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• 2018

  3D printing for preoperative planning and surgical training: a review

  Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J., Kesavadas, T. & Bashir, R., Sep 1 2018, In: Biomedical microdevices. 20, 3, 65.

  Research output: Contribution to journal › Review article › peer-review

  • Three-Dimensional Printing
  • Printing
  • Audiovisual Aids
  • Planning
  • Diagnostic Imaging

• A microfluidic biochip platform for electrical quantification of proteins

  Valera, E., Berger, J., Hassan, U., Ghonge, T., Liu, J., Rappleye, M., Winter, J., Abboud, D., Haidry, Z., Healey, R., Hung, N. T., Leung, N., Mansury, N., Hasnain, A., Lannon, C., Price, Z., White, K. & Bashir, R., May 21 2018, In: Lab on a chip. 18, 10, p. 1461-1470 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Biochips
  • Biomarkers
  • Microfluidics
  • Proteins
  • Sepsis

• Biodegradable Monocrystalline Silicon Photovoltaic Microcells as Power Supplies for Transient Biomedical Implants

  Lu, L., Yang, Z., Meacham, K., Cvetkovic, C., Corbin, E. A., Vázquez-Guardado, A., Xue, M., Yin, L., Boroumand, J., Pakeltis, G., Sang, T., Yu, K. J., Chanda, D., Bashir, R., Gereau, R. W., Sheng, X. & Rogers, J. A., Jun 5 2018, In: Advanced Energy Materials. 8, 16, 1703035.

  Research output: Contribution to journal › Article › peer-review

  • Monocrystalline silicon
  • Oils and fats
  • Wavelength
  • Skin
  • Tissue

• Detecting sepsis by observing neutrophil motility

  Hassan, U., Valera, E. & Bashir, R., Apr 1 2018, In: Nature biomedical engineering. 2, 4, p. 197-198 2 p.

  Research output: Contribution to journal › Article › peer-review

• Mobile biosensing using the sensing capabilities of smartphone cameras

  Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., Ganguli, A., Lumetta, S. & Bashir, R., Jan 4 2018, 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; vol. 2018-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Smartphones
  • cameras
  • Image processing
  • Health
  • Cameras

• Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

  Hassan, U., Zhu, R. & Bashir, R., Apr 21 2018, In: Lab on a chip. 18, 8, p. 1231-1240 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Biosensing Techniques
  • Biosensors
  • Sepsis
  • Multivariate Analysis
  • Systemic Inflammatory Response Syndrome

• Optomechanical microrheology of single adherent cancer cells

  Adeniba, O. O., Corbin, E. A., Ewoldt, R. H. & Bashir, R., Mar 1 2018, In: APL Bioengineering. 2, 1, 016108.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cells
  • Viscoelastic Substances
  • Cell membranes
  • Soft materials
  • Mechanical properties

• Perspective: The promise of multi-cellular engineered living systems

  Kamm, R. D., Bashir, R., Arora, N., Dar, R. D., Gillette, M. U., Griffith, L. G., Kemp, M. L., Kinlaw, K., Levin, M., Martin, A. C., McDevitt, T. C., Nerem, R. M., Powers, M. J., Saif, T. A., Sharpe, J., Takayama, S., Takeuchi, S., Weiss, R., Ye, K., Yevick, H. G. & 1 others, Zaman, M. H., Dec 1 2018, In: APL Bioengineering. 2, 4, 040901.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Bioprinting
  • Cytology
  • Stem cells
  • Organoids
  • Assays

• Pixelated spatial gene expression analysis from tissue

  Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In: Nature communications. 9, 1, 202.

  Research output: Contribution to journal › Article › peer-review

  • gene expression
  • Gene expression
  • Tissue
  • ribonucleic acids
  • Amplification

• Point-of-care sensors for the management of sepsis

  Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In: Nature biomedical engineering. 2, 9, p. 640-648 9 p.

  Research output: Contribution to journal › Review article › peer-review

  • Point-of-Care Systems
  • Sepsis
  • Health
  • Sensors
  • Infection

• Robust label-free microRNA detection using one million ISFET array

  Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In: Biomedical microdevices. 20, 2, 1 p.

  Research output: Contribution to journal › Article › peer-review

  • Ion sensitive field effect transistors
  • Nucleic acids
  • Assays
  • Nucleic Acids
  • Molecules

• Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines

  Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In: Advanced Functional Materials. 28, 23, 1801145.

  Research output: Contribution to journal › Article › peer-review

  • walking machines
  • Scaffolds
  • Tissue
  • Robotics
  • Actuators
• 2016

  3D printing enables separation of orthogonal functions within a hydrogel particle

  Raman, R., Clay, N. E., Sen, S., Melhem, M., Qin, E., Kong, H. & Bashir, R., Jan 1 2016, In: Biomedical microdevices. 18, 3, 49.

  Research output: Contribution to journal › Article › peer-review

  • Orthogonal functions
  • Three-Dimensional Printing
  • Hydrogels
  • Iron oxides
  • Polyethylene glycols

• Biaxial Dielectrophoresis Force Spectroscopy: A Stoichiometric Approach for Examining Intermolecular Weak Binding Interactions

  Park, I. S., Kwak, T. J., Lee, G., Son, M., Choi, J. W., Choi, S., Nam, K., Lee, S. Y., Chang, W. J., Eom, K., Yoon, D. S., Lee, S., Bashir, R. & Lee, S. W., Apr 26 2016, In: ACS Nano. 10, 4, p. 4011-4019 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Electrophoresis
  • Spectroscopy
  • loading rate
  • pulling
  • spectroscopy

• Design and integration of a problem-based biofabrication course into an undergraduate biomedical engineering curriculum

  Raman, R., Mitchell, M., Perez-Pinera, P., Bashir, R. & DeStefano, L., Sep 21 2016, In: Journal of Biological Engineering. 10, 1, 10.

  Research output: Contribution to journal › Article › peer-review

  • Biomedical Engineering
  • Biomedical engineering
  • Curricula
  • Curriculum
  • Students

• Detection of silver ions using dielectrophoretic tweezers-based force spectroscopy

  Choi, S., Lee, G., Park, I. S., Son, M., Kim, W., Lee, H., Lee, S. Y., Na, S., Yoon, D. S., Bashir, R., Park, J. & Lee, S. W., Jan 1 2016, In: Analytical chemistry. 88, 22, p. 10867-10875 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Polynucleotides
  • Spectroscopy
  • Silver
  • Metal ions
  • Heavy ions

• Direct characterization of hydrodynamic loading on a microelectromechanical systems microstructure

  Mehrnezhad, A., Bashir, R. & Park, K., Mar 14 2016, In: Applied Physics Letters. 108, 11, 114101.

  Research output: Contribution to journal › Article › peer-review

  • microelectromechanical systems
  • hydrodynamics
  • microstructure
  • characterization
  • viscous fluids

• Droplet-based biosensing for lab-on-a-chip, open microfluidics platforms

  Dak, P., Ebrahimi, A., Swaminathan, V., Duarte-Guevara, C., Bashir, R. & Alam, M. A., 2016, In: Biosensors. 6, 2, 14.

  Research output: Contribution to journal › Review article › peer-review

  • Lab-on-a-chip
  • Microfluidics
  • Biosensing Techniques
  • Biosensors
  • Costs and Cost Analysis

• Dynamic mechanical measurement of the viscoelasticity of single adherent cells

  Corbin, E. A., Adeniba, O. O., Ewoldt, R. H. & Bashir, R., Feb 29 2016, In: Applied Physics Letters. 108, 9, 093701.

  Research output: Contribution to journal › Article › peer-review

  • mechanical measurement
  • viscoelasticity
  • cells
  • sensors
  • microelectromechanical systems

• Electrical Chips for Biological Point-of-Care Detection

  Reddy, B., Salm, E. & Bashir, R., Jul 11 2016, In: Annual Review of Biomedical Engineering. 18, p. 329-355 27 p.

  Research output: Contribution to journal › Review article › peer-review

  • Biochips
  • Point-of-Care Systems
  • Lab-on-a-chip
  • Multiplexing
  • Health care

• High-Resolution Projection Microstereolithography for Patterning of Neovasculature

  Raman, R., Bhaduri, B., Mir, M., Shkumatov, A., Lee, M. K., Popescu, G., Kong, H. & Bashir, R., Mar 9 2016, In: Advanced Healthcare Materials. 5, 5, p. 610-619 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Tissue engineering
  • Assays
  • Immunosorbents
  • Tissue

• HIV-1 IIIB capture from whole blood on magnetic microparticles

  Damhorst, G. L., Kooiman, J. M. & Bashir, R., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 5785-5788 4 p. 7592042. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Antibodies
  • Blood
  • Proteins
  • HIV-1
  • Drug therapy

• Magnetophoretic-based microfluidic device for DNA Concentration

  Shim, S., Shim, J., Taylor, W. R., Kosari, F., Vasmatzis, G., Ahlquist, D. A. & Bashir, R., Apr 1 2016, In: Biomedical microdevices. 18, 2, p. 1-8 8 p., 28.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Microfluidics
  • DNA
  • Nanofluidics
  • Nucleic acids

• Microcantilevers track single-cell mass

  Bashir, R., Nov 8 2016, In: Nature Biotechnology. 34, 11, p. 1125-11260 10136 p.

  Research output: Contribution to journal › Short survey › peer-review

• Microfluidic differential immunocapture biochip for specific leukocyte counting

  Hassan, U., Watkins, N. N., Reddy, B., Damhorst, G. & Bashir, R., Apr 1 2016, In: Nature Protocols. 11, 4, p. 714-726 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Biochips
  • Biosensors
  • Microfluidics
  • Leukocytes
  • Biosensing Techniques

• Modeling and Analysis of Intercalant Effects on Circular DNA Conformation

  Krueger, E., Shim, J., Fathizadeh, A., Chang, A. N., Subei, B., Yocham, K. M., Davis, P. H., Graugnard, E., Khalili-Araghi, F., Bashir, R., Estrada, D. & Fologea, D., Sep 27 2016, In: ACS Nano. 10, 9, p. 8910-8917 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Circular DNA
  • Conformations
  • DNA
  • deoxyribonucleic acid
  • Nanopores

• On-chip electrical detection of parallel loop-mediated isothermal amplification with DG-BioFETs for the detection of foodborne bacterial pathogens

  Duarte-Guevara, C., Swaminathan, V. V., Reddy, B., Huang, J. C., Liu, Y. S. & Bashir, R., Jan 1 2016, In: RSC Advances. 6, 106, p. 103872-103887 16 p.

  Research output: Contribution to journal › Article › peer-review

  • Pathogens
  • Amplification
  • Assays
  • Gold
  • Nucleic acids

• On-chip PMA labeling of foodborne pathogenic bacteria for viable qPCR and qLAMP detection

  Duarte-Guevara, P., Duarte-Guevara, C., Ornob, A. & Bashir, R., Aug 1 2016, In: Microfluidics and Nanofluidics. 20, 8, 114.

  Research output: Contribution to journal › Article › peer-review

  • propidium monoazide
  • Bacteria
  • bacteria
  • marking
  • Labeling

• Optogenetic skeletal muscle-powered adaptive biological machines

  Raman, R., Cvetkovic, C., Uzel, S. G. M., Platt, R. J., Sengupta, P., Kamm, R. D. & Bashir, R., Mar 29 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 13, p. 3497-3502 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Bioengineering
  • Skeleton
  • Locomotion
  • Skeletal Muscle
• 2014

  3D biofabrication strategies for tissue engineering and regenerative medicine

  Bajaj, P., Schweller, R. M., Khademhosseini, A., West, J. L. & Bashir, R., Jul 2014, In: Annual Review of Biomedical Engineering. 16, p. 247-276 30 p.

  Research output: Contribution to journal › Review article › peer-review

  • Regenerative Medicine
  • Tissue engineering
  • Biomaterials
  • Biocompatible Materials
  • Tissue Engineering

• Coincidence detection of heterogeneous cell populations from whole blood with coplanar electrodes in a microfluidic impedance cytometer

  Hassan, U. & Bashir, R., Nov 21 2014, In: Lab on a chip. 14, 22, p. 4370-4381 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Microfluidics
  • Electric Impedance
  • Cells
  • Blood
  • Electrodes

• Creating living cellular machines

  Kamm, R. D. & Bashir, R., Feb 2014, In: Annals of Biomedical Engineering. 42, 2, p. 445-459 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Developmental Biology
  • Regenerative Medicine
  • Synthetic biology
  • Self assembly
  • Systems Biology

• Dissolution chemistry and biocompatibility of single-crystalline silicon nanomembranes and associated materials for transient electronics

  Hwang, S. W., Park, G., Edwards, C., Corbin, E. A., Kang, S. K., Cheng, H., Song, J. K., Kim, J. H., Yu, S., Ng, J., Lee, J. E., Kim, J., Yee, C., Bhaduri, B., Omennetto, F. G., Huang, Y., Bashir, R., Goddard, L., Popescu, G., Lee, K. M. & 1 others, Rogers, J. A., Jun 24 2014, In: ACS Nano. 8, 6, p. 5843-5851 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Biocompatibility
  • biocompatibility
  • Silicon
  • Dissolution
  • Crystalline materials

• Electrical cell counting process characterization in a microfluidic impedance cytometer

  Hassan, U. & Bashir, R., Jan 1 2014, In: Biomedical microdevices. 16, 5, p. 697-704 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Microfluidics
  • Electric Impedance
  • Acoustic impedance
  • Dilution
  • Blood

• Electrical detection of nucleic acid amplification using an on-chip quasi-reference electrode and a PVC REFET

  Salm, E., Zhong, Y., Reddy, B., Duarte-Guevara, C., Swaminathan, V., Liu, Y. S. & Bashir, R., Jul 15 2014, In: Analytical Chemistry. 86, 14, p. 6968-6975 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Polyvinyl Chloride
  • Field effect transistors
  • Ion sensitive field effect transistors
  • Amplification
  • Nucleic Acids

• Enhanced biosensing resolution with foundry fabricated individually addressable dual-gated ISFETs

  Duarte-Guevara, C., Lai, F. L., Cheng, C. W., Reddy, B., Salm, E., Swaminathan, V., Tsui, Y. K., Tuan, H. C., Kalnitsky, A., Liu, Y. S. & Bashir, R., Aug 19 2014, In: Analytical Chemistry. 86, 16, p. 8359-8367 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Ion sensitive field effect transistors
  • Foundries
  • Transistors
  • Silicon
  • Semiconductor materials

• Flow metering characterization within an electrical cell counting microfluidic device

  Hassan, U., Watkins, N. N., Edwards, C. & Bashir, R., Apr 21 2014, In: Lab on a chip. 14, 8, p. 1469-1476 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Microfluidics
  • Blood
  • Fluids
  • Flow of fluids

• Graphene-Based Patterning and Differentiation of C2C12 Myoblasts

  Bajaj, P., Rivera, J. A., Marchwiany, D., Solovyeva, V. & Bashir, R., Jul 2014, In: Advanced Healthcare Materials. 3, 7, p. 995-1000 6 p.

  Research output: Contribution to journal › Article › peer-review

• Material-mediated proangiogenic factor release pattern modulates quality of regenerated blood vessels

  Rich, M. H., Lee, M. K., Baek, K., Jeong, J. H., Kim, D. H., Millet, L. J., Bashir, R. & Kong, H., Dec 28 2014, In: Journal of Controlled Release. 196, p. 363-369 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Vascular Endothelial Growth Factor A
  • Blood Vessels
  • poly(ethylene glycol)diacrylate
  • Gels

• Measuring physical properties of neuronal and glial cells with resonant microsensors

  Corbin, E. A., Millet, L. J., Keller, K. R., King, W. P. & Bashir, R., May 20 2014, In: Analytical Chemistry. 86, 10, p. 4864-4872 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Neuroglia
  • Microsensors
  • Physical properties
  • Sensors
  • Cells

• Micro-masonry of MEMS sensors and actuators

  Zhang, Y., Keum, H., Park, K., Bashir, R. & Kim, S., Apr 2014, In: Journal of Microelectromechanical Systems. 23, 2, p. 308-314 7 p., 6570758.

  Research output: Contribution to journal › Article › peer-review

  • MEMS
  • Actuators
  • Microfabrication
  • Sensors
  • Rapid thermal annealing

• Micro-patterning of mammalian cells on suspended MEMS resonant sensors for long-term growth measurements

  Corbin, E. A., Dorvel, B. R., Millet, L. J., King, W. P. & Bashir, R., Apr 21 2014, In: Lab on a chip. 14, 8, p. 1401-1404 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Micro-Electrical-Mechanical Systems
  • Cells
  • MEMS
  • Sensors
  • Growth

• Nano/micro and spectroscopic approaches to food pathogen detection

  Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In: Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

  Research output: Contribution to journal › Review article › peer-review

  • Pathogens
  • Phage display
  • Light scattering
  • Raman spectroscopy
  • Fourier transform infrared spectroscopy

• New technologies for measuring single cell mass

  Popescu, G., Park, K., Mir, M. & Bashir, R., Feb 21 2014, In: Lab on a chip. 14, 4, p. 646-652 7 p.

  Research output: Contribution to journal › Review article › peer-review

  • Cells
  • Imaging techniques
  • Technology
  • Sensors
  • Medicine

• Three-dimensionally printed biological machines powered by skeletal muscle

  Cvetkovic, C., Raman, R., Chan, V., Williams, B. J., Tolish, M., Bajaj, P., Sakar, M. S., Asada, H. H., Saif, M. T. A. & Bashir, R., Jul 15 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 28, p. 10125-10130 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Skeletal Muscle
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Locomotion
  • Electric Power Supplies
  • Three-Dimensional Printing

• Utilization and control of bioactuators across multiple length scales

  Chan, V., Asada, H. H. & Bashir, R., Feb 21 2014, In: Lab on a chip. 14, 4, p. 653-670 18 p.

  Research output: Contribution to journal › Review article › peer-review

  • Tissue
  • Cells
  • Muscle
  • Protozoa
  • Adenosine Triphosphatases
• 2013

  3D fabrication of biological machines

  Chan, V., Kong, H. J. & Bashir, R., Oct 31 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 314-317 4 p. 6609500. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Biomaterials
  • Cells
  • Fabrication
  • Biocompatible Materials
  • Cell Count

• A liposome-based ion release impedance sensor for biological detection

  Damhorst, G. L., Smith, C. E., Salm, E. M., Sobieraj, M. M., Ni, H., Kong, H. & Bashir, R., Oct 2013, In: Biomedical microdevices. 15, 5, p. 895-905 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Liposomes
  • Electric Impedance
  • Biomolecules
  • Ions
  • Pathogens

• Biomedical micro and nanotechnology: From lab-on-chip to building systems with cells

  Hassan, U., Bajaj, P., Damhorst, G. & Bashir, R., Dec 1 2013, 2013 Transducers and Eurosensors XXVII: The 17th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS and EUROSENSORS 2013. p. 2539-2543 5 p. 6627323. (2013 Transducers and Eurosensors XXVII: The 17th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS and EUROSENSORS 2013).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nanotechnology
  • T-cells
  • Nucleic acids
  • Pathogens
  • Tissue engineering

• Biomedical micro and nanotechnology: From lab-on-chip to building with cells

  Hassan, U., Bajaj, P., Salm, E., Damhorst, G. & Bashir, R., Dec 16 2013, 71st Device Research Conference, DRC 2013 - Conference Digest. 1 p. 6633767. (Device Research Conference - Conference Digest, DRC).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution