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2019

Conjugated Barcoded Particles for Multiplexed Biomarker Quantification with a Microfluidic Biochip

Prakash, S., Nagarajan, M., Doyle, P., Bashir, R. & Hassan, U., Nov 2019, 2019 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2019. Institute of Electrical and Electronics Engineers Inc., p. 139-142 4 p. 8962846. (2019 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biochips
Microfluidics
biomarkers
Biomarkers
quantification

Engineering geometrical 3-dimensional untethered in vitro neural tissue mimic

Pagan-Diaz, G. J., Ramos-Cruz, K. P., Sam, R., Kandel, M. E., Aydin, O., Saif, T. M. A., Popescu, G. & Bashir, R., Dec 17 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 51, p. 25932-25940 9 p.

Research output: Contribution to journalArticle

Biomedical Research
Therapeutic Human Experimentation
Robotics
Drug Discovery
Embryonic Stem Cells

Localized Dielectric Loss Heating in Dielectrophoresis Devices

Kwak, T. J., Hossen, I., Bashir, R., Chang, W. J. & Lee, C. H., Dec 1 2019, In : Scientific reports. 9, 1, 18977.

Research output: Contribution to journalArticle

Open Access
Heating
Equipment and Supplies
Temperature
Electrodes
Hot Temperature

Long-Term Cryopreservation and Revival of Tissue-Engineered Skeletal Muscle

Grant, L., Raman, R., Cvetkovic, C., Ferrall-Fairbanks, M. C., Pagan-Diaz, G. J., Hadley, P., Ko, E., Platt, M. O. & Bashir, R., Jul 1 2019, In : Tissue Engineering - Part A. 25, 13-14, p. 1023-1036 14 p.

Research output: Contribution to journalArticle

Cryopreservation
Muscle
Skeletal Muscle
Tissue
Freezing

Matrix Topography Regulates Synaptic Transmission at the Neuromuscular Junction

Ko, E., Yu, S. J., Pagan-Diaz, G. J., Mahmassani, Z., Boppart, M. D., Im, S. G., Bashir, R. & Kong, H., Mar 20 2019, In : Advanced Science. 6, 6, 1801521.

Research output: Contribution to journalArticle

Neuromuscular Junction
Skeletal Muscle Fibers
Synaptic Transmission
Topography
topography

Monolayer MoS 2 Nanoribbon Transistors Fabricated by Scanning Probe Lithography

Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., Van Der Zande, A. M. & King, W. P., Mar 13 2019, In : Nano letters. 19, 3, p. 2092-2098 7 p.

Research output: Contribution to journalArticle

Nanoribbons
Carbon Nanotubes
Lithography
Monolayers
Transistors

Multi-cellular engineered living systems: Building a community around responsible research on emergence

Sample, M., Boulicault, M., Allen, C., Bashir, R., Hyun, I., Levis, M., Lowenthal, C., Mertz, D., Montserrat, N., Palmer, M. J., Saha, K. & Zartman, J., Jul 10 2019, In : Biofabrication. 11, 4, 043001.

Research output: Contribution to journalReview article

Open Access
Research
Seizing
Organoids
Technology
Civil Rights

Neuromuscular actuation of biohybrid motile bots

Aydin, O., Zhang, X., Nuethong, S., Pagan-Diaz, G. J., Bashir, R., Gazzola, M. & Saif, M. T. A., Oct 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 40, p. 19841-19847 7 p.

Research output: Contribution to journalArticle

Open Access
Muscles
Motor Neurons
Locomotion
Optogenetics
Neural Stem Cells

Publisher Correction: Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis (Scientific Reports, (2017), 7, 1, (10800), 10.1038/s41598-017-09766-1)

Taneja, I., Reddy, B., Damhorst, G., Zhao, S. D., Hassan, U., Price, Z., Jensen, T., Ghonge, T., Patel, M., Wachspress, S., Winter, J., Rappleye, M., Smith, G., Healey, R., Ajmal, M., Khan, M., Patel, J., Rawal, H., Sarwar, R., Soni, S. & 6 others, Anwaruddin, S., Davis, B., Kumar, J., White, K., Bashir, R. & Zhu, R., Dec 1 2019, In : Scientific reports. 9, 1, 17419.

Research output: Contribution to journalComment/debate

Open Access
Sepsis
Biomarkers

Smartphone-imaged microfluidic biochip for measuring CD64 expression from whole blood

Ghonge, T., Ceylan Koydemir, H., Valera, E., Berger, J., Garcia, C., Nawar, N., Tiao, J., Damhorst, G. L., Ganguli, A., Hassan, U., Ozcan, A. & Bashir, R., Jul 7 2019, In : Analyst. 144, 13, p. 3925-3935 11 p.

Research output: Contribution to journalArticle

Biochips
Microfluidics
Flow cytometry
Smartphones
flow cytometry
2018

3D printing for preoperative planning and surgical training: a review

Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J., Kesavadas, T. & Bashir, R., Sep 1 2018, In : Biomedical microdevices. 20, 3, 65.

Research output: Contribution to journalReview article

Printing
Audiovisual Aids
Planning
Diagnostic Imaging
Human Body

A microfluidic biochip platform for electrical quantification of proteins

Valera, E., Berger, J., Hassan, U., Ghonge, T., Liu, J., Rappleye, M., Winter, J., Abboud, D., Haidry, Z., Healey, R., Hung, N. T., Leung, N., Mansury, N., Hasnain, A., Lannon, C., Price, Z., White, K. & Bashir, R., Jan 1 2018, In : Lab on a chip. 18, 10, p. 1461-1470 10 p.

Research output: Contribution to journalArticle

Biochips
Microfluidics
Biomarkers
Sepsis
Point-of-Care Systems

Biodegradable Monocrystalline Silicon Photovoltaic Microcells as Power Supplies for Transient Biomedical Implants

Lu, L., Yang, Z., Meacham, K., Cvetkovic, C., Corbin, E. A., Vázquez-Guardado, A., Xue, M., Yin, L., Boroumand, J., Pakeltis, G., Sang, T., Yu, K. J., Chanda, D., Bashir, R., Gereau, R. W., Sheng, X. & Rogers, J. A., Jun 5 2018, In : Advanced Energy Materials. 8, 16, 1703035.

Research output: Contribution to journalArticle

Monocrystalline silicon
Oils and fats
Skin
Fats
Tissue

Correction to: Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines (Advanced Functional Materials, (2018), 28, 23, (1801145), 10.1002/adfm.201801145)

Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Aug 15 2018, In : Advanced Functional Materials. 28, 33, 1804580.

Research output: Contribution to journalComment/debate

walking machines
Functional materials
lists
Fabrication
fabrication

Detecting sepsis by observing neutrophil motility

Hassan, U., Valera, E. & Bashir, R., Apr 1 2018, In : Nature biomedical engineering. 2, 4, p. 197-198 2 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Cytological Techniques
Microfluidic Analytical Techniques
Sepsis
Neutrophils

Mobile biosensing using the sensing capabilities of smartphone cameras

Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., Ganguli, A., Lumetta, S. & Bashir, R., Jan 4 2018, 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Smartphones
Image processing
Cameras
cameras
Health

Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

Hassan, U., Zhu, R. & Bashir, R., Jan 1 2018, In : Lab on a chip. 18, 8, p. 1231-1240 10 p.

Research output: Contribution to journalArticle

Biosensing Techniques
Biosensors
Sepsis
Multivariate Analysis
Systemic Inflammatory Response Syndrome

Pixelated spatial gene expression analysis from tissue

Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In : Nature communications. 9, 1, 202.

Research output: Contribution to journalArticle

gene expression
Gene expression
Tissue
Gene Expression
ribonucleic acids

Point-of-care sensors for the management of sepsis

Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In : Nature biomedical engineering. 2, 9, p. 640-648 9 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Sepsis
Health
Sensors
Infection

Robust label-free microRNA detection using one million ISFET array

Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In : Biomedical microdevices. 20, 2, 1 p.

Research output: Contribution to journalArticle

Ion sensitive field effect transistors
Nucleic acids
MicroRNAs
Nucleic Acids
Labels

Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines

Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In : Advanced Functional Materials. 28, 23, 1801145.

Research output: Contribution to journalArticle

walking machines
Scaffolds
Robotics
Actuators
Tissue
2017

3D Printed Stem-Cell-Laden, Microchanneled Hydrogel Patch for the Enhanced Release of Cell-Secreting Factors and Treatment of Myocardial Infarctions

Melhem, M. R., Park, J., Knapp, L., Reinkensmeyer, L., Cvetkovic, C., Flewellyn, J., Lee, M. K., Jensen, T. W., Bashir, R., Kong, H. & Schook, L. B., Sep 11 2017, In : ACS Biomaterials Science and Engineering. 3, 9, p. 1980-1987 8 p.

Research output: Contribution to journalArticle

Hydrogel
Stem cells
Hydrogels
Microchannels
Gels

A modular approach to the design, fabrication, and characterization of muscle-powered biological machines

Raman, R., Cvetkovic, C. & Bashir, R., Mar 1 2017, In : Nature Protocols. 12, 3, p. 519-533 15 p.

Research output: Contribution to journalArticle

Skeleton
Muscle
Actuators
Fabrication
Muscles

A point-of-care microfluidic biochip for quantification of CD64 expression from whole blood for sepsis stratification

Hassan, U., Ghonge, T., Reddy, B., Patel, M., Rappleye, M., Taneja, I., Tanna, A., Healey, R., Manusry, N., Price, Z., Jensen, T., Berger, J., Hasnain, A., Flaugher, E., Liu, S., Davis, B., Kumar, J., White, K. & Bashir, R., Jul 3 2017, In : Nature communications. 8, 15949.

Research output: Contribution to journalArticle

Point-of-Care Systems
Biochips
leukocytes
Microfluidics
stratification

Biohybrid actuators for robotics: A review of devices actuated by living cells

Ricotti, L., Trimmer, B., Feinberg, A. W., Raman, R., Parker, K. K., Bashir, R., Sitti, M., Martel, S., Dario, P. & Menciassi, A., Nov 22 2017, In : Science Robotics. 2, 12, eaaq0495.

Research output: Contribution to journalReview article

Robotics
Actuator
Actuators
Cells
Molecular Motor

Biomimicry, Biofabrication, and Biohybrid Systems: The Emergence and Evolution of Biological Design

Raman, R. & Bashir, R., Oct 25 2017, In : Advanced Healthcare Materials. 6, 20, 1700496.

Research output: Contribution to journalArticle

Biological Evolution
Curriculum
History
Curricula
Systems analysis

Characterization of a 1024 × 1024 DG-BioFET platform

Duarte-Guevara, C., Swaminathan, V., Reddy, B., Wen, C. H., Huang, Y. J., Huang, J. C., Liu, Y. S. & Bashir, R., Jan 1 2017, In : Sensors and Actuators, B: Chemical. 250, p. 100-110 11 p.

Research output: Contribution to journalArticle

Field effect transistors
platforms
Amplification
field effect transistors
Drain current

Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis

Taneja, I., Reddy, B., Damhorst, G., Dave Zhao, S., Hassan, U., Price, Z., Jensen, T., Ghonge, T., Patel, M., Wachspress, S., Winter, J., Rappleye, M., Smith, G., Healey, R., Ajmal, M., Khan, M., Patel, J., Rawal, H., Sarwar, R., Soni, S. & 6 others, Anwaruddin, S., Davis, B., Kumar, J., White, K., Bashir, R. & Zhu, R., Dec 1 2017, In : Scientific reports. 7, 1, 10800.

Research output: Contribution to journalArticle

Electronic Health Records
Sepsis
Biomarkers
Area Under Curve
Interleukin 1 Receptor Antagonist Protein

Damage, Healing, and Remodeling in Optogenetic Skeletal Muscle Bioactuators

Raman, R., Grant, L., Seo, Y., Cvetkovic, C., Gapinske, M., Palasz, A., Dabbous, H., Kong, H., Pinera, P. P. & Bashir, R., Jun 21 2017, In : Advanced Healthcare Materials. 6, 12, 1700030.

Research output: Contribution to journalArticle

Optogenetics
Muscle
Skeletal Muscle
Technology
Psychological Adaptation
Curricula
Education
Teaching
Students
Bioengineering

Detection of methylation on dsDNA using nanopores in a MoS2 membrane

Shim, J., Banerjee, S., Qiu, H., Smithe, K. K. H., Estrada, D., Bello, J., Pop, E., Schulten, K. & Bashir, R., Oct 31 2017, In : Nanoscale. 9, 39, p. 14836-14845 10 p.

Research output: Contribution to journalArticle

Methylation
Nanopores
Membranes
Cytosine Nucleotides
DNA

Evidence of differential mass change rates between human breast cancer cell lines in culture

Corbin, E. A., Adeniba, O. O., Cangellaris, O. V., King, W. P. & Bashir, R., Mar 1 2017, In : Biomedical microdevices. 19, 1, 10.

Research output: Contribution to journalArticle

Cell culture
Cells
Breast Neoplasms
Cell Line
Growth

Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya, and Dengue at point-of-care

Ganguli, A., Ornob, A., Yu, H., Damhorst, G. L., Chen, W., Sun, F., Bhuiya, A., Cunningham, B. T. & Bashir, R., Dec 1 2017, In : Biomedical microdevices. 19, 4, 73.

Research output: Contribution to journalArticle

Point-of-Care Systems
Dengue
Smartphones
Blood
Hand

Integrated cantilever-based biosensors for the detection of chemical and biological entities

Corbin, E. A., YekrangSafakar, A., Adeniba, O., Gupta, A., Park, K. & Bashir, R., Jan 1 2017, Nanotechnology in Biology and Medicine: Methods, Devices, and Applications, Second Edition. CRC Press, p. 469-529 61 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biosensing Techniques
Biosensors
Sensors
Vacuum
Air

Investigating the Life Expectancy and Proteolytic Degradation of Engineered Skeletal Muscle Biological Machines

Cvetkovic, C., Ferrall-Fairbanks, M. C., Ko, E., Grant, L., Kong, H., Platt, M. O. & Bashir, R., Dec 1 2017, In : Scientific reports. 7, 1, 3775.

Research output: Contribution to journalArticle

Life Expectancy
Skeletal Muscle
Peptide Hydrolases
Tissue Engineering
Matrix Metalloproteinases

Mobile Platform for Multiplexed Detection and Differentiation of Disease-Specific Nucleic Acid Sequences, Using Microfluidic Loop-Mediated Isothermal Amplification and Smartphone Detection

Chen, W., Yu, H., Sun, F., Ornob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Nov 7 2017, In : Analytical chemistry. 89, 21, p. 11219-11226 8 p.

Research output: Contribution to journalArticle

Nucleic acid sequences
Smartphones
Pathogens
Microfluidics
Amplification

Multiplexed detection of infectious diseases with microfluidic loop-mediated isothermal amplification and a smartphone

Sun, F., Chen, W., Yu, H., Omob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Dec 19 2017, 2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017. Institute of Electrical and Electronics Engineers Inc., p. 241-244 4 p. (2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017; vol. 2017-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Point-of-Care Systems
Microfluidics
pathogens
Smartphones
Pathogens
2016

3D printing enables separation of orthogonal functions within a hydrogel particle

Raman, R., Clay, N. E., Sen, S., Melhem, M., Qin, E., Kong, H. & Bashir, R., Jan 1 2016, In : Biomedical microdevices. 18, 3, 49.

Research output: Contribution to journalArticle

Orthogonal functions
Hydrogel
Bovine Serum Albumin
Hydrogels
Particles (particulate matter)

Biaxial Dielectrophoresis Force Spectroscopy: A Stoichiometric Approach for Examining Intermolecular Weak Binding Interactions

Park, I. S., Kwak, T. J., Lee, G., Son, M., Choi, J. W., Choi, S., Nam, K., Lee, S. Y., Chang, W. J., Eom, K., Yoon, D. S., Lee, S., Bashir, R. & Lee, S. W., Apr 26 2016, In : ACS Nano. 10, 4, p. 4011-4019 9 p.

Research output: Contribution to journalArticle

Electrophoresis
Spectroscopy
loading rate
pulling
spectroscopy

Design and integration of a problem-based biofabrication course into an undergraduate biomedical engineering curriculum

Raman, R., Mitchell, M., Perez-Pinera, P., Bashir, R. & DeStefano, L., Sep 21 2016, In : Journal of Biological Engineering. 10, 1, 10.

Research output: Contribution to journalArticle

Biomedical Engineering
Biomedical engineering
Curriculum
Curricula
Students

Detection of silver ions using dielectrophoretic tweezers-based force spectroscopy

Choi, S., Lee, G., Park, I. S., Son, M., Kim, W., Lee, H., Lee, S. Y., Na, S., Yoon, D. S., Bashir, R., Park, J. & Lee, S. W., Jan 1 2016, In : Analytical chemistry. 88, 22, p. 10867-10875 9 p.

Research output: Contribution to journalArticle

Polynucleotides
Silver
Spectroscopy
Ions
Heavy Metals

Direct characterization of hydrodynamic loading on a microelectromechanical systems microstructure

Mehrnezhad, A., Bashir, R. & Park, K., Mar 14 2016, In : Applied Physics Letters. 108, 11, 114101.

Research output: Contribution to journalArticle

microelectromechanical systems
hydrodynamics
microstructure
viscous fluids
resonators

Droplet-based biosensing for lab-on-a-chip, open microfluidics platforms

Dak, P., Ebrahimi, A., Swaminathan, V., Duarte-Guevara, C., Bashir, R. & Alam, M. A., Jan 1 2016, In : Biosensors. 6, 2, 14.

Research output: Contribution to journalReview article

Lab-on-a-chip
Microfluidics
Biosensing Techniques
Biosensors
Costs and Cost Analysis

Dynamic mechanical measurement of the viscoelasticity of single adherent cells

Corbin, E. A., Adeniba, O. O., Ewoldt, R. H. & Bashir, R., Feb 29 2016, In : Applied Physics Letters. 108, 9, 093701.

Research output: Contribution to journalArticle

mechanical measurement
viscoelasticity
cells
sensors
microelectromechanical systems

Electrical Chips for Biological Point-of-Care Detection

Reddy, B., Salm, E. & Bashir, R., Jul 11 2016, In : Annual Review of Biomedical Engineering. 18, p. 329-355 27 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Biochips
Lab-on-a-chip
Multiplexing
Health care

High-Resolution Projection Microstereolithography for Patterning of Neovasculature

Raman, R., Bhaduri, B., Mir, M., Shkumatov, A., Lee, M. K., Popescu, G., Kong, H. & Bashir, R., Mar 9 2016, In : Advanced Healthcare Materials. 5, 5, p. 610-619 10 p.

Research output: Contribution to journalArticle

Stereolithography
Tissue engineering
Assays
Tissue
Fabrication

HIV-1 IIIB capture from whole blood on magnetic microparticles

Damhorst, G. L., Kooiman, J. M. & Bashir, R., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 5785-5788 4 p. 7592042. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Antibodies
HIV-1
Blood
HIV
Proteins

Magnetophoretic-based microfluidic device for DNA Concentration

Shim, S., Shim, J., Taylor, W. R., Kosari, F., Vasmatzis, G., Ahlquist, D. A. & Bashir, R., Apr 1 2016, In : Biomedical microdevices. 18, 2, p. 1-8 8 p., 28.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
DNA
Nanofluidics
Nucleic acids

Microcantilevers track single-cell mass

Bashir, R., Nov 8 2016, In : Nature Biotechnology. 34, 11, p. 1125-11260 10136 p.

Research output: Contribution to journalShort survey

Microscopic examination
Animals

Microfluidic differential immunocapture biochip for specific leukocyte counting

Hassan, U., Watkins, N. N., Reddy, B., Damhorst, G. & Bashir, R., Apr 1 2016, In : Nature Protocols. 11, 4, p. 714-726 13 p.

Research output: Contribution to journalArticle

Biochips
Microfluidics
Biosensors
Leukocytes
Biosensing Techniques