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• Vapor-phase deposition of monofunctional alkoxysilanes for sub-nanometer-level biointerfacing on silicon oxide surfaces

  Dorvel, B., Block, I., Reddy, B., Mathias, P., Clare, S. E., Cunningham, B., Bergstrom, D. E. & Bashir, R., Jan 8 2010, In: Advanced Functional Materials. 20, 1, p. 87-95 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Silanes
  • Silicon oxides
  • Monolayers
  • silanes
  • silicon oxides

• Utilization and control of bioactuators across multiple length scales

  Chan, V., Asada, H. H. & Bashir, R., Feb 21 2014, In: Lab on a chip. 14, 4, p. 653-670 18 p.

  Research output: Contribution to journal › Review article › peer-review

  • Tissue
  • Cells
  • Muscle
  • Protozoa
  • Adenosine Triphosphatases

• Tip-based nanofabrication of arbitrary shapes of graphene nanoribbons for device applications

  Hu, H., Banerjee, S., Estrada, D., Bashir, R. & King, W. P., 2015, In: RSC Advances. 5, 46, p. 37006-37012 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanoribbons
  • Graphite
  • Carbon Nanotubes
  • Graphene
  • Nanotechnology

• Three-dimensional photopatterning of hydrogels using stereolithography for long-term cell encapsulation

  Chan, V., Zorlutuna, P., Jeong, J. H., Kong, H. & Bashir, R., Aug 21 2010, In: Lab on a chip. 10, 16, p. 2062-2070 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Hydrogels
  • Encapsulation
  • Polyethylene glycols
  • poly(ethylene glycol)diacrylate

• Three-dimensionally printed biological machines powered by skeletal muscle

  Cvetkovic, C., Raman, R., Chan, V., Williams, B. J., Tolish, M., Bajaj, P., Sakar, M. S., Asada, H. H., Saif, M. T. A. & Bashir, R., Jul 15 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 28, p. 10125-10130 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Skeletal Muscle
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Locomotion
  • Electric Power Supplies
  • Three-Dimensional Printing

• Temperature measurement in fluid directly at the surface with high spatial resolution using a covalently attached fluorescent dye

  Reddy, B., Dorvel, B. R., Elibol, O. H., Nair, P. R., Alam, M. A., Bergstrom, D. E. & Bashir, R., 2010, 2010 18th Biennial University/Government/Industry Micro-Nano Symposium, UGIM 2010 - Proceedings. 5508917. (Biennial University/Government/Industry Microelectronics Symposium - Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Dyes
  • Temperature measurement
  • Fluids
  • Fluorophores
  • Temperature

• Stiffness of the substrate influences the phenotype of embryonic chicken cardiac myocytes

  Bajaj, P., Tang, X., Saif, T. A. & Bashir, R., Dec 15 2010, In: Journal of Biomedical Materials Research - Part A. 95, 4, p. 1261-1269 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Tissue culture
  • Polyacrylates
  • Substrates
  • Stiffness
  • Adhesion

• Stereolithographic 3D bioprinting for biomedical applications

  Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bioprinting
  • Stereolithography
  • Medical applications
  • Regenerative Medicine
  • Fabrication

• Stacked graphene-Al ₂O ₃ nanopore sensors for sensitive detection of DNA and DNA-protein complexes

  Venkatesan, B. M., Estrada, D., Banerjee, S., Jin, X., Dorgan, V. E., Bae, M. H., Aluru, N. R., Pop, E. & Bashir, R., Jan 24 2012, In: ACS Nano. 6, 1, p. 441-450 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Graphite
  • Graphene
  • DNA
  • Proteins

• Smartphone-imaged microfluidic biochip for measuring CD64 expression from whole blood

  Ghonge, T., Ceylan Koydemir, H., Valera, E., Berger, J., Garcia, C., Nawar, N., Tiao, J., Damhorst, G. L., Ganguli, A., Hassan, U., Ozcan, A. & Bashir, R., Jul 7 2019, In: Analyst. 144, 13, p. 3925-3935 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Flow cytometry
  • Biochips
  • Smartphone
  • Microfluidics
  • flow cytometry

• Smartphone-Imaged HIV-1 Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) on a Chip from Whole Blood

  Damhorst, G. L., Duarte-Guevara, C., Chen, W., Ghonge, T., Cunningham, B. T. & Bashir, R., Sep 1 2015, In: Engineering. 1, 3, p. 324-335 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Viruses
  • Transcription
  • Amplification
  • Smartphones
  • Blood

• Slowing DNA transport using graphene-DNA interactions

  Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In: Advanced Functional Materials. 25, 6, p. 936-946 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Graphite
  • Graphene
  • Nanopores
  • graphene
  • interactions

• Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines

  Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In: Advanced Functional Materials. 28, 23, 1801145.

  Research output: Contribution to journal › Article › peer-review

  • walking machines
  • Scaffolds
  • Tissue
  • Robotics
  • Actuators

• Silicon nanowires with high-k hafnium oxide dielectrics for sensitive detection of small nucleic acid oligomers

  Dorvel, B. R., Reddy, B., Go, J., Duarte Guevara, C., Salm, E., Alam, M. A. & Bashir, R., Jul 24 2012, In: ACS Nano. 6, 7, p. 6150-6164 15 p.

  Research output: Contribution to journal › Article › peer-review

  • hafnium oxide
  • Hafnium oxides
  • Nucleic acids
  • Oligomers
  • hafnium oxides

• Robust label-free microRNA detection using one million ISFET array

  Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In: Biomedical microdevices. 20, 2, 1 p.

  Research output: Contribution to journal › Article › peer-review

  • Ion sensitive field effect transistors
  • Nucleic acids
  • Assays
  • Nucleic Acids
  • Molecules

• Resonant MEMS mass sensors for measurement of microdroplet evaporation

  Park, K., Kim, N., Morisette, D. T., Aluru, N. R. & Bashir, R., Apr 5 2012, In: Journal of Microelectromechanical Systems. 21, 3, p. 702-711 10 p., 6176181.

  Research output: Contribution to journal › Article › peer-review

  • Evaporation
  • MEMS
  • Sensors
  • Dimethyl sulfoxide
  • Self assembly

• Rapid thermal lysis of cells using silicon-diamond microcantilever heaters

  Privorotskaya, N., Liu, Y. S., Lee, J., Zeng, H., Carlisle, J. A., Radadia, A., Millet, L., Bashir, R. & King, W. P., 2010, In: Lab on a chip. 10, 9, p. 1135-1141 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Diamond
  • Silicon
  • Diamonds
  • Fibroblasts
  • Hot Temperature

• Point-of-care sensors for the management of sepsis

  Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In: Nature biomedical engineering. 2, 9, p. 640-648 9 p.

  Research output: Contribution to journal › Review article › peer-review

  • Point-of-Care Systems
  • Sepsis
  • Health
  • Sensors
  • Infection

• Pixelated spatial gene expression analysis from tissue

  Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In: Nature communications. 9, 1, 202.

  Research output: Contribution to journal › Article › peer-review

  • gene expression
  • Gene expression
  • Tissue
  • ribonucleic acids
  • Amplification

• Piezoresistive microcantilevers from ultrananocrystalline diamond

  Privorotskaya, N. L., Zeng, H., Carlisle, J. A., Bashir, R. & King, W. P., Jan 1 2010, 2010 Solid-State Sensors, Actuators, and Microsystems Workshop. Monk, D. J. & Turner, K. L. (eds.). Transducer Research Foundation, p. 250-253 4 p. (Technical Digest - Solid-State Sensors, Actuators, and Microsystems Workshop).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Diamonds
  • Boron
  • Temperature
  • Microsystems
  • Electric properties

• Piezoresistive microcantilevers from ultrananocrystalline diamond

  Privorotskaya, N. L., Zeng, H., Carlisle, J. A., Bashir, R. & King, W. P., Oct 1 2010, In: Journal of Microelectromechanical Systems. 19, 5, p. 1234-1242 9 p., 5567124.

  Research output: Contribution to journal › Article › peer-review

  • Diamonds
  • Temperature
  • Boron
  • Microsystems
  • Electric properties

• Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes

  Neiman, J. A. S., Raman, R., Chan, V., Rhoads, M. G., Raredon, M. S. B., Velazquez, J. J., Dyer, R. L., Bashir, R., Hammond, P. T. & Griffith, L. G., Apr 1 2015, In: Biotechnology and bioengineering. 112, 4, p. 777-787 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Hepatocytes
  • Stereolithography
  • Hydrogels
  • Scaffolds
  • Polyethylene Glycol Dimethacrylate Hydrogel

• Perspective: The promise of multi-cellular engineered living systems

  Kamm, R. D., Bashir, R., Arora, N., Dar, R. D., Gillette, M. U., Griffith, L. G., Kemp, M. L., Kinlaw, K., Levin, M., Martin, A. C., McDevitt, T. C., Nerem, R. M., Powers, M. J., Saif, T. A., Sharpe, J., Takayama, S., Takeuchi, S., Weiss, R., Ye, K., Yevick, H. G. & 1 others, Zaman, M. H., Dec 1 2018, In: APL Bioengineering. 2, 4, 040901.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Bioprinting
  • Cytology
  • Stem cells
  • Organoids
  • Assays

• Optomechanical microrheology of single adherent cancer cells

  Adeniba, O. O., Corbin, E. A., Ewoldt, R. H. & Bashir, R., Mar 1 2018, In: APL Bioengineering. 2, 1, 016108.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cells
  • Viscoelastic Substances
  • Cell membranes
  • Soft materials
  • Mechanical properties

• Optomechanical measurement of the stiffness of single adherent cells

  Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In: Lab on a chip. 15, 17, p. 3460-3464 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Substrates
  • Stiffness
  • Mechanical properties
  • Phase shift
  • Lasers

• Optogenetic skeletal muscle-powered adaptive biological machines

  Raman, R., Cvetkovic, C., Uzel, S. G. M., Platt, R. J., Sengupta, P., Kamm, R. D. & Bashir, R., Mar 29 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 13, p. 3497-3502 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Bioengineering
  • Skeleton
  • Locomotion
  • Skeletal Muscle

• On-chip PMA labeling of foodborne pathogenic bacteria for viable qPCR and qLAMP detection

  Duarte-Guevara, P., Duarte-Guevara, C., Ornob, A. & Bashir, R., Aug 1 2016, In: Microfluidics and Nanofluidics. 20, 8, 114.

  Research output: Contribution to journal › Article › peer-review

  • propidium monoazide
  • Bacteria
  • bacteria
  • marking
  • Labeling

• On-chip metal/polypyrrole quasi-reference electrodes for robust ISFET operation

  Duarte-Guevara, C., Swaminathan, V. V., Burgess, M., Reddy, B., Salm, E., Liu, Y. S., Rodriguez-Lopez, J. & Bashir, R., May 21 2015, In: Analyst. 140, 10, p. 3630-3641 12 p.

  Research output: Contribution to journal › Article › peer-review

  • polypyrrole
  • Ion sensitive field effect transistors
  • Polypyrroles
  • Ion-Selective Electrodes
  • Metals

• On-chip electrical detection of parallel loop-mediated isothermal amplification with DG-BioFETs for the detection of foodborne bacterial pathogens

  Duarte-Guevara, C., Swaminathan, V. V., Reddy, B., Huang, J. C., Liu, Y. S. & Bashir, R., Jan 1 2016, In: RSC Advances. 6, 106, p. 103872-103887 16 p.

  Research output: Contribution to journal › Article › peer-review

  • Pathogens
  • Amplification
  • Assays
  • Gold
  • Nucleic acids

• New technologies for measuring single cell mass

  Popescu, G., Park, K., Mir, M. & Bashir, R., Feb 21 2014, In: Lab on a chip. 14, 4, p. 646-652 7 p.

  Research output: Contribution to journal › Review article › peer-review

  • Cells
  • Imaging techniques
  • Technology
  • Sensors
  • Medicine

• Neuromuscular actuation of biohybrid motile bots

  Aydin, O., Zhang, X., Nuethong, S., Pagan-Diaz, G. J., Bashir, R., Gazzola, M. & Saif, M. T. A., Oct 1 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 40, p. 19841-19847 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Muscles
  • Locomotion
  • Motor Neurons
  • Optogenetics
  • Myoblasts

• Nanopore sensors for nucleic acid analysis

  Venkatesan, B. M. & Bashir, R., Oct 2010, In: Nature Nanotechnology. 6, 10, p. 615-624 10 p.

  Research output: Contribution to journal › Review article › peer-review

  • Nanopores
  • Nucleic acids
  • nucleic acids
  • DNA
  • Nucleic Acids

• Nanopore sensors for DNA analysis

  Solovyeva, V., Venkatesan, B. M., Shim, J., Banerjee, S., Rivera, J. & Bashir, R., Jul 23 2012, Micro- and Nanotechnology Sensors, Systems, and Applications IV. 83730O. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8373).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nanopore
  • Nanopores
  • Sensor
  • DNA
  • deoxyribonucleic acid

• Nanopore-based assay for detection of methylation in double-stranded DNA fragments

  Shim, J., Kim, Y., Humphreys, G. I., Nardulli, A. M., Kosari, F., Vasmatzis, G., Taylor, W. R., Ahlquist, D. A., Myong, S. & Bashir, R., Jan 27 2015, In: ACS Nano. 9, 1, p. 290-300 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Methylation
  • methylation
  • Nanopores
  • Assays
  • DNA

• Nano/micro and spectroscopic approaches to food pathogen detection

  Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In: Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

  Research output: Contribution to journal › Review article › peer-review

  • Pathogens
  • Phage display
  • Light scattering
  • Raman spectroscopy
  • Fourier transform infrared spectroscopy

• Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

  Hassan, U., Zhu, R. & Bashir, R., Apr 21 2018, In: Lab on a chip. 18, 8, p. 1231-1240 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Biosensing Techniques
  • Biosensors
  • Sepsis
  • Multivariate Analysis
  • Systemic Inflammatory Response Syndrome

• Multi-material bio-fabrication of hydrogel cantilevers and actuators with stereolithography

  Chan, V., Jeong, J. H., Bajaj, P., Collens, M., Saif, T., Kong, H. & Bashir, R., Jan 7 2012, In: Lab on a chip. 12, 1, p. 88-98 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Hydrogels
  • poly(ethylene glycol)diacrylate
  • Polyethylene glycols
  • Polyethylene Glycol Dimethacrylate Hydrogel

• Multi-cellular engineered living systems: Building a community around responsible research on emergence

  Sample, M., Boulicault, M., Allen, C., Bashir, R., Hyun, I., Levis, M., Lowenthal, C., Mertz, D., Montserrat, N., Palmer, M. J., Saha, K. & Zartman, J., Jul 10 2019, In: Biofabrication. 11, 4, 043001.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Seizing
  • Civil Rights
  • Organoids
  • Technology
  • Social Responsibility

• Monolayer MoS ₂ Nanoribbon Transistors Fabricated by Scanning Probe Lithography

  Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., Van Der Zande, A. M. & King, W. P., Mar 13 2019, In: Nano letters. 19, 3, p. 2092-2098 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanoribbons
  • Carbon Nanotubes
  • Monolayers
  • Lithography
  • Transistors

• Modeling and Analysis of Intercalant Effects on Circular DNA Conformation

  Krueger, E., Shim, J., Fathizadeh, A., Chang, A. N., Subei, B., Yocham, K. M., Davis, P. H., Graugnard, E., Khalili-Araghi, F., Bashir, R., Estrada, D. & Fologea, D., Sep 27 2016, In: ACS Nano. 10, 9, p. 8910-8917 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Circular DNA
  • Conformations
  • DNA
  • deoxyribonucleic acid
  • Nanopores

• Mobile biosensing using the sensing capabilities of smartphone cameras

  Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., Ganguli, A., Lumetta, S. & Bashir, R., Jan 4 2018, 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; vol. 2018-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Smartphones
  • cameras
  • Image processing
  • Health
  • Cameras

• Micro-patterning of mammalian cells on suspended MEMS resonant sensors for long-term growth measurements

  Corbin, E. A., Dorvel, B. R., Millet, L. J., King, W. P. & Bashir, R., Apr 21 2014, In: Lab on a chip. 14, 8, p. 1401-1404 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Micro-Electrical-Mechanical Systems
  • Cells
  • MEMS
  • Sensors
  • Growth

• Micro-masonry of MEMS sensors and actuators

  Zhang, Y., Keum, H., Park, K., Bashir, R. & Kim, S., Apr 2014, In: Journal of Microelectromechanical Systems. 23, 2, p. 308-314 7 p., 6570758.

  Research output: Contribution to journal › Article › peer-review

  • MEMS
  • Actuators
  • Microfabrication
  • Sensors
  • Rapid thermal annealing

• Microfluidics and Nanotechnology for Detection of Global Infectious Diseases

  Damhorst, G. L., Murtagh, M., Rodriguez, W. R. & Bashir, R., Feb 1 2015, In: Proceedings of the IEEE. 103, 2, p. 150-160 11 p., 7067024.

  Research output: Contribution to journal › Review article › peer-review

  • Nanotechnology
  • Microfluidics
  • Viruses
  • Pathogens
  • Industry

• Microfluidic multifunctional probe array dielectrophoretic force spectroscopy with wide loading rates

  Park, I. S., Eom, K., Son, J., Chang, W. J., Park, K., Kwon, T., Yoon, D. S., Bashir, R. & Lee, S. W., Oct 23 2012, In: ACS Nano. 6, 10, p. 8665-8673 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Molecular interactions
  • loading rate
  • Spectroscopy
  • Microfluidics
  • Molecular mechanics

• Microfluidic differential immunocapture biochip for specific leukocyte counting

  Hassan, U., Watkins, N. N., Reddy, B., Damhorst, G. & Bashir, R., Apr 1 2016, In: Nature Protocols. 11, 4, p. 714-726 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Biochips
  • Biosensors
  • Microfluidics
  • Leukocytes
  • Biosensing Techniques

• Microcantilevers track single-cell mass

  Bashir, R., Nov 8 2016, In: Nature Biotechnology. 34, 11, p. 1125-11260 10136 p.

  Research output: Contribution to journal › Short survey › peer-review

• Mechanical communication between cardiac cell leads to synchrony in beating

  Tang, X., Bajaj, P., Bashir, R. & Saif, T., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 333-334 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Elastic moduli
  • Stiffness
  • Communication

• Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

  Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In: Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Shape optimization
  • Muscle
  • Tissue
  • Skeletal Muscle
  • Muscles

• Measuring physical properties of neuronal and glial cells with resonant microsensors

  Corbin, E. A., Millet, L. J., Keller, K. R., King, W. P. & Bashir, R., May 20 2014, In: Analytical chemistry. 86, 10, p. 4864-4872 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Neuroglia
  • Microsensors
  • Physical properties
  • Sensors
  • Cells