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• 2011

  Simulation of the stagnation region microcrack growth during space shuttle reentry

  Titov, E. V., Levin, D. A., Anderson, B. P., Rodriguez, A. & Picetti, D. J., 2011, In: Journal of thermophysics and heat transfer. 25, 1, p. 48-54 7 p.

  Research output: Contribution to journal › Article › peer-review

  • space shuttles
  • reentry
  • space shuttle
  • stagnation point
  • Space shuttles

• Simulations of black holes in compactified spacetimes

  Zilhão, M., Cardoso, V., Gualtieri, L., Herdeiro, C., Nerozzi, A., Sperhake, U. & Witek, H., Jan 1 2011, In: Journal of Physics: Conference Series. 314, 1, 012103.

  Research output: Contribution to journal › Conference article › peer-review

  Open Access

  • simulation
  • relativity
  • gravitation
  • physics
  • configurations

• Simulations of single and multiple swimmers with non-divergence free deforming geometries

  Gazzola, M., Chatelain, P., van Rees, W. M. & Koumoutsakos, P., Aug 10 2011, In: Journal of Computational Physics. 230, 19, p. 7093-7114 22 p.

  Research output: Contribution to journal › Article › peer-review

  • Vortex Method
  • Barreling
  • Particle Method
  • Incompressible Viscous Flow
  • Moving Boundary

• Simultaneous determination of 6 L-arginine metabolites in human and mouse plasma by using hydrophilic-interaction chromatography and electrospray tandem mass spectrometry

  Brown, C. M., Becker, J. O., Wise, P. M. & Hoofnagle, A. N., May 2011, In: Clinical Chemistry. 57, 5, p. 701-709 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Beam plasma interactions
  • Metabolites
  • Chromatography
  • Mass spectrometry
  • Tandem Mass Spectrometry

• Simultaneous dynamic and functional MRI scanning (SimulScan) of natural swallows

  Paine, T. L., Conway, C. A., Malandraki, G. A. & Sutton, B. P., May 2011, In: Magnetic Resonance in Medicine. 65, 5, p. 1247-1252 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Swallows
  • Deglutition
  • Magnetic Resonance Imaging
  • Motion Pictures
  • Healthy Volunteers

• Simultaneous injection of wastewater and CO (sub 2) in a heterogeneous aquifer

  Okwen, R. T., Thomas, M. W., Stewart, M., Trotz, M. & Cunningham, J. A., 2011, American Geophysical Union Fall Meeting. Washington, DC: American Geophysical Union, Vol. 2011.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • aquifer
  • wastewater
  • mineral
  • simulation
  • saturation

• Simultaneous optical measurements of cell motility and growth

  Sridharan, S., Mir, M. & Popescu, G., 2011, In: Biomedical Optics Express. 2, 10, p. 2815-2820 6 p.

  Research output: Contribution to journal › Article › peer-review

  • locomotion
  • optical measurement
  • Cell Movement
  • cells
  • Growth

• Single cell 3-D platform to study ligand mobility in cell-cell contact

  Andreasson-Ochsner, M., Romano, G., Håkanson, M., Smith, M. L., Leckband, D. E., Textor, M. & Reimhult, E., Sep 7 2011, In: Lab on a chip. 11, 17, p. 2876-2883 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Ligands
  • Lipid bilayers
  • Cadherins
  • Cell adhesion
  • Lipids

• Single-electron charging and discharging analyses in Ge-nanocrystal memories

  De Sousa, J. S., Peibst, R., Erenburg, M., Bugiel, E., Farias, G. A., Leburton, J. P. & Hofmann, K. R., Feb 2011, In: IEEE Transactions on Electron Devices. 58, 2, p. 376-383 8 p., 5697327.

  Research output: Contribution to journal › Article › peer-review

  • Nanocrystals
  • Electrons
  • Data storage equipment
  • Density functional theory
  • Wave functions

• Single-image shadow detection and removal using paired regions

  Guo, R., Dai, Q. & Hoiem, D., Jan 1 2011, 2011 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2011. IEEE Computer Society, p. 2033-2040 8 p. 5995725. (Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Lighting
  • Pixels
  • Labeling

• Single-layer and dual-layer contrast-enhanced mammography using amorphous selenium flat panel detectors

  Allec, N., Abbaszadeh, S. & Karim, K. S., Sep 21 2011, In: Physics in medicine and biology. 56, 18, p. 5903-5923 21 p.

  Research output: Contribution to journal › Article › peer-review

  • Selenium
  • Mammography
  • Artifacts
  • Contrast Media
  • Image Enhancement

• Single-loop system reliability-based topology optimization considering statistical dependence between limit-states

  Nguyen, T. H., Song, J. & Paulino, G. H., Nov 1 2011, In: Structural and Multidisciplinary Optimization. 44, 5, p. 593-611 19 p.

  Research output: Contribution to journal › Article › peer-review

  • Topology Optimization
  • System Reliability
  • Shape optimization
  • Optimization Algorithm
  • Failure Probability

• Single molecule analysis of yeast Rrp44 exonuclease reveals a spring-loaded mechanism of RNA unwinding

  Lee, G., Bratkowski, M. A., Ding, F., Ke, A. & Ha, T., Dec 1 2011, Frontiers in Optics, FiO 2011. (Optics InfoBase Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Single-molecule analysis reveals three phases of DNA degradation by an exonuclease

  Lee, G., Yoo, J., Leslie, B. J. & Ha, T., Jun 2011, In: Nature chemical biology. 7, 6, p. 367-374 8 p.

  Research output: Contribution to journal › Review article › peer-review

  • Exodeoxyribonucleases
  • Exonucleases
  • Base Pairing
  • Fluorescence Resonance Energy Transfer
  • Enzymes

• Single-molecule-based super-resolution images in the presence of multiple fluorophores

  Simonson, P. D., Rothenberg, E. & Selvin, P. R., Nov 9 2011, In: Nano letters. 11, 11, p. 5090-5096 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Fluorophores
  • image resolution
  • Image resolution
  • Molecules
  • molecules

• Single molecule detection of one, two and multiplex proteins involved in DNA/RNA transaction

  Qiu, Y. & Myong, S., Jun 1 2011, In: Cellular and Molecular Bioengineering. 4, 2, p. 125-137 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Transactions
  • RNA
  • Protein
  • DNA
  • Molecules

• Single-molecule FRET: Technique and applications to the studies of molecular machines

  Shi, X. & Ha, T., Jan 1 2011, Molecular Machines in Biology: Workshop of the Cell. Cambridge University Press, p. 4-19 16 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Forster resonance energy transfer
  • Molecules
  • Hydrolysis
  • triphosphoric acid
  • Adenosine

• Single molecule In Vivo analysis of toll-like receptor 9 and CpG DNA interaction

  Chen, J., Nag, S., Vidi, P. A. & Irudayaraj, J., 2011, In: PloS one. 6, 4, e17991.

  Research output: Contribution to journal › Article › peer-review

  • Toll-like receptor 9
  • Toll-Like Receptor 9
  • Molecules
  • DNA
  • Fluorescence

• Single-molecule nanopositioning: Structural transitions of a helicase-DNA complex during ATP hydrolysis

  Balci, H., Arslan, S., Myong, S., Lohman, T. M. & Ha, T., Aug 17 2011, In: Biophysical journal. 101, 4, p. 976-984 9 p.

  Research output: Contribution to journal › Article › peer-review

  • DNA Helicases
  • Hydrolysis
  • Adenosine Triphosphate
  • Nucleic Acid Conformation
  • DNA

• Single-molecule studies of HIV-1 protease catalysis enabled by chemical protein synthesis

  Torbeev, V. Y., Myong, S. A., Ha, T. & Kent, S. B. H., Nov 1 2011, In: Israel Journal of Chemistry. 51, 8-9, p. 960-967 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Human immunodeficiency virus 1 p16 protease
  • Catalysis
  • Molecules
  • Peptides
  • Substrates

• Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-Seq

  Wang, Y., Li, X., Mao, Y. & Blaschek, H. P., Sep 30 2011, In: BMC genomics. 12, 479.

  Research output: Contribution to journal › Article › peer-review

  • Clostridium beijerinckii
  • Operon
  • Gene Expression Profiling
  • Nucleotides
  • RNA

• Single spin asymmetries in charged pion production from semi-inclusive deep inelastic scattering on a transversely polarized He3 target at Q2=1.4-2.7GeV2

  Qian, X., Allada, K., Dutta, C., Huang, J., Katich, J., Wang, Y., Zhang, Y., Aniol, K., Annand, J. R. M., Averett, T., Benmokhtar, F., Bertozzi, W., Bradshaw, P. C., Bosted, P., Camsonne, A., Canan, M., Cates, G. D., Chen, C., Chen, J. P., Chen, W. & 95 others, Chirapatpimol, K., Chudakov, E., Cisbani, E., Cornejo, J. C., Cusanno, F., Dalton, M. M., Deconinck, W., De Jager, C. W., De Leo, R., Deng, X., Deur, A., Ding, H., Dolph, P. A. M., Dutta, D., El Fassi, L., Frullani, S., Gao, H., Garibaldi, F., Gaskell, D., Gilad, S., Gilman, R., Glamazdin, O., Golge, S., Guo, L., Hamilton, D., Hansen, O., Higinbotham, D. W., Holmstrom, T., Huang, M., Ibrahim, H. F., Iodice, M., Jiang, X., Jin, G., Jones, M. K., Kelleher, A., Kim, W., Kolarkar, A., Korsch, W., Lerose, J. J., Li, X., Li, Y., Lindgren, R., Liyanage, N., Long, E., Lu, H. J., Margaziotis, D. J., Markowitz, P., Marrone, S., McNulty, D., Meziani, Z. E., Michaels, R., Moffit, B., Muñoz Camacho, C., Nanda, S., Narayan, A., Nelyubin, V., Norum, B., Oh, Y., Osipenko, M., Parno, D., Peng, J. C., Phillips, S. K., Posik, M., Puckett, A. J. R., Qiang, Y., Rakhman, A., Ransome, R. D., Riordan, S., Saha, A., Sawatzky, B., Schulte, E., Shahinyan, A., Shabestari, M. H., Å Irca, S., Stepanyan, S., Subedi, R., Sulkosky, V., Tang, L. G., Tobias, A., Urciuoli, G. M., Vilardi, I., Wang, K., Wojtsekhowski, B., Yan, X., Yao, H., Ye, Y., Ye, Z., Yuan, L., Zhan, X., Zhang, Y. W., Zhao, B., Zheng, X., Zhu, L., Zhu, X. & Zong, X., Aug 10 2011, In: Physical review letters. 107, 7, 072003.

  Research output: Contribution to journal › Article › peer-review

  • inelastic scattering
  • pions
  • asymmetry
  • moments
  • quark models

• Single timescale stochastic approximation for stochastic Nash games in cognitive radio systems

  Koshal, J., Nedić, A. & Shanbhagy, U. V., Sep 29 2011, 17th DSP 2011 International Conference on Digital Signal Processing, Proceedings. 6004914. (17th DSP 2011 International Conference on Digital Signal Processing, Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Radio systems
  • Cognitive radio
  • Temperature

• Single-virus tracking reveals a spatial receptor-dependent search mechanism

  Rothenberg, E., Sepúlveda, L. A., Skinner, S. O., Zeng, L., Selvin, P. R. & Golding, I., 2011, In: Biophysical journal. 100, 12, p. 2875-2882 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Viruses
  • Virus Attachment
  • Virus Receptors
  • Viral Genome
  • Fluorescence Microscopy

• Singular surfaces in multi-agent connectivity maintenance games

  Bhattacharya, S., Basar, T. & Hovakimyan, N., Dec 1 2011, 2011 50th IEEE Conference on Decision and Control and European Control Conference, CDC-ECC 2011. p. 261-266 6 p. 6160247. (Proceedings of the IEEE Conference on Decision and Control).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Singular Surfaces
  • Maintenance
  • Connectivity
  • Game
  • Rician Fading

• Singular value decomposition analysis of a photoacoustic imaging system and 3D imaging at 0.7 FPS

  Roumeliotis, M. B., Stodilka, R. Z., Anastasio, M. A., Ng, E. & Carson, J. J. L., Jul 4 2011, In: Optics Express. 19, 14, p. 13405-13417 13 p.

  Research output: Contribution to journal › Article › peer-review

  • decomposition
  • operators
  • point sources
  • sampling
  • transducers

• Sirens without Us: The Future after Humanity

  Rushing, R. A., 2011, In: California Italian Studies. 2, 1, 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Site assessment update at Weyburn-Midale CO₂ sequestration project, Saskatchewan, Canada: New results at an active CO₂ sequestration site

  Jensen, G., Nickel, E., Whittaker, S. & Rostron, B., 2011, In: Energy Procedia. 4, p. 4777-4784 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrochemistry
  • Seals
  • Carbon
  • Fluids
  • Monitoring

• Site-specific attachment of proteins onto a 3D DNA tetrahedron through backbone-modified phosphorothioate DNA

  Wong, N. Y., Zhang, C., Tan, L. H. & Lu, Y., May 23 2011, In: Small. 7, 10, p. 1427-1430 4 p.

  Research output: Contribution to journal › Article › peer-review

  • DNA
  • Proteins
  • Nanostructures

• Site-specific methylation in Bacillus subtilis chemotaxis: Effect of covalent modifications to the chemotaxis receptor McpB

  Glekas, G. D., Cates, J. R., Cohen, T. M., Rao, C. V. & Ordal, G. W., Jan 2011, In: Microbiology. 157, 1, p. 56-65 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Bacillus subtilis
  • Chemotaxis
  • Asparagine
  • Methylation
  • Phosphotransferases

• Site structure and activity organization at a late paleoindian base camp in western nebraska

  Hill, M. G., Rapson, D. J., Loebel, T. J. & May, D. W., Oct 2011, In: American Antiquity. 76, 4, p. 752-772 21 p.

  Research output: Contribution to journal › Article › peer-review

  • Site Structure
  • Paleoindian
  • organization
  • Hunting Strategies
  • Ecofacts

• Six Distributional Effects of Environmental Policy

  Fullerton, D., Jun 2011, In: Risk Analysis. 31, 6, p. 923-929 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Environmental Policy
  • Carbon
  • Resource Allocation
  • Licensure
  • Economics

• Size-extensive vibrational self-consistent field method

  Keçeli, M. & Hirata, S., Oct 7 2011, In: Journal of Chemical Physics. 135, 13, 134108.

  Research output: Contribution to journal › Article › peer-review

  • self consistent fields
  • field theory (physics)
  • Costs
  • potential fields
  • inclusions

• Size-extensive vibrational self-consistent field method.

  Keçeli, M. & Hirata, S., Oct 7 2011, In: The Journal of chemical physics. 135, 13, p. 134108 1 p.

  Research output: Contribution to journal › Article › peer-review

  • self consistent fields
  • field theory (physics)
  • Costs
  • potential fields
  • inclusions

• Size preferences and behaviors of native yellow perch foraging on invasive round gobies

  Weber, M. J., Dettmers, J. M., Wahl, D. H. & Czesny, S. J., Sep 1 2011, In: Journal of Great Lakes Research. 37, 3, p. 584-587 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Perca flavescens
  • Gobiiformes
  • foraging
  • Neogobius melanostomus
  • predator-prey interaction

• Size-sensitive sorting of microparticles through control of flow geometry

  Wang, C., Jalikop, S. V. & Hilgenfeldt, S., Jul 18 2011, In: Applied Physics Letters. 99, 3, 034101.

  Research output: Contribution to journal › Article › peer-review

  • flow geometry
  • microparticles
  • classifying
  • acoustic streaming
  • releasing

• Skeletal muscle myoblasts possess a stretch-responsive local angiotensin signalling system

  Johnston, A. P. W., Baker, J., De Lisio, M. & Parise, G., Jun 2011, In: JRAAS - Journal of the Renin-Angiotensin-Aldosterone System. 12, 2, p. 75-84 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Skeletal Myoblasts
  • Angiotensins
  • Renin-Angiotensin System
  • Myoblasts
  • Skeletal Muscle

• SLC6A4 methylation modifies the effect of the number of traumatic events on risk for posttraumatic stress disorder

  Koenen, K. C., Uddin, M., Chang, S. C., Aiello, A. E., Wildman, D. E., Goldmann, E. & Galea, S., Aug 2011, In: Depression and Anxiety. 28, 8, p. 639-647 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Post-Traumatic Stress Disorders
  • Methylation
  • Genotype
  • Serotonin Plasma Membrane Transport Proteins
  • Wounds and Injuries

• Sleep, rhythms, and the endocrine brain: Influence of sex and gonadal hormones

  Mong, J. A., Baker, F. C., Mahoney, M. M., Paul, K. N., Schwartz, M. D., Semba, K. & Silver, R., Nov 9 2011, In: Journal of Neuroscience. 31, 45, p. 16107-16116 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Gonadal Hormones
  • Gonadal Steroid Hormones
  • Sleep
  • Sex Characteristics
  • Circadian Rhythm

• Sleep control for tracking in sensor networks

  Fuemmeler, J. A., Atia, G. K. & Veeravalli, V. V., Sep 2011, In: IEEE Transactions on Signal Processing. 59, 9, p. 4354-4366 13 p., 5875902.

  Research output: Contribution to journal › Article › peer-review

  • Sleep
  • Sensor networks
  • Sensors
  • Costs

• Slick packets

  Nguyen, G. T. K., Agarwal, R., Liu, J., Caesar, M., Godfrey, P. B. & Shenker, S., 2011, SIGMETRICS'11 - Proceedings of the 2011 ACM SIGMETRICS International Conference on Measurement and Modeling of Computer Systems. 1 SPEC. ISSUE ed. p. 245-256 12 p. (Performance Evaluation Review; vol. 39, no. 1 SPEC. ISSUE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Network architecture
  • Topology

• SLO-driven right-sizing and resource provisioning of MapReduce jobs

  Verma, A., Cherkasova, L. & Campbell, R. H., Aug 31 2011, HP Laboratories Technical Report. 126 ed.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Linear regression
  • Marketing
  • Planning

• SMALL: A Strategy-proof Mechanism for radio spectrum allocation

  Wu, F. & Vaidya, N., 2011, 2011 Proceedings IEEE INFOCOM. p. 81-85 5 p. 5935304. (Proceedings - IEEE INFOCOM).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Communication

• Small-angle neutron scattering measurements of hydrogen and deuterium trapping at dislocations in deformed single-crystalline Pd at low temperature

  Heuser, B. J. & Ju, H., Mar 4 2011, In: Physical Review B - Condensed Matter and Materials Physics. 83, 9, 094103.

  Research output: Contribution to journal › Article › peer-review

  • Neutron scattering
  • Deuterium
  • Hydrogen
  • Crystalline materials
  • deuterium

• Small bowel obstruction due to mycosis fungoides: An unusual presentation

  Velagapudi, P., Turagam, M., Uzoaru, I. & Graham, D., Jun 2011, In: American Journal of the Medical Sciences. 341, 6, p. 508-509 2 p.

  Research output: Contribution to journal › Article › peer-review

  • Mycosis Fungoides
  • Clobetasol
  • Gastrointestinal Tract
  • Biopsy
  • Morbidity

• Small dilatation pseudo-Anosov homeomorphisms and 3-manifolds

  Farb, B., Leininger, C. J. & Margalit, D., Oct 20 2011, In: Advances in Mathematics. 228, 3, p. 1466-1502 37 p.

  Research output: Contribution to journal › Article › peer-review

  • Pseudo-Anosov
  • Dilatation
  • Homeomorphism
  • Dehn Filling
  • Monodromy

• Small inverter-interfaced distributed energy resources for reactive power support

  Domínguez-García, A. D., Hadjicostis, C. N., Krein, P. T. & Cady, S. T., May 13 2011, 2011 26th Annual IEEE Applied Power Electronics Conference and Exposition, APEC 2011. p. 1616-1621 6 p. 5744811. (Conference Proceedings - IEEE Applied Power Electronics Conference and Exposition - APEC).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Energy resources
  • Reactive power

• Small irregular ice crystals in tropical cirrus

  Nousiainen, T., Lindqvist, H., Mcfarquhar, G. M. & Um, J., Nov 2011, In: Journal of the Atmospheric Sciences. 68, 11, p. 2614-2627 14 p.

  Research output: Contribution to journal › Article › peer-review

  • cirrus
  • ice crystal
  • particle
  • crystal
  • parameter

• Small molecule analysis and imaging of fatty acids in the zebra finch song system using time-of-flight-secondary ion mass spectrometry

  Amaya, K. R., Sweedler, J. V. & Clayton, D. F., Aug 2011, In: Journal of Neurochemistry. 118, 4, p. 499-511 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Secondary Ion Mass Spectrometry
  • Secondary ion mass spectrometry
  • Finches
  • Equidae
  • Music

• Small-molecule diagnostics based on functional DNA nanotechnology: A dipstick test for mercury

  Torabi, S. F. & Lu, Y., 2011, In: Faraday Discussions. 149, p. 125-135 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Metal ions
  • Nanotechnology
  • nanotechnology
  • Mercury
  • Molecules