1367 25 p. (Proceedings of the Annual Meeting of the Association for Computational Linguistics; vol. 1).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A close quasar pair in a disk–disk galaxy merger at z = 2.17

  Chen, Y., Liu, X., Foord, A., Shen, Y., Oguri, M., Chen, N., Di Matteo, T., Holgado, M., Hwang, H. & Zakamska, N., Apr 6 2023, In: Nature. 616, 7955, p. 45-49 5 p.

  Research output: Contribution to journal › Article › peer-review

• A Closer Look at the Evolution of Supercooled Cloud Droplet Temperature and Lifetime in Different Environmental Conditions with Implications for Ice Nucleation in the Evaporating Regions of Clouds

  Roy, P., Rauber, R. M. & Di Girolamo, L., Oct 2023, In: Journal of the Atmospheric Sciences. 80, 10, p. 2481-2501 21 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A Combinatorial Proof for the Dowry Problem

  Liu, X., Milenkovic, O. & Moustakides, G. V., 2023, 2023 IEEE Information Theory Workshop, ITW 2023. Institute of Electrical and Electronics Engineers Inc., p. 538-543 6 p. (2023 IEEE Information Theory Workshop, ITW 2023).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A Combinatorial Regulatory Platform Determines Expression of RNA Polymerase III Subunit RPC7α (POLR3G) in Cancer

  Cheng, R., Zhou, S., K C, R., Lizarazo, S., Mouli, L., Jayanth, A., Liu, Q. & Van Bortle, K., Oct 2023, In: Cancers. 15, 20, 4995.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A combined DHA-rich fish oil and cocoa flavanols intervention does not improve cognition or brain structure in older adults with memory complaints: results from the CANN randomized, controlled parallel-design study

  Vauzour, D., Scholey, A., White, D. J., Cohen, N. J., Cassidy, A., Gillings, R., Irvine, M. A., Kay, C. D., Kim, M., King, R., Legido-Quigley, C., Potter, J. F., Schwarb, H. & Minihane, A. M., Aug 2023, In: American Journal of Clinical Nutrition. 118, 2, p. 369-381 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A comment-driven evidence appraisal approach to promoting research findings into practice when only uncertain evidence is available

  Wang, S., Kilicoglu, H. & Du, J., Dec 2023, In: Health Research Policy and Systems. 21, 1, 25.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A common modular design of nervous systems originating in soft-bodied invertebrates

  Gribkova, E. D., Lee, C. A., Brown, J. W., Cui, J., Liu, Y., Norekian, T. & Gillette, R., 2023, In: Frontiers in Physiology. 14, 1263453.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A Comparative Analysis Between SciTokens, Verifiable Credentials, and Smart Contracts: Novel Approaches for Authentication and Secure Access to Scientific Data

  Hossain Faruk, M. J., Saha, B. & Basney, J., Jul 23 2023, PEARC 2023 - Computing for the common good: Practice and Experience in Advanced Research Computing. Association for Computing Machinery, p. 302-305 4 p. (PEARC 2023 - Computing for the common good: Practice and Experience in Advanced Research Computing).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

• A comparative study of seismic tomography models of Southwest China

  Zhang, X., Song, X. & Wang, F., Feb 2023, In: Earthquake Science. 36, 1, p. 15-39 25 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A comparison of traditional and machine learning corn yield models using hyperspectral UAS and Landsat imagery

  Burglewski, N. M., Ketterings, Q. M., Shajahan, S. & Van Aardt, J., 2023, Algorithms, Technologies, and Applications for Multispectral and Hyperspectral Imaging XXIX. Velez-Reyes, M. & Messinger, D. W. (eds.). SPIE, 125190B. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 12519).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A Comparison Study of Predictive Models for Electricity Demand in a Diverse Urban Environment

  Pesantez, J. E., Li, B., Lee, C., Zhao, Z., Butala, M. & Stillwell, A. S., Nov 15 2023, In: Energy. 283, 129142.

  Research output: Contribution to journal › Article › peer-review

• A Complementary Pivot Algorithm for Competitive Allocation of a Mixed Manna

  Chaudhury, B. R., Garg, J., McGlaughlin, P. & Mehta, R., Aug 2023, In: Mathematics of Operations Research. 48, 3, p. 1630-1656 27 p.

  Research output: Contribution to journal › Article › peer-review

• A complete gap-free diploid genome in Saccharum complex and the genomic footprints of evolution in the highly polyploid Saccharum genus

  Wang, T., Wang, B., Hua, X., Tang, H., Zhang, Z., Gao, R., Qi, Y., Zhang, Q., Wang, G., Yu, Z., Huang, Y., Zhang, Z., Mei, J., Wang, Y., Zhang, Y., Li, Y., Meng, X., Wang, Y., Pan, H., Chen, S., & 11 othersLi, Z., Shi, H., Liu, X., Deng, Z., Chen, B., Zhang, M., Gu, L., Wang, J., Ming, R., Yao, W. & Zhang, J., Apr 2023, In: Nature plants. 9, 4, p. 554-571 18 p.

  Research output: Contribution to journal › Article › peer-review

• A compound decision approach to covariance matrix estimation

  Xin, H. & Zhao, S. D., Jun 2023, In: Biometrics. 79, 2, p. 1201-1212 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A comprehensive assessment of in situ and remote sensing soil moisture data assimilation in the APSIM model for improving agricultural forecasting across the US Midwest

  Kivi, M., Vergopolan, N. & Dokoohaki, H., Mar 16 2023, In: Hydrology and Earth System Sciences. 27, 5, p. 1173-1199 27 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A Comprehensive Comparison for Battery Cathode Leaching Processes

  Liu, Z., Sederholm, J. G., Lan, K. W., Hatzell, M. C., Perry, N. H., Miljkovic, N., Braun, P. V., Li, Y. & Wang, P., 2023, 2023 IEEE Transportation Electrification Conference and Expo, ITEC 2023. Institute of Electrical and Electronics Engineers Inc., (2023 IEEE Transportation Electrification Conference and Expo, ITEC 2023).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A computationally designed ACE2 decoy has broad efficacy against SARS-CoV-2 omicron variants and related viruses in vitro and in vivo

  Havranek, B., Lindsey, G. W., Higuchi, Y., Itoh, Y., Suzuki, T., Okamoto, T., Hoshino, A., Procko, E. & Islam, S. M., Dec 2023, In: Communications biology. 6, 1, 513.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A computational study for understanding the impact of p120-catenin on the cis-dimerization of cadherin

  Su, Z., Vu, V. H., Leckband, D. E. & Wu, Y., Sep 26 2023, (E-pub ahead of print) In: Journal of Molecular Cell Biology.

  Research output: Contribution to journal › Article › peer-review

• A Conceptual Framework for the Design of Digital Repository Interfaces Supporting Digital Content Reuse Assessment

  Shiri, A., Woolcott, L., Thompson, S., Kenfield, A. S., Kelly, E. J., Chapman, J. & Jefferson, D., 2023, Proceedings - 2023 ACM/IEEE Joint Conference on Digital Libraries, JCDL 2023. Institute of Electrical and Electronics Engineers Inc., p. 30-34 5 p. (Proceedings of the ACM/IEEE Joint Conference on Digital Libraries; vol. 2023-June).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A Content Analysis of Self-Reported Financial Relationships in Biomedical Research

  Graham, S. S., Sharma, N., Karnes, M. S., Majdik, Z. P., Barbour, J. B. & Rousseau, J. F., 2023, In: AJOB Empirical Bioethics. 14, 2, p. 91-98 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A Continuous Representation Of Switching Linear Dynamic Systems For Accurate Tracking

  Karimi, P., Naumer, H. & Kamalabadi, F., 2023, Proceedings of the 22nd IEEE Statistical Signal Processing Workshop, SSP 2023. IEEE Computer Society, p. 339-343 5 p. (IEEE Workshop on Statistical Signal Processing Proceedings; vol. 2023-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A Conversation with Alan Weinstein

  Bursztyn, H. & Fernandes, R. L., Jan 2023, In: Notices of the American Mathematical Society. 70, 1, p. 125-133 9 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

• Acoustically-driven Electromagnetic Antennas Using Piezoelectric Material

  Gong, S., Hassanien, A. E., Breen, M. G. & Li, M-H., Feb 28 2023, U.S. Patent No. 11594816

  Research output: Patent

• Acoustic modes of self-excited cavitating waterjets on rock erosion

  Cai, T., Chamorro, L. P., Ma, F., Zhu, Q. & Han, J., Jun 1 2023, In: Physics of fluids. 35, 6, 063322.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Acoustic-Perceptual Correlates of Voice Among Steam Train Engineers: Effects of Noise and Hearing Protection

  Anand, S., Gutierrez, D. & Bottalico, P., May 2023, In: Journal of Voice. 37, 3, p. 366-373 8 p.

  Research output: Contribution to journal › Article › peer-review

• Acoustic-phonon limited mobility in periodically modulated quantum wires

  Stacker, J. E., Leburton, J. P., Noguchi, H. & Sakaki, H., Aug 31 2023, Physical Models for Quantum Wires, Nanotubes, and Nanoribbons. Pan Stanford Publishing Pte. Ltd., p. 181-196 16 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• A Critical Analysis of State-Level Policies Impacting Racialized Emergent Bilinguals Suspected or Labeled as Dis/abled

  Soto-Boykin, X., Brea-Spahn, M. R., Perez, S. & McKenna, M., Jul 5 2023, In: Language, Speech, and Hearing Services in Schools. 54, 3, p. 729-745 17 p.

  Research output: Contribution to journal › Review article › peer-review

• A critical analysis of the current state of virus taxonomy

  Caetano-Anollés, G., Claverie, J. M. & Nasir, A., 2023, In: Frontiers in Microbiology. 14, 1240993.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• A critical review of social media research in sensory-consumer science

  Hutchings, S. C., Dixit, Y., Al-Sarayreh, M., Torrico, D. D., Realini, C. E., Jaeger, S. R. & Reis, M. M., Mar 2023, In: Food Research International. 165, 112494.

  Research output: Contribution to journal › Review article › peer-review

• A critical review of UAS-based aerial photography and photogrammetry of Cahokia's Grand Plaza

  Lambert, J. M. & Jacob Skousen, B., Feb 2023, In: Journal of Archaeological Science: Reports. 47, 103789.

  Research output: Contribution to journal › Article › peer-review

• A critical study of the nonlinear rheological properties in major classes of foods using the Sequence of Physical Processes (SPP) method and the Fourier Transform Coupled with Chebyshev Decomposition (FTC) method

  Le, A. N. M., Erturk, M. Y., Shim, Y. H., Rogers, S. A. & Kokini, J., Dec 2023, In: Food Research International. 174, 113587.

  Research output: Contribution to journal › Article › peer-review

• A Cross-National Study of Fear Appeal Messages in YouTube Trending Videos About COVID-19

  Ng, Y. M. M., Feb 21 2023, (E-pub ahead of print) In: American Behavioral Scientist.

  Research output: Contribution to journal › Article › peer-review

• A Crowd-AI Collaborative Duo Relational Graph Learning Framework towards Social Impact Aware Photo Classification

  Zhang, Y., Kou, Z., Shang, L., Zeng, H., Yue, Z. & Wang, D., Jun 27 2023, AAAI-23 Special Tracks. Williams, B., Chen, Y. & Neville, J. (eds.). American Association for Artificial Intelligence (AAAI) Press, p. 14637-14645 9 p. (Proceedings of the 37th AAAI Conference on Artificial Intelligence, AAAI 2023; vol. 37).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A crowd-AI dynamic neural network hyperparameter optimization approach for image-driven social sensing applications

  Zhang, Y., Zong, R., Shang, L. & Wang, D., Oct 25 2023, In: Knowledge-Based Systems. 278, 110864.

  Research output: Contribution to journal › Article › peer-review

• Activated Differences: A Qualitative Study of How and When Differences Make a Difference on Diverse Teams

  Ruge-Jones, L., Barley, W. C., Wilson, S. R., MacSwain, C., Johnson, L., Everett, J. & Poole, M. S., Nov 2023, In: Management Communication Quarterly. 37, 4, p. 846-877 32 p.

  Research output: Contribution to journal › Article › peer-review

• Activation mechanism of the human Smoothened receptor

  Bansal, P. D., Dutta, S. & Shukla, D., Apr 4 2023, In: Biophysical journal. 122, 7, p. 1400-1413 14 p.

  Research output: Contribution to journal › Article › peer-review

• Activation of PINK1-mediated mitophagy protects bovine mammary epithelial cells against lipopolysaccharide-induced mitochondrial and inflammatory damage in vitro

  Chang, R., Tang, Y., Jia, H., Dong, Z., Gao, S., Song, Q., Dong, H., Xu, Q., Jiang, Q., Loor, J. J., Sun, X. & Xu, C., Jan 2023, In: Free Radical Biology and Medicine. 194, p. 172-183 12 p.

  Research output: Contribution to journal › Article › peer-review

• Activators Of The Unfolded Protein Response

  Hergenrother, P. J., Shapiro, D. J. & Boudreau, M. W., Feb 21 2023, U.S. Patent No. 11584718

  Research output: Patent

• Active Control of Energy Transfer in Plasmonic Nanorod-Polyaniline Hybrids

  Jones, A., Searles, E. K., Mayer, M., Hoffmann, M., Gross, N., Oh, H., Fery, A., Link, S. & Landes, C. F., Sep 14 2023, In: Journal of Physical Chemistry Letters. 14, 36, p. 8235-8243 9 p.

  Research output: Contribution to journal › Article › peer-review

• Active Learning of the Conformational Ensemble of Proteins Using Maximum Entropy VAMPNets

  Kleiman, D. E. & Shukla, D., Jul 25 2023, In: Journal of Chemical Theory and Computation. 19, 14, p. 4377-4388 12 p.

  Research output: Contribution to journal › Article › peer-review

• Active sites of atomically dispersed Pt supported on Gd-doped ceria with improved low temperature performance for CO oxidation

  Li, Y., Wang, H., Song, H., Rui, N., Kottwitz, M., Senanayake, S. D., Nuzzo, R. G., Wu, Z., Jiang, D-E. & Frenkel, A. I., Oct 17 2023, (E-pub ahead of print) In: Chemical Science.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Activity-based bioluminescence probes for in vivo sensing applications

  Yadav, A. K. & Chan, J., Jun 2023, In: Current Opinion in Chemical Biology. 74, 102310.

  Research output: Contribution to journal › Review article › peer-review

• Activity-Based Photoacoustic Probes for Detection of Disease Biomarkers beyond Oncology

  Lee, M. C., Landers, K. & Chan, J., Jun 21 2023, In: ACS Bio and Med Chem Au. 3, 3, p. 223-232 10 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• Acto: Automatic End-to-End Testing for Operation Correctness of Cloud System Management

  Gu, J. T., Sun, X., Zhang, W., Jiang, Y., Wang, C., Vaziri, M., Legunsen, O. & Xu, T., Oct 23 2023, SOSP 2023 - Proceedings of the 29th ACM Symposium on Operating Systems Principles. Association for Computing Machinery, p. 96-112 17 p. (SOSP 2023 - Proceedings of the 29th ACM Symposium on Operating Systems Principles).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• AcTrak: Controlling a Steerable Surveillance Camera using Reinforcement Learning

  Fahim, A., Papalexakis, E., Krishnamurthy, S. V., Roy Chowdhury, A. K., Kaplan, L. & Abdelzaher, T., Apr 19 2023, In: ACM Transactions on Cyber-Physical Systems. 7, 2, 14.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Acute phase protein concentrations following serial procaine penicillin G injections in horses

  Gordon, D. L., Foreman, J. H., Connolly, S. L., Schnelle, A. N., Fan, T. M. & Barger, A. M., Sep 2023, In: Equine veterinary journal. 55, 5, p. 916-922 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A cyberGIS approach to exploring neighborhood-level social vulnerability for disaster risk management

  Han, S. Y., Kang, J. Y., Lyu, F., Baig, F., Park, J., Smilovsky, D. & Wang, S., Nov 2023, In: Transactions in GIS. 27, 7, p. 1942-1958 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Acyclic graphs with at least 2ℓ + 1 vertices are ℓ-recognizable

  Kostochka, A. V., Nahvi, M., West, D. B. & Zirlin, D., 2023, (Accepted/In press) In: Journal of Graph Theory.

  Research output: Contribution to journal › Article › peer-review

  Open Access