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• 2021

  Multiple Sequence Alignment for Large Heterogeneous Datasets Using SATé, PASTA, and UPP

  Warnow, T. & Mirarab, S., 2021, Methods in Molecular Biology. Humana Press Inc., p. 99-119 21 p. (Methods in Molecular Biology; vol. 2231).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Sequence Alignment
  • Datasets
  • Software

• Multi-Scale Microfluidics for Transport in Shale Fabric

  Ling, B., Khan, H. J., Druhan, J. L. & Battiato, I., 2021, In: Energies. 14, 1

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Microfluidics
  • Shale
  • Solute transport
  • Best Practice
  • Solute Transport

• Multi-text multi-modal reading processes and comprehension

  Cromley, J. G., Kunze, A. J. & Dane, A. P., Feb 2021, In: Learning and Instruction. 71, 101413.

  Research output: Contribution to journal › Article › peer-review

  • Reading
  • comprehension
  • Confusion
  • Learning
  • Students

• Musical Training and Brain Volume in Older Adults

  Chaddock-Heyman, L., Loui, P., Weng, T. B., Weisshappel, R., McAuley, E. & Kramer, A. F., 2021, In: Brain Sciences. 11, 1

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Practice (Psychology)
  • Music
  • Brain
  • Executive Function
  • Gyrus Cinguli

• Mutual fund flows and fluctuations in credit and business cycles

  Ben-Rephael, A., Choi, J. & Goldstein, I., Jan 2021, In: Journal of Financial Economics. 139, 1, p. 84-108 25 p.

  Research output: Contribution to journal › Article › peer-review

  • High Yield Bonds
  • Mutual Fund Flows
  • Business Cycles
  • Credit Cycle
  • Fluctuations

• No buzz for bees: Media coverage of pollinator decline

  Althaus, S. L., Berenbaum, M. R., Jordan, J. & Shalmon, D. A., Jan 12 2021, In: Proceedings of the National Academy of Sciences. 118, 2, p. e2002552117

  Research output: Contribution to journal › Article › peer-review

  • coverage
  • climate change
  • news
  • newspaper
  • news report

• Nonlinear elasticity and damping govern ultrafast dynamics in click beetles

  Bolmin, O., Socha, J. J., Alleyne, M., Dunn, A. C., Fezzaa, K. & Wissa, A. A., Feb 2 2021, In: Proceedings of the National Academy of Sciences. 118, 5

  Research output: Contribution to journal › Article › peer-review

  • beetles
  • damping
  • elastic properties
  • latches
  • animals

• Older Cannabis Users Are Not All Alike: Lifespan Cannabis Use Patterns

  Arora, K., Qualls, S. H., Bobitt, J., Milavetz, G. & Kaskie, B., Jan 2021, In: Journal of Applied Gerontology. 40, 1, p. 87-94 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Cannabis
  • Longevity
  • Sociological Factors
  • Health
  • Health Personnel

• On 2-defective DP-colorings of sparse graphs

  Kostochka, A. & Xu, J., Jan 2021, In: European Journal of Combinatorics. 91, 103217.

  Research output: Contribution to journal › Article › peer-review

  • Sparse Graphs
  • Colouring
  • List Coloring
  • Critical Graph
  • Color

• Online generic diagnostic reservoir operation tools

  Zhao, Q., Li, D. & Cai, X., Jan 2021, In: Environmental Modelling and Software. 135, 104918.

  Research output: Contribution to journal › Article › peer-review

  • Numerical models
  • world
  • data mining
  • development model
  • Data visualization

• On the fourth order Schrödinger equation in three dimensions: Dispersive estimates and zero energy resonances

  Erdoğan, M. B., Green, W. R. & Toprak, E., Jan 15 2021, In: Journal of Differential Equations. 271, p. 152-185 34 p.

  Research output: Contribution to journal › Article › peer-review

  • Dispersive Estimates
  • Fourth-order Equations
  • Three-dimension
  • Energy
  • Zero

• Opioid use at the transition to emerging adulthood: A latent class analysis of non-medical use of prescription opioids and heroin use

  Barton, A. W., Reinhart, C. A., Campbell, C. C., Smith, D. C. & Albarracin, D., Mar 2021, In: Addictive Behaviors. 114, 106757.

  Research output: Contribution to journal › Article › peer-review

  • Heroin
  • Latent Class Analysis
  • Opioid Analgesics
  • Prescriptions
  • Mental Health

• Optimization of two-stage pretreatment for maximizing ethanol production in 1.5G technology

  Juneja, A., Noordam, B., Pel, H., Basu, R., Appeldoorn, M. & Singh, V., Jan 2021, In: Bioresource Technology. 320, 124380.

  Research output: Contribution to journal › Article › peer-review

  • Cellulase
  • Ethanol
  • ethanol
  • maize
  • xylose-glucose

• Oxidative stress, NF-κB signaling, NLRP3 inflammasome, and caspase apoptotic pathways are activated in mammary gland of ketotic Holstein cows

  Sun, X., Tang, Y., Jiang, C., Luo, S., Jia, H., Xu, Q., Zhao, C., Liang, Y., Cao, Z., Shao, G., Loor, J. J. & Xu, C., Jan 2021, In: Journal of Dairy Science. 104, 1, p. 849-861 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • inflammasomes
  • caspases
  • Ketosis
  • Inflammasomes
  • Human Mammary Glands

• Paraben exposure alters cell cycle progression and survival of spontaneously immortalized secretory murine oviductal epithelial (MOE) cells

  Ziv-Gal, A., Berg, M. D. & Dean, M., Mar 2021, In: Reproductive Toxicology. 100, p. 7-16 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Parabens
  • Epithelial Cells
  • Cells
  • Cell Cycle
  • Cell Survival

• Parasitic begging calls of nestmate-evictor common cuckoos stimulate more parental provisions by red-winged blackbirds than calls of nest-sharing brown-headed cowbirds

  Li, D. & Hauber, M. E., Jan 2021, In: Behavioral Ecology and Sociobiology. 75, 1, 11.

  Research output: Contribution to journal › Article › peer-review

  • Cuculus canorus
  • Agelaius phoeniceus
  • Molothrus ater
  • nest
  • Cuculidae

• Parents’ Responses to Peer Victimization: Associations With Early Adolescent Coping and Peer Victimization

  Tu, K. M., Erath, S. A., Pettit, G. S. & Vandenberg, C., Jan 2021, In: Journal of Early Adolescence. 41, 1, p. 167-196 30 p.

  Research output: Contribution to journal › Article › peer-review

  • Crime Victims
  • victimization
  • coping
  • Parents
  • adolescent

• Partitioning ordered hypergraphs

  Füredi, Z., Jiang, T., Kostochka, A., Mubayi, D. & Verstraëte, J., Jan 2021, In: Journal of Combinatorial Theory. Series A. 177, 105300.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Partitioning
  • Hypergraph
  • Interval
  • Graph in graph theory
  • Vertex of a graph

• Peak growing season patterns and climate extremes-driven responses of gross primary production estimated by satellite and process based models over North America

  He, W., Ju, W., Jiang, F., Parazoo, N., Gentine, P., Wu, X., Zhang, C., Zhu, J., Viovy, N., Jain, A. K., Sitch, S. & Friedlingstein, P., Mar 15 2021, In: Agricultural and Forest Meteorology. 298-299, 108292.

  Research output: Contribution to journal › Article › peer-review

  • gross primary productivity
  • primary production
  • growing season
  • climate
  • North America

• Performance Analysis of Computer Vision with Machine Learning Algorithms on Raspberry Pi 3

  Worsley, K., Eddin, A. S., Xiong, J., Hwu, W. M. & El-Hadedy, M., 2021, Proceedings of the Future Technologies Conference, FTC 2020, Volume 1. Arai, K., Kapoor, S. & Bhatia, R. (eds.). Springer Science and Business Media Deutschland GmbH, p. 216-232 17 p. (Advances in Intelligent Systems and Computing; vol. 1288).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Computer vision
  • Learning algorithms
  • Machine learning
  • Industry

• Perinatal Anxiety Symptoms: Rates and Risk Factors in Mexican Women

  Juarez Padilla, J., Lara-Cinisomo, S., Navarrete, L. & Lara, M. A., 2021, In: International journal of environmental research and public health. 18, 1

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Anxiety
  • Pregnancy
  • Postpartum Period
  • Logistics
  • Mexico

• Phthalate exposures and one-year change in body mass index across the menopausal transition

  Haggerty, D. K., Flaws, J. A., Li, Z. & Strakovsky, R. S., Mar 2021, In: Environmental Research. 194, 110598.

  Research output: Contribution to journal › Article › peer-review

  • phthalic acid
  • phthalate
  • body mass
  • Body Mass Index
  • transition

• Phylogenomics of the North American Plecoptera

  South, E. J., Skinner, R. K., DeWalt, R. E., Kondratieff, B. C., Johnson, K. P., Davis, M. A., Lee, J. J. & Durfee, R. S., Jan 2021, In: Systematic Entomology. 46, 1, p. 287-305 19 p.

  Research output: Contribution to journal › Article › peer-review

  • Plecoptera
  • stonefly
  • family
  • Capniidae
  • Leuctridae

• Political Infrastructures, Infrastructures of Citizenship! Self-Installed Urban Services and the Incremental Acquisition of Rights by Nicaraguan Migrants in Costa Rica.

  Alvarado, N. A., 2021, (In preparation) In: International Journal of Urban and Regional Research.

  Research output: Contribution to journal › Article › peer-review

• PolyShard: Coded Sharding Achieves Linearly Scaling Efficiency and Security Simultaneously

  Li, S., Yu, M., Yang, C. S., Avestimehr, A. S., Kannan, S. & Viswanath, P., 2021, In: IEEE Transactions on Information Forensics and Security. 16, p. 249-261 13 p., 9141331.

  Research output: Contribution to journal › Article › peer-review

  • Blockchain
  • Scalability
  • Throughput
  • Communication

• Population-level impacts of natural and anthropogenic causes-of-death for Hawaiian monk seals in the main Hawaiian Islands

  Harting, A. L., Barbieri, M. M., Baker, J. D., Mercer, T. A., Johanos, T. C., Robinson, S. J., Littnan, C. L., Colegrove, K. M. & Rotstein, D. S., Jan 2021, In: Marine Mammal Science. 37, 1, p. 235-250 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Monachus schauinslandi
  • cause of death
  • Hawaii
  • death
  • disease cause

• Positive, Negative, and Disorganized Schizotypy Predict Differential Patterns of Interview-Rated Schizophrenia-Spectrum Symptoms and Impairment

  Kemp, K. C., Bathery, A. J., Barrantes-Vidal, N. & Kwapil, T. R., Jan 2021, In: Assessment. 28, 1, p. 141-152 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Schizophrenia
  • Interviews
  • Paranoid Personality Disorder
  • Personality Disorders
  • Young Adult

• Predicting transformations during reactive flash sintering in CuO and Mn₂O₃

  Murray, S. E., Lin, Y. Y., Sulekar, S. S., Gebre, M. S., Perry, N. H. & Shoemaker, D. P., Jan 2021, In: Journal of the American Ceramic Society. 104, 1, p. 76-85 10 p.

  Research output: Contribution to journal › Article › peer-review

  • sintering
  • Sintering
  • heating
  • Temperature
  • temperature

• Preliminary design of control rods in the single-fluid double-zone thorium molten salt reactor (SD-TMSR)

  Ashraf, O., Rykhlevskii, A., Tikhomirov, G. V. & Huff, K. D., Mar 2021, In: Annals of Nuclear Energy. 152, 108035.

  Research output: Contribution to journal › Article › peer-review

  • Molten salt reactor
  • Thorium
  • Control rods
  • Fluids
  • Fueling

• Preserve a Voucher Specimen! The Critical Need for Integrating Natural History Collections in Infectious Disease Studies

  Thompson, C. W., Phelps, K. L., Allard, M. W., Cook, J. A., Dunnum, J. L., Ferguson, A. W., Gelang, M., Khan, F. A. A., Paul, D. L., Reeder, D. M., Simmons, N. B., Vanhove, M. P. M., Webala, P. W., Weksler, M., Kilpatrick, C. W. & Prasad, V. R. (ed.), Jan 2021, In: mBio. 12, 1

  Research output: Contribution to journal › Article › peer-review

  • Coronavirus
  • Natural History
  • Biodiversity
  • Communicable Diseases
  • Pandemics

• Protein Digests and Pure Peptides from Chia Seed Prevented Adipogenesis and Inflammation by Inhibiting PPARγ and NF-κB Pathways in 3T3L-1 Adipocytes

  Grancieri, M., Martino, H. S. D. & Gonzalez de Mejia, E., 2021, In: Nutrients. 13, 1

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • adipogenesis
  • Adipogenesis
  • Peroxisome Proliferator-Activated Receptors
  • adipocytes
  • Seeds

• Pulmonary Mycosis Drives Forkhead Box Protein A2 Degradation and Mucus Hypersecretion through Activation of the Spleen Tyrosine Kinase–Epidermal Growth Factor Receptor–AKT/Extracellular Signal-Regulated Kinase 1/2 Signaling

  Choi, W., Yang, A. X., Sieve, A., Kuo, S. H., Mudalagiriyappa, S., Vieson, M., Maddox, C. W., Nanjappa, S. G. & Lau, G. W., Jan 2021, In: American Journal of Pathology. 191, 1, p. 108-130 23 p.

  Research output: Contribution to journal › Article › peer-review

  • Forkhead Transcription Factors
  • Mitogen-Activated Protein Kinase 3
  • Mitogen-Activated Protein Kinase 1
  • Mucus
  • varespladib methyl

• Quantification of Railway Ballast Degradation by Abrasion Testing and Computer-Aided Morphology Analysis

  Bian, X., Shi, K., Li, W., Luo, X., Tutumluer, E. & Chen, Y., Jan 1 2021, In: Journal of Materials in Civil Engineering. 33, 1, 0003519.

  Research output: Contribution to journal › Article › peer-review

  • Abrasion
  • Degradation
  • Testing
  • Railroad tracks
  • Particle size analysis

• Quasi-static numerical modeling of miniature RF circuits based on lumped equivalent circuits

  Li, H., Jin, J. M., Jachowski, D., Silver, R. & Hammond, R., Jan 1 2021, In: International Journal of Numerical Modelling: Electronic Networks, Devices and Fields. 34, 1, e2795.

  Research output: Contribution to journal › Article › peer-review

  • Equivalent Circuit
  • Numerical Modeling
  • Equivalent circuits
  • Inductance
  • Capacitance

• Races with imaginary parts of zeros of the Riemann zeta function and Dirichlet L-functions

  Liu, D. & Zaharescu, A., Feb 1 2021, In: Journal of Mathematical Analysis and Applications. 494, 1, 124591.

  Research output: Contribution to journal › Article › peer-review

  • Dirichlet L-function
  • Test function
  • Riemann zeta function
  • Zero

• Rational Inattention in the Infield

  Howard, G., 2021, (Accepted/In press) In: American Economic Journal: Microeconomics.

  Research output: Contribution to journal › Article › peer-review

  • Rational Inattention
  • Costs
  • Major League Baseball
  • Mixed Strategy
  • Strategic Interaction

• Recent advances in multisensory development

  Flom, R. & Hyde, D. C., Jan 2021, In: Journal of Experimental Child Psychology. 201, 104983.

  Research output: Contribution to journal › Editorial › peer-review

• RECO-DryGASCON: Re-configurable Lightweight DryGASCON Engine

  Herndon, R., El-Issa, R., Heer, D., Xiong, J., Hwu, W. M. & El-Hadedy, M., 2021, Proceedings of the Future Technologies Conference, FTC 2020, Volume 3. Arai, K., Kapoor, S. & Bhatia, R. (eds.). Springer Science and Business Media Deutschland GmbH, p. 703-721 19 p. (Advances in Intelligent Systems and Computing; vol. 1290).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Engines
  • Internet of things
  • Cryptography
  • Drones
  • Sonar

• Relationship Between Facial Recognition, Color Spaces, and Basic Image Manipulation

  Millan, G., Eddin, A. S., Xiong, J., Hwu, W. M. & El-Hadedy, M., 2021, Proceedings of the Future Technologies Conference, FTC 2020, Volume 3. Arai, K., Kapoor, S. & Bhatia, R. (eds.). Springer Science and Business Media Deutschland GmbH, p. 844-853 10 p. (Advances in Intelligent Systems and Computing; vol. 1290).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Color
  • Neural networks
  • Image recognition
  • Medical imaging
  • Autonomous vehicles

• Religiosity and Resilience: Cognitive Reappraisal and Coping Self-Efficacy Mediate the Link between Religious Coping and Well-Being

  Dolcos, F., Hohl, K., Hu, Y. & Dolcos, S., Jan 7 2021, (Accepted/In press) In: Journal of Religion and Health.

  Research output: Contribution to journal › Article › peer-review

  • Religious Coping
  • Coping Strategies
  • Self Efficacy
  • Self-efficacy
  • Resilience

• Renewable biohydrogen production from lignocellulosic biomass using fermentation and integration of systems with other energy generation technologies

  Bhatia, S. K., Jagtap, S. S., Bedekar, A. A., Bhatia, R. K., Rajendran, K., Pugazhendhi, A., Rao, C. V., Atabani, A. E., Kumar, G. & Yang, Y. H., Apr 15 2021, In: Science of the Total Environment. 765, 144429.

  Research output: Contribution to journal › Review article › peer-review

  • Fermentation
  • fermentation
  • Biomass
  • biomass
  • Substrates

• Reply to Yao et al.'s comment on “Origin of temporal changes of inner-core seismic waves”

  Yang, Y. & Song, X., Jan 1 2021, In: Earth and Planetary Science Letters. 553, 116639.

  Research output: Contribution to journal › Letter › peer-review

  • seismic waves
  • Seismic waves
  • inner core
  • seismic wave
  • Clocks

• Revisiting Evaluation of Multiple Sequence Alignment Methods

  Warnow, T., 2021, Methods in Molecular Biology. Humana Press Inc., p. 299-317 19 p. (Methods in Molecular Biology; vol. 2231).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Sequence Alignment
  • Benchmarking
  • Computational Biology

• Sex is associated with differences in gut microbial composition and function in hepatic encephalopathy

  Saboo, K., Shamsaddini, A., Iyer, M. V., Hu, C., Fagan, A., Gavis, E. A., White, M. B., Fuchs, M., Heuman, D. M., Sikaroodi, M., Iyer, R. K., Gillevet, P. M. & Bajaj, J. S., Jan 2021, In: Journal of Hepatology. 74, 1, p. 80-88 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Hepatic Encephalopathy
  • Fibrosis
  • Microbiota
  • Feminization
  • Lactulose

• Shitty Citizenships, Trashy Politics: Migrant Spaces, Racism, and Street Politics in Costa Rica.

  Alvarado, N. A., 2021, (In preparation) In: Urban Geography.

  Research output: Contribution to journal › Article › peer-review

• Shock-induced kinetics and cellular structures of liquid nitromethane detonation

  Nissen, E. J., Bhowmick, M. & Dlott, D. D., Mar 2021, In: Combustion and Flame. 225, p. 5-12 8 p.

  Research output: Contribution to journal › Article › peer-review

  • nitromethane
  • Detonation
  • shock fronts
  • detonation
  • Explosions

• Single-step, wash-free digital immunoassay for rapid quantitative analysis of serological antibody against SARS-CoV-2 by photonic resonator absorption microscopy

  Zhao, B., Che, C., Wang, W., Li, N. & Cunningham, B. T., Apr 1 2021, In: Talanta. 225, 122004.

  Research output: Contribution to journal › Article › peer-review

  • Photonics
  • Microscopic examination
  • Resonators
  • Chemical analysis
  • Immunoglobulin G

• Social experience calibrates neural sensitivity to social feedback during adolescence: A functional connectivity approach

  Rudolph, K. D., Davis, M. M., Skymba, H. V., Modi, H. H. & Telzer, E. H., Feb 2021, In: Developmental Cognitive Neuroscience. 47, 100903.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Parahippocampal Gyrus
  • Amygdala
  • Reward
  • Cognition
  • Brain

• Soil mass and grind size used for sample homogenization strongly affect permanganate-oxidizable carbon (POXC) values, with implications for its use as a national soil health indicator

  Pulleman, M., Wills, S., Creamer, R., Dick, R., Ferguson, R., Hooper, D., Williams, C. & Margenot, A. J., Feb 1 2021, In: Geoderma. 383, 114742.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • permanganates
  • homogenization
  • soil quality
  • health
  • carbon

• Solving Global Crises via Desktop Manufacturing

  Rindfleisch, A. & Kim, M. H., Jan 2021, In: Journal of Public Policy and Marketing. 40, 1, p. 111-112 2 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access