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• 2020

  A Hypothesis Testing Approach to Sharing Logs with Confidence

  Long, Y., Xu, L. & Gunter, C. A., Mar 16 2020, CODASPY 2020 - Proceedings of the 10th ACM Conference on Data and Application Security and Privacy. Association for Computing Machinery, Inc, p. 307-318 12 p. (CODASPY 2020 - Proceedings of the 10th ACM Conference on Data and Application Security and Privacy).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Testing
  • Statistical tests
  • Electric sparks
  • Set theory
  • Computer hardware

• A hypoxia-induced Rab pathway regulates embryo implantation by controlled trafficking of secretory granules

  Bhurke, A., Kannan, A., Neff, A., Ma, Q., Laws, M. J., Taylor, R. N., Bagchi, M. K. & Bagchi, I. C., Jun 23 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 25, p. 14532-14542 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Embryo Implantation
  • Secretory Vesicles
  • Hypoxia
  • Pregnancy
  • Stromal Cells

• AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics

  Casalino, L., Dommer, A., Gaieb, Z., Barros, E. P., Sztain, T., Ahn, S-H., Trifan, A., Brace, A., Bogetti, A., Ma, H., Lee, H., Turilli, M., Khalid, S., Chong, L., Simmerling, C., Hardy, D. J., Maia, J. D. C., Phillips, J. C., Kurth, T., Stern, A. & 8 others, Huang, L., McCalpin, J., Tatineni, M., Gibbs, T., Stone, J. E., Jha, S., Ramanathan, A. & Amaro, R. E., Nov 20 2020, (In preparation) Cold Spring Harbor Laboratory Press, 14 p. (bioRxiv).

  Research output: Working paper

  • SARS Virus
  • Workflow
  • Polysaccharides
  • Computing Methodologies
  • Molecular Dynamics Simulation

• Aiming for advanced intelligibility and proficiency using mobile ASR

  Mroz, A. P., 2020, In: Journal of Second Language Pronunciation.

  Research output: Contribution to journal › Article › peer-review

• AI-optimized detector design for the future Electron-Ion Collider: The dual-radiator RICH case

  Cisbani, E., Del Dotto, A., Fanelli, C., Williams, M., Alfred, M., Barbosa, F., Barion, L., Berdnikov, V., Brooks, W., Cao, T., Contalbrigo, M., Danagoulian, S., Datta, A., Demarteau, M., Denisov, A., Diefenthaler, M., Durum, A., Fields, D., Furletova, Y., Gleason, C. & 27 others, Grosse-Perdekamp, M., Hattawy, M., He, X., Van Hecke, H., Higinbotham, D., Horn, T., Hyde, C., Ilieva, Y., Kalicy, G., Kebede, A., Kim, B., Liu, M., McKisson, J., Mendez, R., Nadel-Turonski, P., Pegg, I., Romanov, D., Sarsour, M., Da Silva, C. L., Stevens, J., Sun, X., Syed, S., Towell, R., Xie, J., Zhao, Z. W., Zihlmann, B. & Zorn, C., May 2020, In: Journal of Instrumentation. 15, 5, P05009.

  Research output: Contribution to journal › Article › peer-review

  • Colliding beam accelerators
  • Detector
  • radiators
  • Radiators
  • Electron

• Air Jet Impingement Cooling of Electronic Devices Using Additively Manufactured Nozzles

  Kwon, B., Foulkes, T., Yang, T., Miljkovic, N. & King, W. P., Feb 2020, In: IEEE Transactions on Components, Packaging and Manufacturing Technology. 10, 2, p. 220-229 10 p., 8809671.

  Research output: Contribution to journal › Article › peer-review

  • Nozzles
  • Cooling
  • Air
  • gallium nitride
  • 3D printers

• AIRR Data Under the E.U. Trade Secrets Directive: Aligning Scientific Practices with Commercial Realities

  Sherkow, J. S. & Minssen, T., Jul 2020, (Accepted/In press) The Harmonization and Protection of Trade Secrets in the EU: An Appraisal of the EU Directive. Schovsbo, J., Minssen, T. & Riis, T. (eds.). Edward Elgar Publishing

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Air temperature, carbon dioxide, and ammonia assessment inside a commercial cage layer barn with manure-drying tunnels

  Zheng, W., Xiong, Y., Gates, R. S., Wang, Y. & Koelkebeck, K. W., Aug 2020, In: Poultry science. 99, 8, p. 3885-3896 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • barns
  • air temperature
  • cages
  • carbon dioxide
  • ammonia

• Airyscan superresolution microscopy: A high-throughput alternative to electron microscopy for the visualization and analysis of fossil pollen

  Romero, I. C., Urban, M. A. & Punyasena, S. W., May 2020, In: Review of Palaeobotany and Palynology. 276, 104192.

  Research output: Contribution to journal › Article › peer-review

  • fossils
  • electron microscopy
  • microscopy
  • pollen
  • visualization

• Ajax in America, or Catharsis in the Time of Terrorism

  Roberts, M., Nov 2020, In: New Theatre Quarterly. 36, 4, p. 306-319

  Research output: Contribution to journal › Article › peer-review

  • Catharsis
  • Terrorism
  • Military Personnel
  • Ren
  • Spectator

• A Joint Fermi-GBM and LIGO/Virgo Analysis of Compact Binary Mergers from the First and Second Gravitational-wave Observing Runs

  LIGO Scientific Collaboration and Virgo Collaboration, Allen, G. D., Ricker, P. M. & Seidel, E., Apr 20 2020, In: The Astrophysical journal. 893, 2, 100.

  Research output: Contribution to journal › Article › peer-review

  • LIGO (observatory)
  • merger
  • gamma ray bursts
  • gamma radiation
  • gravitational waves

• A joint modeling framework of responses and response times to assess learning outcomes

  Wang, S., Zhang, S. & Shen, Y., Jan 2 2020, In: Multivariate Behavioral Research. 55, 1, p. 49-68 20 p.

  Research output: Contribution to journal › Article › peer-review

  • Learning Outcomes
  • Joint Modeling
  • Response Time
  • Reaction Time
  • Learning

• A just and comprehensive strategy for using NlP to address online abuse

  Jurgens, D., Chandrasekharan, E. & Hemphill, L., 2020, ACL 2019 - 57th Annual Meeting of the Association for Computational Linguistics, Proceedings of the Conference. Association for Computational Linguistics (ACL), p. 3658-3666 9 p. (ACL 2019 - 57th Annual Meeting of the Association for Computational Linguistics, Proceedings of the Conference).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Abuse
  • abuse
  • Detriment
  • Reframing
  • Harm

• A Ku-Band Oscillator Utilizing Overtone Lithium Niobate RF-MEMS Resonator for 5G

  Kourani, A., Yang, Y. & Gong, S., Jul 2020, In: IEEE Microwave and Wireless Components Letters. 30, 7, p. 681-684 4 p., 9106332.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Lithium
  • lithium niobates
  • Microwave acoustics
  • microelectromechanical systems
  • Resonators

• A large-scale longitudinal study of flaky tests

  Lam, W., Winter, S., Wei, A., Xie, T., Marinov, D. & Bell, J., Nov 13 2020, In: Proceedings of the ACM on Programming Languages. 4, OOPSLA, 202.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Detectors
  • Testing

• Alcohol sensitivity in women after undergoing bariatric surgery: a cross-sectional study

  Acevedo, M. B., Teran-Garcia, M., Bucholz, K. K., Eagon, J. C., Bartholow, B. D., Burd, N. A., Khan, N., Rowitz, B. & Pepino, M. Y., Apr 2020, In: Surgery for Obesity and Related Diseases. 16, 4, p. 536-544 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Bariatric Surgery
  • Alcohols
  • Cross-Sectional Studies
  • Gastric Bypass
  • Gastrectomy

• A Learning-Based Approach to Synthesizing Invariants for Incomplete Verification Engines

  Neider, D., Madhusudan, P., Saha, S., Garg, P. & Park, D., Oct 1 2020, In: Journal of Automated Reasoning. 64, 7, p. 1523-1552 30 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Engines
  • Learning algorithms
  • Experiments

• Algorithm Design Based on Derived Operation Rules for a System of Reservoirs in Parallel

  Zhao, Q., Cai, X. & Li, Y., May 1 2020, In: Journal of Water Resources Planning and Management. 146, 5, 04020024.

  Research output: Contribution to journal › Article › peer-review

  • Nonlinear programming
  • programming
  • Water supply
  • Biofuels
  • Water

• Algorithmic quoting, trading, and market quality in agricultural commodity futures markets

  Hu, Z., Teresa, S. & Garcia, P., 2020, In: Applied Economics. p. 1-15 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Market Quality
  • Agricultural Commodities
  • Futures Markets
  • Soybean
  • Corn

• A Library of Second-Order Models for Synchronous Machines

  Ajala, O., Dominguez-Garcia, A., Sauer, P. & Liberzon, D., Nov 2020, In: IEEE Transactions on Power Systems. 35, 6, p. 4803-4814 12 p., 9113748.

  Research output: Contribution to journal › Article › peer-review

  • Perturbation techniques
  • Dynamical systems

• Alice Urbach

  Belovari, S., Sep 18 2020, Wien Geschichte Wiki.

  Research output: Other contribution

• A light weight regularization for wave function parameter gradients in quantum Monte Carlo

  Pathak, S. & Wagner, L. K., Aug 1 2020, In: AIP Advances. 10, 8, 085213.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • estimators
  • wave functions
  • optimization
  • gradients
  • estimates

• A Linux in unikernel clothing

  Kuo, H. C., Williams, D., Koller, R. & Mohan, S., Apr 15 2020, Proceedings of the 15th European Conference on Computer Systems, EuroSys 2020. Association for Computing Machinery, Inc, (Proceedings of the 15th European Conference on Computer Systems, EuroSys 2020).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Linux
  • Degradation
  • Data storage equipment

• All-digital histopathology by infrared-optical hybrid microscopy

  Schnell, M., Mittal, S., Falahkheirkhah, K., Mittal, A., Yeh, K., Kenkel, S., Kajdacsy-Balla, A., Carney, P. S. & Bhargava, R., Feb 18 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 7, p. 3388-3396 9 p., 201912400.

  Research output: Contribution to journal › Article › peer-review

  • Microscopy
  • Pathology
  • Coloring Agents
  • Light
  • Optical Devices

• Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

  Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In: PloS one. 15, 1, e0227716.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Saccharum
  • Physiological Stress
  • sugarcane
  • Genes
  • abiotic stress

• Alleviating semantic-level shift: A semi-supervised domain adaptation method for semantic segmentation

  Wang, Z., Wei, Y., Feris, R., Xiong, J., Hwu, W. M., Huang, T. S. & Shi, H., Jun 2020, Proceedings - 2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2020. IEEE Computer Society, p. 4043-4047 5 p. 9150953. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops; vol. 2020-June).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Semantics
  • Labeling
  • Masks
  • Pixels
  • Experiments

• All for one: Centralized optimization of truck platoons to improve roadway infrastructure sustainability

  Gungor, O. E. & Al-Qadi, I. L., May 2020, In: Transportation Research Part C: Emerging Technologies. 114, p. 84-98 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Trucks
  • Sustainable development
  • sustainability
  • infrastructure
  • Pavements

• All-Mode Quantum-Classical Path Integral Simulation of Bacteriochlorophyll Dimer Exciton-Vibration Dynamics

  Bose, A. & Makri, N., Jun 18 2020, In: Journal of Physical Chemistry B. 124, 24, p. 5028-5038 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Excitons
  • Bacteriochlorophylls
  • Dimers
  • dimers
  • Bosons

• Allocation of COVID-19 Vaccines Under Limited Supply

  Chen, X., Li, M., Simchi-Levi, D. & Zhao, T., 2020, (In preparation) Cold Spring Harbor Laboratory Press, 37 p. (medRxiv).

  Research output: Working paper

  • age group
  • death
  • Group
  • decision maker
  • methodology

• All optical fiber thermal vacuum gauge

  Mironov, A. E., Yu, N., Park, S., Tuggle, M., Gragg, J., Kucera, C., Hawkins, T., Ballato, J., Eden, J. G. & Dragic, P., Jan 10 2020, In: JPhys Photonics. 2, 1, 014006.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Vacuum gages
  • vacuum gages
  • Optical fibers
  • optical fibers
  • Fibers

• AlloyMC: Alloy meets model counting

  Yang, J., Wang, W., Marinov, D. & Khurshid, S., Nov 8 2020, ESEC/FSE 2020 - Proceedings of the 28th ACM Joint Meeting European Software Engineering Conference and Symposium on the Foundations of Software Engineering. Devanbu, P., Cohen, M. & Zimmermann, T. (eds.). Association for Computing Machinery, Inc, p. 1541-1545 5 p. (ESEC/FSE 2020 - Proceedings of the 28th ACM Joint Meeting European Software Engineering Conference and Symposium on the Foundations of Software Engineering).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Specifications
  • Linux
  • Graphical user interfaces

• All the president's friends: Political access and firm value

  Brown, J. R. & Huang, J., Nov 2020, In: Journal of Financial Economics. 138, 2, p. 415-431 17 p.

  Research output: Contribution to journal › Article › peer-review

  • Company Value
  • Stock Returns
  • Presidential Elections
  • Corporate Executives
  • Barack Obama

• Alluvial architecture of mid-channel fluvial–tidal barforms: The mesotidal Lower Columbia River, Oregon/Washington, USA

  Prokocki, E. W., Best, J. L., Ashworth, P. J., Sambrook Smith, G. H., Nicholas, A. P., Parsons, D. R. & Simpson, C. J., Dec 2020, In: Sedimentology. 67, 7, p. 3533-3566 34 p.

  Research output: Contribution to journal › Article › peer-review

  • river
  • wind wave
  • transition
  • stratification
  • peak discharge

• Almost Lyapunov functions for nonlinear systems

  Liu, S., Liberzon, D. & Zharnitsky, V., Mar 2020, In: Automatica. 113, 108758.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Lyapunov functions
  • Nonlinear systems
  • Set theory

• Aloe: Verifying reliability of approximate programs in the presence of recovery mechanisms

  Joshi, K., Fernando, V. & Misailovic, S., Feb 22 2020, CGO 2020 - Proceedings of the 18th ACM/IEEE International Symposium on Code Generation and Optimization. Mars, J., Tang, L., Xue, J. & Wu, P. (eds.). Association for Computing Machinery, Inc, p. 56-67 12 p. (CGO 2020 - Proceedings of the 18th ACM/IEEE International Symposium on Code Generation and Optimization).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Recovery
  • Quantitative Analysis
  • Static Analysis
  • Precondition
  • Reliability Analysis

• A Logistic Factorization Model for Recommender Systems With Multinomial Responses

  Wang, Y., Bi, X. & Qu, A., Apr 2 2020, In: Journal of Computational and Graphical Statistics. 29, 2, p. 396-404 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Recommender Systems
  • Logistics
  • Factorization
  • Rating
  • Latent Factors

• A Low-Noise Frequency Synthesizer Using Multiphase Generation and Combining Techniques

  Khashaba, A., Elkholy, A., Megawer, K. M., Ahmed, M. G. & Hanumolu, P. K., Mar 2020, In: IEEE Journal of Solid-State Circuits. 55, 3, p. 592-601 10 p., 8903272.

  Research output: Contribution to journal › Article › peer-review

  • Frequency synthesizers
  • Clocks
  • Jitter
  • Frequency multiplying circuits
  • Crystal oscillators

• ALS/FTLD-Linked Mutations in FUS Glycine Residues Cause Accelerated Gelation and Reduced Interactions with Wild-Type FUS

  Rhine, K., Makurath, M. A., Liu, J., Skanchy, S., Lopez, C., Catalan, K. F., Ma, Y., Fare, C. M., Shorter, J., Ha, T., Chemla, Y. R. & Myong, S., Nov 19 2020, In: Molecular cell. 80, 4, p. 666-681.e8

  Research output: Contribution to journal › Article › peer-review

  • Frontotemporal Dementia With Motor Neuron Disease
  • Glycine
  • Sarcoma
  • Mutation
  • RNA-Binding Proteins

• Altered Hippocampal Epigenetic Regulation Underlying Reduced Cognitive Development in Response to Early Life Environmental Insults

  Schachtschneider, K. M., Welge, M. E., Auvil, L., Chaki, S., Rund, L. A., Madsen, O., Elmore, M. R. P., Johnson, R. W., Groenen, M. A. M. & Schook, L. B., Feb 4 2020, In: Genes. 11, 2, 162.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Epigenomics
  • Genes
  • Gene Ontology
  • DNA Methylation
  • Cognition

• A marine microbiome antifungal targets urgent-threat drug-resistant fungi

  Zhang, F., Zhao, M., Braun, D. R., Ericksen, S. S., Piotrowski, J. S., Nelson, J., Peng, J., Ananiev, G. E., Chanana, S., Barns, K., Fossen, J., Sanchez, H., Chevrette, M. G., Guzei, I. A., Zhao, C., Guo, L., Tang, W., Currie, C. R., Rajski, S. R., Audhya, A. & 2 others, Andes, D. R. & Bugni, T. S., Nov 20 2020, In: Science (New York, N.Y.). 370, 6519, p. 974-978 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Microbiota
  • Fungi
  • Candida
  • Lead
  • Pharmaceutical Preparations

• A mass balance approach to urban water analysis using multi-resolution data

  Hastie, A. G., Chini, C. M. & Stillwell, A. S., Jan 1 2020, (Accepted/In press) In: Journal of Industrial Ecology.

  Research output: Contribution to journal › Article › peer-review

  • water analysis
  • urban water
  • mass balance
  • water
  • energy

• A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids

  Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J. V. & Zhao, H., Jul 1 2020, In: Biotechnology and bioengineering. 117, 7, p. 2131-2138 8 p.

  Research output: Contribution to journal › Article › peer-review

  • High-Throughput Screening Assays
  • Fatty Acid Synthases
  • Mass spectrometry
  • Fatty acids
  • Screening

• A Matrix-Valued Kuramoto Model

  Bronski, J. C., Carty, T. E. & Simpson, S. E., Jan 1 2020, In: Journal of Statistical Physics. 178, 2, p. 595-624 30 p.

  Research output: Contribution to journal › Article › peer-review

  • Kuramoto Model
  • Phase Locking
  • oscillators
  • matrices
  • Twist

• A mechanism for balancing accuracy and scope in cross-machine black-box GPU performance modeling

  Stevens, J. D. & Klöckner, A., Nov 1 2020, In: International Journal of High Performance Computing Applications. 34, 6, p. 589-614 26 p.

  Research output: Contribution to journal › Article › peer-review

  • Performance Modeling
  • Black Box
  • Balancing
  • Graphics processing unit
  • kernel

• Ameliorative Effects of Phytochemical Ingestion on Viral Infection in Honey Bees

  Hsieh, E. M., Berenbaum, M. R. & Dolezal, A. G., Oct 13 2020, In: Insects. 11, 10, p. 1-18 18 p., 698.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • caffeine
  • honey bees
  • chemical constituents of plants
  • ingestion
  • Israeli acute paralysis virus

• A memory-oriented MAC-layer design for future IoT systems

  Odat, E., Hamza, D., Shihada, B. & Shamma, J. S., Nov 1 2020, In: Ad Hoc Networks. 108, 102276.

  Research output: Contribution to journal › Article › peer-review

  • Medium access control
  • Internet of things
  • Throughput
  • Data storage equipment
  • Network protocols

• Amentoflavone: A bifunctional metal chelator that controls the formation of neurotoxic soluble Aβ₄₂oligomers

  Sun, L., Sharma, A. K., Han, B. H. & Mirica, L. M., Sep 2 2020, In: ACS Chemical Neuroscience. 11, 17, p. 2741-2752 12 p.

  Research output: Contribution to journal › Article › peer-review

  • amentoflavone
  • Chelating Agents
  • Metals
  • Amyloid
  • Alzheimer Disease

• A Metabolic Pathway for Activation of Dietary Glucosinolates by a Human Gut Symbiont

  Liou, C. S., Sirk, S. J., Diaz, C. A. C., Klein, A. P., Fischer, C. R., Higginbottom, S. K., Erez, A., Donia, M. S., Sonnenburg, J. L. & Sattely, E. S., Feb 20 2020, In: Cell. 180, 4, p. 717-728.e19

  Research output: Contribution to journal › Article › peer-review

  • Glucosinolates
  • Metabolic Networks and Pathways
  • Metabolic Activation
  • Chemical activation
  • Bacteroides thetaiotaomicron

• A method for evaluating CRCP performance based on edge-loaded FWD test

  Zhang, Y., Roesler, J. R. & Huang, Z., Apr 1 2020, In: Materials and Structures/Materiaux et Constructions. 53, 2, 46.

  Research output: Contribution to journal › Article › peer-review

  • Concrete pavements
  • Reinforced concrete
  • Cracks
  • Elastic moduli
  • Reinforcement

• A micro-extraction method for use with 4 mm plate geometry in the Dynamic Shear Rheometer to evaluate asphalt binder rheology

  Filonzi, A., Lee, S. K., Ferreira, W., Hajj, R. & Bhasin, A., Aug 20 2020, In: Construction and Building Materials. 252, 119024.

  Research output: Contribution to journal › Article › peer-review

  • asphalt
  • Rheometers
  • Rheology
  • Asphalt
  • Binders