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• Article

  Damage, Healing, and Remodeling in Optogenetic Skeletal Muscle Bioactuators

  Raman, R., Grant, L., Seo, Y., Cvetkovic, C., Gapinske, M., Palasz, A., Dabbous, H., Kong, H., Pinera, P. P. & Bashir, R., Jun 21 2017, In: Advanced Healthcare Materials. 6, 12, 1700030.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Muscle
  • Skeletal Muscle
  • Three-Dimensional Printing
  • Technology

• Design and integration of a problem-based biofabrication course into an undergraduate biomedical engineering curriculum

  Raman, R., Mitchell, M., Perez-Pinera, P., Bashir, R. & DeStefano, L., Sep 21 2016, In: Journal of Biological Engineering. 10, 1, 10.

  Research output: Contribution to journal › Article › peer-review

  • Biomedical Engineering
  • Biomedical engineering
  • Curricula
  • Curriculum
  • Students

• Detecting sepsis by observing neutrophil motility

  Hassan, U., Valera, E. & Bashir, R., Apr 1 2018, In: Nature biomedical engineering. 2, 4, p. 197-198 2 p.

  Research output: Contribution to journal › Article › peer-review

• Detection and quantification of methylation in DNA using solid-state nanopores

  Shim, J., Humphreys, G. I., Venkatesan, B. M., Munz, J. M., Zou, X., Sathe, C., Schulten, K., Kosari, F., Nardulli, A. M., Vasmatzis, G. & Bashir, R., 2013, In: Scientific reports. 3, 1389.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • DNA Methylation
  • Methylation
  • Epigenomics
  • 5-Methylcytosine

• Detection of methylation on dsDNA using nanopores in a MoS₂ membrane

  Shim, J., Banerjee, S., Qiu, H., Smithe, K. K. H., Estrada, D., Bello, J., Pop, E., Schulten, K. & Bashir, R., Oct 31 2017, In: Nanoscale. 9, 39, p. 14836-14845 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Methylation
  • Nanopores
  • Membranes
  • DNA
  • Carrier Proteins

• Detection of silver ions using dielectrophoretic tweezers-based force spectroscopy

  Choi, S., Lee, G., Park, I. S., Son, M., Kim, W., Lee, H., Lee, S. Y., Na, S., Yoon, D. S., Bashir, R., Park, J. & Lee, S. W., Nov 15 2016, In: Analytical Chemistry. 88, 22, p. 10867-10875 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Polynucleotides
  • Spectroscopy
  • Silver
  • Metal ions
  • Heavy ions

• Direct characterization of hydrodynamic loading on a microelectromechanical systems microstructure

  Mehrnezhad, A., Bashir, R. & Park, K., Mar 14 2016, In: Applied Physics Letters. 108, 11, 114101.

  Research output: Contribution to journal › Article › peer-review

  • microelectromechanical systems
  • hydrodynamics
  • microstructure
  • characterization
  • viscous fluids

• Direct DNA sequencing using nanopore sensors

  Bashir, R., Apr 1 2013, In: Genetic Engineering and Biotechnology News. 33, 7, p. 34-35+45

  Research output: Contribution to journal › Article › peer-review

• Dissolution chemistry and biocompatibility of single-crystalline silicon nanomembranes and associated materials for transient electronics

  Hwang, S. W., Park, G., Edwards, C., Corbin, E. A., Kang, S. K., Cheng, H., Song, J. K., Kim, J. H., Yu, S., Ng, J., Lee, J. E., Kim, J., Yee, C., Bhaduri, B., Omennetto, F. G., Huang, Y., Bashir, R., Goddard, L., Popescu, G., Lee, K. M. & 1 others, Rogers, J. A., Jun 24 2014, In: ACS Nano. 8, 6, p. 5843-5851 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Biocompatibility
  • biocompatibility
  • Silicon
  • Dissolution
  • Crystalline materials

• DNA sensing using nanocrystalline surface-enhanced Al₂O ₃ nanopore sensors

  Venkatesan, B. M., Shah, A. B., Zuo, J. M. & Bashir, R., Apr 23 2010, In: Advanced Functional Materials. 20, 8, p. 1266-1275 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • DNA
  • deoxyribonucleic acid
  • sensors
  • Surface charge

• Dynamic mechanical measurement of the viscoelasticity of single adherent cells

  Corbin, E. A., Adeniba, O. O., Ewoldt, R. H. & Bashir, R., Feb 29 2016, In: Applied Physics Letters. 108, 9, 093701.

  Research output: Contribution to journal › Article › peer-review

  • mechanical measurement
  • viscoelasticity
  • cells
  • sensors
  • microelectromechanical systems

• Effect of biointerfacing linker chemistries on the sensitivity of silicon nanowires for protein detection

  Dorvel, B., Reddy, B. & Bashir, R., Oct 15 2013, In: Analytical Chemistry. 85, 20, p. 9493-9500 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanowires
  • Silicon
  • Oxides
  • Proteins
  • Polyethylene glycols

• Electrical cell counting process characterization in a microfluidic impedance cytometer

  Hassan, U. & Bashir, R., Oct 2014, In: Biomedical microdevices. 16, 5, p. 697-704 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Microfluidics
  • Electric Impedance
  • Acoustic impedance
  • Dilution
  • Blood

• Electrical detection of nucleic acid amplification using an on-chip quasi-reference electrode and a PVC REFET

  Salm, E., Zhong, Y., Reddy, B., Duarte-Guevara, C., Swaminathan, V., Liu, Y. S. & Bashir, R., Jul 15 2014, In: Analytical Chemistry. 86, 14, p. 6968-6975 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Polyvinyl Chloride
  • Field effect transistors
  • Ion sensitive field effect transistors
  • Amplification
  • Nucleic Acids

• Electrochemistry at the edge of a single graphene layer in a nanopore

  Banerjee, S., Shim, J., Rivera, J., Jin, X., Estrada, D., Solovyeva, V., You, X., Pak, J., Pop, E., Aluru, N. & Bashir, R., Jan 22 2013, In: ACS Nano. 7, 1, p. 834-843 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Electrochemistry
  • Graphite
  • electrochemistry
  • Graphene

• Electron beam induced local crystallization of HfO₂ nanopores for biosensing applications

  Shim, J., Rivera, J. A. & Bashir, R., Nov 21 2013, In: Nanoscale. 5, 22, p. 10887-10893 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Crystallization
  • Electron beams
  • Graphite
  • Membranes

• Electronic desalting for controlling the ionic environment in droplet-based biosensing platforms

  Swaminathan, V. V., Dak, P., Reddy, B., Salm, E., Duarte-Guevara, C., Zhong, Y., Fischer, A., Liu, Y. S., Alam, M. A. & Bashir, R., Feb 2 2015, In: Applied Physics Letters. 106, 5, 053105.

  Research output: Contribution to journal › Article › peer-review

  • salts
  • platforms
  • electronics
  • platinum black
  • electrodes

• Enabling microscale and nanoscale approaches for bioengineered cardiac tissue

  Chan, V., Raman, R., Cvetkovic, C. & Bashir, R., Mar 26 2013, In: ACS Nano. 7, 3, p. 1830-1837 8 p.

  Research output: Contribution to journal › Article › peer-review

  • microbalances
  • Tissue
  • Carbon Nanotubes
  • Methacrylates
  • gelatins

• Engineering as a new frontier for translational medicine

  Chien, S., Bashir, R., Nerem, R. M. & Pettigrew, R., Apr 1 2015, In: Science Translational Medicine. 7, 281, 281fs13.

  Research output: Contribution to journal › Article › peer-review

  • Translational Medical Research
  • Medicine
  • Delivery of Health Care
  • Therapeutics

• Engineering geometrical 3-dimensional untethered in vitro neural tissue mimic

  Pagan-Diaz, G. J., Ramos-Cruz, K. P., Sam, R., Kandel, M. E., Aydin, O., Saif, T. M. A., Popescu, G. & Bashir, R., Dec 17 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 51, p. 25932-25940 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Biomedical Research
  • In Vitro Techniques
  • Therapeutic Human Experimentation
  • Human Embryonic Stem Cells
  • Embryonic Stem Cells

• Enhanced biosensing resolution with foundry fabricated individually addressable dual-gated ISFETs

  Duarte-Guevara, C., Lai, F. L., Cheng, C. W., Reddy, B., Salm, E., Swaminathan, V., Tsui, Y. K., Tuan, H. C., Kalnitsky, A., Liu, Y. S. & Bashir, R., Aug 19 2014, In: Analytical Chemistry. 86, 16, p. 8359-8367 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Ion sensitive field effect transistors
  • Foundries
  • Transistors
  • Silicon
  • Semiconductor materials

• Enhanced sub-micron colloidal particle separation with interdigitated microelectrode arrays using mixed AC/DC dielectrophoretic scheme

  Swaminathan, V. V., Shannon, M. A. & Bashir, R., Apr 2015, In: Biomedical microdevices. 17, 2

  Research output: Contribution to journal › Article › peer-review

  • Microelectrodes
  • Electrodes
  • 1-(2-(dodecyloxy)ethyl)pyrrolidine hydrochloride
  • DNA Viruses
  • Static Electricity

• Evidence of differential mass change rates between human breast cancer cell lines in culture

  Corbin, E. A., Adeniba, O. O., Cangellaris, O. V., King, W. P. & Bashir, R., Mar 1 2017, In: Biomedical microdevices. 19, 1, 10.

  Research output: Contribution to journal › Article › peer-review

  • Cell culture
  • Cells
  • Breast Neoplasms
  • Cell Line
  • Growth

• Fabrication and characterization of optogenetic, multi-strip cardiac muscles

  Chan, V., Neal, D. M., Uzel, S. G. M., Kim, H., Bashir, R. & Asada, H. H., May 21 2015, In: Lab on a chip. 15, 10, p. 2258-2268 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Muscle
  • Myocardium
  • Fabrication
  • Tissue engineering

• Flow metering characterization within an electrical cell counting microfluidic device

  Hassan, U., Watkins, N. N., Edwards, C. & Bashir, R., Apr 21 2014, In: Lab on a chip. 14, 8, p. 1469-1476 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Microfluidics
  • Blood
  • Fluids
  • Flow of fluids

• Fluidic measurement of electric field sensitivity of Ti-GaAs Schottky junction gated field effect biosensors

  Chang, W. J., Suk, H. J., Newaz, A. K. M., Wallace, K. D., Wickline, S. A., Solin, S. A. & Bashir, R., Oct 2010, In: Biomedical microdevices. 12, 5, p. 849-854 6 p.

  Research output: Contribution to journal › Article › peer-review

  • gallium arsenide
  • Biosensing Techniques
  • Biosensors
  • Fluidics
  • Semiconductors

• Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction

  Lee, M. K., Rich, M. H., Shkumatov, A., Jeong, J. H., Boppart, M. D., Bashir, R., Gillette, M. U., Lee, J. & Kong, H., Jan 1 2015, In: Advanced Healthcare Materials. 4, 2, p. 195-201 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Glaciers
  • Ice Cover
  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Microchannels

• Graphene-Based Patterning and Differentiation of C2C12 Myoblasts

  Bajaj, P., Rivera, J. A., Marchwiany, D., Solovyeva, V. & Bashir, R., Jul 2014, In: Advanced Healthcare Materials. 3, 7, p. 995-1000 6 p.

  Research output: Contribution to journal › Article › peer-review

• Graphene-Based Platform for Infrared Near-Field Nanospectroscopy of Water and Biological Materials in an Aqueous Environment

  Khatib, O., Wood, J. D., McLeod, A. S., Goldflam, M. D., Wagner, M., Damhorst, G. L., Koepke, J. C., Doidge, G. P., Rangarajan, A., Bashir, R., Pop, E., Lyding, J. W., Thiemens, M. H., Keilmann, F. & Basov, D. N., Aug 25 2015, In: ACS Nano. 9, 8, p. 7968-7975 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Graphite
  • Biological materials
  • Graphene
  • Near field scanning optical microscopy
  • viruses

• Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya, and Dengue at point-of-care

  Ganguli, A., Ornob, A., Yu, H., Damhorst, G. L., Chen, W., Sun, F., Bhuiya, A., Cunningham, B. T. & Bashir, R., Dec 1 2017, In: Biomedical microdevices. 19, 4, 73.

  Research output: Contribution to journal › Article › peer-review

  • Smartphone
  • Dengue
  • Point-of-Care Systems
  • Smartphones
  • Blood

• High-Resolution Projection Microstereolithography for Patterning of Neovasculature

  Raman, R., Bhaduri, B., Mir, M., Shkumatov, A., Lee, M. K., Popescu, G., Kong, H. & Bashir, R., Mar 9 2016, In: Advanced Healthcare Materials. 5, 5, p. 610-619 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Tissue engineering
  • Assays
  • Immunosorbents
  • Tissue

• In situ self-folding assembly of a multi-walled hydrogel tube for uniaxial sustained molecular release

  Baek, K., Jeong, J. H., Shkumatov, A., Bashir, R. & Kong, H., Oct 18 2013, In: Advanced Materials. 25, 39, p. 5568-5573 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Gels
  • poly(ethylene glycol)diacrylate
  • Intercellular Signaling Peptides and Proteins

• Investigating the Life Expectancy and Proteolytic Degradation of Engineered Skeletal Muscle Biological Machines

  Cvetkovic, C., Ferrall-Fairbanks, M. C., Ko, E., Grant, L., Kong, H., Platt, M. O. & Bashir, R., Dec 1 2017, In: Scientific reports. 7, 1, 3775.

  Research output: Contribution to journal › Article › peer-review

  • Life Expectancy
  • Peptide Hydrolases
  • Skeletal Muscle
  • Tissue Engineering
  • Matrix Metalloproteinases

• Localized Dielectric Loss Heating in Dielectrophoresis Devices

  Kwak, T. J., Hossen, I., Bashir, R., Chang, W. J. & Lee, C. H., Dec 1 2019, In: Scientific reports. 9, 1, 18977.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Heating
  • Temperature
  • Equipment and Supplies
  • Electrodes
  • Hot Temperature

• Long-Term Cryopreservation and Revival of Tissue-Engineered Skeletal Muscle

  Grant, L., Raman, R., Cvetkovic, C., Ferrall-Fairbanks, M. C., Pagan-Diaz, G. J., Hadley, P., Ko, E., Platt, M. O. & Bashir, R., Jul 1 2019, In: Tissue Engineering - Part A. 25, 13-14, p. 1023-1036 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Cryopreservation
  • Muscle
  • Tissue
  • Skeletal Muscle
  • Freezing

• Magnetophoretic-based microfluidic device for DNA Concentration

  Shim, S., Shim, J., Taylor, W. R., Kosari, F., Vasmatzis, G., Ahlquist, D. A. & Bashir, R., Apr 1 2016, In: Biomedical microdevices. 18, 2, p. 1-8 8 p., 28.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Microfluidics
  • DNA
  • Nanofluidics
  • Nucleic acids

• Material-mediated proangiogenic factor release pattern modulates quality of regenerated blood vessels

  Rich, M. H., Lee, M. K., Baek, K., Jeong, J. H., Kim, D. H., Millet, L. J., Bashir, R. & Kong, H., Dec 28 2014, In: Journal of Controlled Release. 196, p. 363-369 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Vascular Endothelial Growth Factor A
  • Blood Vessels
  • poly(ethylene glycol)diacrylate
  • Gels

• Matrix Topography Regulates Synaptic Transmission at the Neuromuscular Junction

  Ko, E., Yu, S. J., Pagan-Diaz, G. J., Mahmassani, Z., Boppart, M. D., Im, S. G., Bashir, R. & Kong, H., Mar 20 2019, In: Advanced Science. 6, 6, 1801521.

  Research output: Contribution to journal › Article › peer-review

  • Neuromuscular Junction
  • Topography
  • Skeletal Muscle Fibers
  • Synaptic Transmission
  • topography

• Measurement of adherent cell mass and growth

  Park, K., Millet, L. J., Kim, N., Li, H., Jin, X., Popescu, G., Aluru, N. R., Hsia, K. J. & Bashir, R., Nov 30 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 48, p. 20691-20696 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Growth
  • Micro-Electrical-Mechanical Systems
  • Cell Cycle
  • Elastic Modulus
  • Tissue Engineering

• Measuring physical properties of neuronal and glial cells with resonant microsensors

  Corbin, E. A., Millet, L. J., Keller, K. R., King, W. P. & Bashir, R., May 20 2014, In: Analytical Chemistry. 86, 10, p. 4864-4872 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Neuroglia
  • Microsensors
  • Physical properties
  • Sensors
  • Cells

• Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

  Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In: Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Shape optimization
  • Muscle
  • Tissue
  • Skeletal Muscle
  • Muscles

• Microfluidic CD4⁺ and CD8⁺ T lymphocyte counters for point-of-care HIV diagnostics using whole blood

  Watkins, N. N., Hassan, U., Damhorst, G., Ni, H., Vaid, A., Rodriguez, W. & Bashir, R., Dec 4 2013, In: Science Translational Medicine. 5, 214, 214ra170.

  Research output: Contribution to journal › Article › peer-review

  • Microfluidics
  • Point-of-Care Systems
  • HIV
  • T-Lymphocytes
  • Equipment and Supplies

• Microfluidic differential immunocapture biochip for specific leukocyte counting

  Hassan, U., Watkins, N. N., Reddy, B., Damhorst, G. & Bashir, R., Apr 1 2016, In: Nature Protocols. 11, 4, p. 714-726 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Biochips
  • Biosensors
  • Microfluidics
  • Leukocytes
  • Biosensing Techniques

• Micro-masonry of MEMS sensors and actuators

  Zhang, Y., Keum, H., Park, K., Bashir, R. & Kim, S., Apr 2014, In: Journal of Microelectromechanical Systems. 23, 2, p. 308-314 7 p., 6570758.

  Research output: Contribution to journal › Article › peer-review

  • MEMS
  • Actuators
  • Microfabrication
  • Sensors
  • Rapid thermal annealing

• Micromechanical properties of hydrogels measured with MEMS resonant sensors

  Corbin, E. A., Millet, L. J., Pikul, J. H., Johnson, C. L., Georgiadis, J. G., King, W. P. & Bashir, R., Apr 1 2013, In: Biomedical microdevices. 15, 2, p. 311-319 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • MEMS
  • poly(ethylene glycol)diacrylate
  • Electrohydrodynamics
  • Drug delivery

• Micro-patterning of mammalian cells on suspended MEMS resonant sensors for long-term growth measurements

  Corbin, E. A., Dorvel, B. R., Millet, L. J., King, W. P. & Bashir, R., Apr 21 2014, In: Lab on a chip. 14, 8, p. 1401-1404 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Micro-Electrical-Mechanical Systems
  • Cells
  • MEMS
  • Sensors
  • Growth

• Mobile Platform for Multiplexed Detection and Differentiation of Disease-Specific Nucleic Acid Sequences, Using Microfluidic Loop-Mediated Isothermal Amplification and Smartphone Detection

  Chen, W., Yu, H., Sun, F., Ornob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Nov 7 2017, In: Analytical chemistry. 89, 21, p. 11219-11226 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nucleic acid sequences
  • Pathogens
  • Microfluidics
  • Amplification
  • Smartphones

• Modeling and Analysis of Intercalant Effects on Circular DNA Conformation

  Krueger, E., Shim, J., Fathizadeh, A., Chang, A. N., Subei, B., Yocham, K. M., Davis, P. H., Graugnard, E., Khalili-Araghi, F., Bashir, R., Estrada, D. & Fologea, D., Sep 27 2016, In: ACS Nano. 10, 9, p. 8910-8917 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Circular DNA
  • Conformations
  • DNA
  • deoxyribonucleic acid
  • Nanopores

• Monolayer MoS ₂ Nanoribbon Transistors Fabricated by Scanning Probe Lithography

  Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., Van Der Zande, A. M. & King, W. P., Mar 13 2019, In: Nano letters. 19, 3, p. 2092-2098 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanoribbons
  • Carbon Nanotubes
  • Monolayers
  • Lithography
  • Transistors

• Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

  Hassan, U., Zhu, R. & Bashir, R., Apr 21 2018, In: Lab on a chip. 18, 8, p. 1231-1240 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Biosensing Techniques
  • Biosensors
  • Sepsis
  • Multivariate Analysis
  • Systemic Inflammatory Response Syndrome