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  • Joseph Maria Kumar Irudayaraj
2016

A study of alterations in DNA epigenetic modifications (5mC and 5hmC) and gene expression influenced by simulated microgravity in human lymphoblastoid cells

Chowdhury, B., Seetharam, A., Wang, Z., Liu, Y., Lossie, A. C., Thimmapuram, J. & Irudayaraj, J., Jan 1 2016, In : PloS one. 11, 1, e0147514.

Research output: Contribution to journalArticle

CRISPR-dCas9 mediated TET1 targeting for selective DNA demethylation at BRCA1 promoter

Choudhury, S. R., Cui, Y., Lubecka, K., Stefanska, B. & Irudayaraj, J., Jan 1 2016, In : Oncotarget. 7, 29, p. 46545-46556 12 p.

Research output: Contribution to journalArticle

Epigenetic toxicity of trichloroethylene: A single-molecule perspective

Cui, Y., Choudhury, S. R. & Irudayaraj, J., Jan 1 2016, In : Toxicology Research. 5, 2, p. 641-650 10 p.

Research output: Contribution to journalArticle

Kinase phosphorylation monitoring with i-motif DNA cross-linked SERS probes

Ren, W., Damayanti, N. P., Wang, X. & Irudayaraj, J. M. K., Jan 7 2016, In : Chemical Communications. 52, 2, p. 410-413 4 p.

Research output: Contribution to journalArticle

Mitochondrial Dysfunction, Disruption of F-Actin Polymerization, and Transcriptomic Alterations in Zebrafish Larvae Exposed to Trichloroethylene

Wirbisky, S. E., Damayanti, N. P., Mahapatra, C. T., Sepúlveda, M. S., Irudayaraj, J. & Freeman, J. L., Feb 15 2016, In : Chemical Research in Toxicology. 29, 2, p. 169-179 11 p.

Research output: Contribution to journalArticle

Non-fluorescent quantification of single mRNA with transient absorption microscopy

Liu, J. & Irudayaraj, J. M. K., Dec 14 2016, In : Nanoscale. 8, 46, p. 19242-19248 7 p.

Research output: Contribution to journalArticle

Optical Clearing Delivers Ultrasensitive Hyperspectral Dark-Field Imaging for Single-Cell Evaluation

Cui, Y., Wang, X., Ren, W., Liu, J. & Irudayaraj, J., Mar 22 2016, In : ACS Nano. 10, 3, p. 3132-3143 12 p.

Research output: Contribution to journalArticle

Optogenetic regulation of site-specific subtelomeric DNA-methylation

Choudhury, S. R., Cui, Y., Narayanan, A., Gilley, D. P., Huda, N., Lo, C. L., Zhou, F. C., Yernool, D. & Irudayaraj, J., Jan 1 2016, In : Oncotarget. 7, 31, p. 50380-50391 12 p.

Research output: Contribution to journalArticle

Point-of-care test for cervical cancer in LMICs

Mohammed, S. I., Ren, W., Flowers, L., Rajwa, B., Chibwesha, C. J., Parham, G. P. & Irudayaraj, J. M. K., Jan 1 2016, In : Oncotarget. 7, 14, p. 18787-18797 11 p.

Research output: Contribution to journalArticle

Regulatory landscape and clinical implication of MBD3 in human malignant glioma

Cui, Y., Li, J., Weng, L., Wirbisky, S. E., Freeman, J. L., Liu, J., Liu, Q., Yuan, X. & Irudayaraj, J., Jan 1 2016, In : Oncotarget. 7, 49, p. 81698-81714 17 p.

Research output: Contribution to journalArticle

Superplastic Formation of Metal Nanostructure Arrays with Ultrafine Gaps

Hu, Y., Xuan, Y., Wang, X., Deng, B., Saei, M., Jin, S., Irudayaraj, J. & Cheng, G. J., Jan 1 2016, In : Advanced Materials. 28, 41, p. 9152-9162 11 p.

Research output: Contribution to journalArticle

Ultrasensitive detection of microbial cells using magnetic focus enhanced lateral flow sensors

Ren, W., Cho, I. H., Zhou, Z. & Irudayaraj, J., Jan 1 2016, In : Chemical Communications. 52, 27, p. 4930-4933 4 p.

Research output: Contribution to journalArticle

2017

A net fishing enrichment strategy for colorimetric detection of E. coli O157:H7

Ren, W., Liu, W. & Irudayaraj, J., Jan 1 2017, In : Sensors and Actuators, B: Chemical. 247, p. 923-929 7 p.

Research output: Contribution to journalArticle

An integrated microsystem with dielectrophoresis enrichment and impedance detection for detection of Escherichia coli

Wang, R., Xu, Y., Liu, H., Peng, J., Irudayaraj, J. & Cui, F., Jun 1 2017, In : Biomedical microdevices. 19, 2, 34.

Research output: Contribution to journalArticle

A reusable laser wrapped graphene-Ag array based SERS sensor for trace detection of genomic DNA methylation

Ouyang, L., Hu, Y., Zhu, L., Cheng, G. J. & Irudayaraj, J., Jun 15 2017, In : Biosensors and Bioelectronics. 92, p. 755-762 8 p.

Research output: Contribution to journalArticle

Basic studies on epigenetic carcinogenesis of low-dose exposure to 1-trichloromethyl-1,2,3,4-tetrahydro-β-carboline (TaClo) in vitro

Wang, R., Cui, Y., Xu, Y. & Irudayaraj, J., Feb 2017, In : PloS one. 12, 2, e0172243.

Research output: Contribution to journalArticle

Bimodal counterpropagating-responsive sensing material for the detection of histamine

Wu, Z., Xu, E., Jiao, A., Jin, Z. & Irudayaraj, J., Jan 1 2017, In : RSC Advances. 7, 71, p. 44933-44944 12 p.

Research output: Contribution to journalArticle

Comparative in vitro toxicity assessment of perfluorinated carboxylic acids

Mahapatra, C. T., Damayanti, N. P., Guffey, S. C., Serafin, J. S., Irudayaraj, J. M. K. & Sepúlveda, M. S., Jun 2017, In : Journal of Applied Toxicology. 37, 6, p. 699-708 10 p.

Research output: Contribution to journalArticle

Electron spin contrast of Purcell-enhanced nitrogen-vacancy ensembles in nanodiamonds

Bogdanov, S., Shalaginov, M. Y., Akimov, A., Lagutchev, A. S., Kapitanova, P., Liu, J., Woods, D., Ferrera, M., Belov, P., Irudayaraj, J., Boltasseva, A. & Shalaev, V. M., Jul 25 2017, In : Physical Review B. 96, 3, 035146.

Research output: Contribution to journalArticle

Epigenetic Editing of Ascl1 Gene in Neural Stem Cells by Optogenetics

Lo, C. L., Choudhury, S. R., Irudayaraj, J. & Zhou, F. C., Feb 9 2017, In : Scientific reports. 7, 42047.

Research output: Contribution to journalArticle

EZH2 modifies sunitinib resistance in renal cell carcinoma by kinome reprogramming

Adelaiye-Ogala, R., Budka, J., Damayanti, N. P., Arrington, J., Ferris, M., Hsu, C. C., Chintala, S., Orillion, A., Miles, K. M., Shen, L., Elbanna, M., Ciamporcero, E., Arisa, S., Pettazzoni, P., Draetta, G. F., Seshadri, M., Hancock, B., Radovich, M., Kota, J., Buck, M. & 9 others, Keilhack, H., McCarthy, B. P., Persohn, S. A., Territo, P. R., Zang, Y., Irudayaraj, J., Tao, W. A., Hollenhorst, P. & Pili, R., Dec 1 2017, In : Cancer Research. 77, 23, p. 6651-6666 16 p.

Research output: Contribution to journalArticle

Highly sensitive fluorescence sensing of zearalenone using a novel aptasensor based on upconverting nanoparticles

Wu, Z., Xu, E., Chughtai, M. F. J., Jin, Z. & Irudayaraj, J., Sep 1 2017, In : Food chemistry. 230, p. 673-680 8 p.

Research output: Contribution to journalArticle

Hypoxia re-programming oxygen nanobubbles sensitize human glioblastoma cells to temozolomide via methylation alterations

Bhandari, P., Lei, O. & Irudayaraj, J., Oct 2017, In : Journal of Bionanoscience. 11, 5, p. 337-345 9 p.

Research output: Contribution to journalArticle

In vivo biodetection using surface-enhanced raman spectroscopy

Lee, S., Kadam, U. S., Craig, A. P. & Irudayaraj, J., Jan 1 2017, Biosensors Based on Nanomaterials and Nanodevices. Li, J. & Wu, N. (eds.). CRC Press, p. 157-178 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Monitoring focal adhesion kinase phosphorylation dynamics in live cells

Damayanti, N. P., Buno, K., Narayanan, N., Voytik Harbin, S. L., Deng, M. & Irudayaraj, J. M. K., Aug 7 2017, In : Analyst. 142, 15, p. 2713-2716 4 p.

Research output: Contribution to journalArticle

Multiplex single-cell quantification of rare RNA transcripts from protoplasts in a model plant system

Kadam, U. S., Schulz, B. & Irudayaraj, J. M. K., Jun 2017, In : Plant Journal. 90, 6, p. 1187-1195 9 p.

Research output: Contribution to journalArticle

Optical microscopy and spectroscopy for epigenetic modifications in single living cells

Cui, Y. & Irudayaraj, J., Jan 1 2017, Methods in Pharmacology and Toxicology. Humana Press Inc., p. 135-154 20 p. (Methods in Pharmacology and Toxicology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oxygen nanobubbles revert hypoxia by methylation programming

Bhandari, P. N., Cui, Y., Elzey, B. D., Goergen, C. J., Long, C. M. & Irudayaraj, J., Dec 1 2017, In : Scientific reports. 7, 1, 9268.

Research output: Contribution to journalArticle

Oxygen Nanobubble Tracking by Light Scattering in Single Cells and Tissues

Bhandari, P., Wang, X. & Irudayaraj, J., Mar 28 2017, In : ACS Nano. 11, 3, p. 2682-2688 7 p.

Research output: Contribution to journalArticle

PLGA-PEG nano-delivery system for epigenetic therapy

Naz, A., Cui, Y., Collins, C. J., Thompson, D. H. & Irudayaraj, J., Jun 1 2017, In : Biomedicine and Pharmacotherapy. 90, p. 586-597 12 p.

Research output: Contribution to journalArticle

Prosperity to challenges: Recent approaches in SERS substrate fabrication

Ouyang, L., Ren, W., Zhu, L. & Irudayaraj, J., Mar 1 2017, In : Reviews in Analytical Chemistry. 36, 1

Research output: Contribution to journalArticle

Real-Time Multiplex Kinase Phosphorylation Sensors in Living Cells

Damayanti, N. P., Buno, K., Cui, Y., Voytik-Harbin, S. L., Pili, R., Freeman, J. & Irudayaraj, J. M. K., Aug 25 2017, In : ACS Sensors. 2, 8, p. 1225-1230 6 p.

Research output: Contribution to journalArticle

Single molecule Raman spectroscopic assay to detect transgene from GM plants

Kadam, U. S., Chavhan, R. L., Schulz, B. & Irudayaraj, J., Sep 1 2017, In : Analytical Biochemistry. 532, p. 60-63 4 p.

Research output: Contribution to journalArticle

Spin contrast of purcell-enhanced nitrogen-vacancy centers in diamonds

Bogdanov, S., Shalaginov, M. Y., Akimov, A. V., Lagutchev, A., Liu, J., Woods, D., Ferrera, M., Kapitanova, P., Belov, P., Irudayaraj, J. M. K., Boltasseva, A. & Shalaev, V. M., Jan 1 2017, CLEO: QELS_Fundamental Science, CLEO_QELS 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F42-CLEO_QELS 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Technical advances in global DNA methylation analysis in human cancers

Chowdhury, B., Cho, I. H. & Irudayaraj, J., Mar 1 2017, In : Journal of Biological Engineering. 11, 1, 10.

Research output: Contribution to journalReview article

Toxicological effects of trichloroethylene exposure on immune disorders

Ordaz, J. D., Damayanti, N. P. & Irudayaraj, J. M. K., Nov 2 2017, In : Immunopharmacology and Immunotoxicology. 39, 6, p. 305-317 13 p.

Research output: Contribution to journalReview article

Zinc oxide nanoparticles-induced reactive oxygen species promotes multimodal cyto- and epigenetic toxicity

Choudhury, S. R., Ordaz, J., Lo, C. L., Damayanti, N. P., Zhou, F. & Irudayaraj, J., Mar 1 2017, In : Toxicological Sciences. 156, 1, p. 261-274 14 p.

Research output: Contribution to journalArticle

2018

Alpha Lead Oxide (α-PbO): A New 2D Material with Visible Light Sensitivity

Kumar, P., Liu, J., Ranjan, P., Hu, Y., Yamijala, S. S. R. K. C., Pati, S. K., Irudayaraj, J. & Cheng, G. J., Mar 22 2018, In : Small. 14, 12, 1703346.

Research output: Contribution to journalArticle

An ultrasensitive aptasensor based on fluorescent resonant energy transfer and exonuclease-assisted target recycling for patulin detection

Wu, Z., Xu, E., Jin, Z. & Irudayaraj, J., May 30 2018, In : Food chemistry. 249, p. 136-142 7 p.

Research output: Contribution to journalArticle

Current technologies of electrochemical immunosensors: Perspective on signal amplification

Cho, I. H., Lee, J., Kim, J., Kang, M. S., Paik, J. K., Ku, S., Cho, H. M., Irudayaraj, J. & Kim, D. H., Jan 12 2018, In : Sensors (Switzerland). 18, 1, 207.

Research output: Contribution to journalReview article

Electrospun probiotics: An alternative for encapsulation

Akbar, Z., Zahoor, T., Huma, N., Jamil, A., Ayesha, H. & Irudayaraj, J. M. K., Nov 2018, In : Journal of Biological Regulators and Homeostatic Agents. 32, 6, p. 1551-1556 6 p.

Research output: Contribution to journalArticle

Exploring the anti-quorum sensing activity of a d-limonene nanoemulsion for Escherichia coli O157:H7

Wang, R., Vega, P., Xu, Y., Chen, C. Y. & Irudayaraj, J., Jul 2018, In : Journal of Biomedical Materials Research - Part A. 106, 7, p. 1979-1986 8 p.

Research output: Contribution to journalArticle

Impedimetric detection of bacteria by using a microfluidic chip and silver nanoparticle based signal enhancement

Wang, R., Xu, Y., Sors, T., Irudayaraj, J., Ren, W. & Wang, R., Mar 1 2018, In : Microchimica Acta. 185, 3, 184.

Research output: Contribution to journalArticle

Ultrasound beam steering of oxygen nanobubbles for enhanced bladder cancer therapy

Bhandari, P., Novikova, G., Goergen, C. J. & Irudayaraj, J., Dec 1 2018, In : Scientific reports. 8, 1, 3112.

Research output: Contribution to journalArticle

2019

Bioinspired glycosaminoglycan hydrogels via click chemistry for 3D dynamic cell encapsulation

Kuang, L., Damayanti, N. P., Jiang, C., Fei, X., Liu, W., Narayanan, N., Irudayaraj, J., Campanella, O. & Deng, M., Feb 5 2019, In : Journal of Applied Polymer Science. 136, 5, 47212.

Research output: Contribution to journalArticle

Correction to: Superplastic Formation of Metal Nanostructure Arrays with Ultrafine Gaps (Advanced Materials, (2016), 28, 41, (9152-9162), 10.1002/adma.201602497)

Hu, Y., Xuan, Y., Wang, X., Deng, B., Saei, M., Jin, S., Irudayaraj, J. & Cheng, G. J., Apr 5 2019, In : Advanced Materials. 31, 14, 1900190.

Research output: Contribution to journalComment/debate

Open Access

Epigenetic biomarker screening by FLIM-FRET for combination therapy in ER+ breast cancer

Liu, W., Cui, Y., Ren, W. & Irudayaraj, J., Jan 30 2019, In : Clinical epigenetics. 11, 1, 16.

Research output: Contribution to journalArticle

Epigenetic Process Monitoring in Live Cultures with Peptide Biosensors

Damayanti, N. P., Buno, K., Voytik Harbin, S. L. & Irudayaraj, J. M. K., Mar 22 2019, In : ACS Sensors. 4, 3, p. 562-565 4 p.

Research output: Contribution to journalArticle