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• 2011

  A microfabricated electrical differential counter for the selective enumeration of CD4+ T lymphocytes

  Watkins, N. N., Sridhar, S., Cheng, X., Chen, G. D., Toner, M., Rodriguez, W. & Bashir, R., Apr 21 2011, In: Lab on a chip. 11, 8, p. 1437-1447 11 p.

  Research output: Contribution to journal › Article › peer-review

  • T-cells
  • T-Lymphocytes
  • Leukocytes
  • Immobilized Antibodies
  • Cell Count

• Control of nanoscale environment to improve stability of immobilized proteins on diamond surfaces

  Radadia, A. D., Stavis, C. J., Carr, R., Zeng, H., King, W. P., Carlisle, J. A., Aksimentiev, A., Hamers, R. J. & Bashir, R., Mar 22 2011, In: Advanced Functional Materials. 21, 6, p. 1040-1050 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Immobilized Proteins
  • Diamond
  • Diamonds
  • Proteins
  • proteins

• Delving into BioMEMS

  Bashir, R., Khademhosseini, A. & Sia, S., Nov 1 2011, In: IEEE Pulse. 2, 6, 1 p., 6088916.

  Research output: Contribution to journal › Editorial › peer-review

• Electrical detection of dsDNA and polymerase chain reaction amplification

  Salm, E., Liu, Y. S., Marchwiany, D., Morisette, D., He, Y., Bhunia, A. K. & Bashir, R., Dec 2011, In: Biomedical microdevices. 13, 6, p. 973-982 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Polymerase chain reaction
  • DNA
  • Amplification
  • Pathogens
  • Deionized water

• Examining cellular interactions in 3-dimensional microenvironments

  Zorlutuna, P., Jeong, J. H., Kong, H. & Bashir, R., 2011, 24th European Conference on Biomaterials - Annual Conference of the European Society for Biomaterials, ESB 2011.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• High-k dielectric Al₂O₃ nanowire and nanoplate field effect sensors for improved pH sensing

  Reddy, B., Dorvel, B. R., Go, J., Nair, P. R., Elibol, O. H., Credo, G. M., Daniels, J. S., Chow, E. K. C., Su, X., Varma, M., Alam, M. A. & Bashir, R., Apr 2011, In: Biomedical microdevices. 13, 2, p. 335-344 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanowires
  • High-k dielectric
  • Aluminum oxide
  • Gate dielectrics
  • Equipment and Supplies

• How far cardiac cells can see each other mechanically

  Tang, X., Bajaj, P., Bashir, R. & Saif, T. A., Jul 7 2011, In: Soft Matter. 7, 13, p. 6151-6158 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Substrates
  • cells
  • Stiffness
  • Continuum mechanics
  • Tissue

• Independent control stiffness and permeability of a cell-encapsulating hydrogel; integration of bio-inspired material chemistry and microfabrication

  Jeong, J. H., Chan, V., Cha, C., Zorlutuna, P., Bashir, R. & Kong, H., Jan 1 2011, Materials Engineering and Sciences Division - Core Programming Topic at the 2011 AIChE Annual Meeting. AIChE, 1 p. (Materials Engineering and Sciences Division - Core Programming Topic at the 2011 AIChE Annual Meeting; vol. 2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Inverse-extraordianry optoconductance in Ti/Au/GaAs hybrid structures

  Newaz, A. K. M., Chang, W. J., Wallace, K. D., Wickline, S. A., Bashir, R., Gilbertson, A. M., Cohen, L. F., Edge, L. C. & Solin, S. A., Dec 1 2011, Physics of Semiconductors - 30th International Conference on the Physics of Semiconductors, ICPS-30. p. 973-974 2 p. (AIP Conference Proceedings; vol. 1399).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • hybrid structures
  • metals
  • luminous intensity
  • photons

• Label-free imaging of cell attachment with photonic crystal enhanced microscopy

  Lidstone, E. A., Chaudhery, V., Kohl, A., Chan, V., Wolf-Jensen, T., Schook, L. B., Bashir, R. & Cunningham, B. T., Sep 21 2011, In: Analyst. 136, 18, p. 3608-3615 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Optics and Photonics
  • Photonic crystals
  • Microscopic examination
  • Labels
  • microscopy

• Label-free intracellular transport measured by spatial light interference microscopy

  Wang, Z., Millet, L., Chan, V., Ding, H., Gillette, M. U., Bashir, R. & Popescu, G., Feb 2011, In: Journal of biomedical optics. 16, 2, 026019.

  Research output: Contribution to journal › Article › peer-review

  • Light interference
  • organelles
  • Microscopic examination
  • Photobleaching
  • Labels

• Lipid bilayer coated Al₂O₃ nanopore sensors: Towards a hybrid biological solid-state nanopore

  Venkatesan, B. M., Polans, J., Comer, J., Sridhar, S., Wendell, D., Aksimentiev, A. & Bashir, R., Aug 2011, In: Biomedical microdevices. 13, 4, p. 671-682 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Lipid bilayers
  • Nanopores
  • Lipid Bilayers
  • Aluminum oxide
  • Sensors

• MEMS mass sensors with uniform sensitivity for monitoring cellular apoptosis

  Park, K., Millet, L., Kim, N., Li, H., Hsia, K. J., Aluru, N. R. & Bashir, R., Sep 1 2011, 2011 16th International Solid-State Sensors, Actuators and Microsystems Conference, TRANSDUCERS'11. p. 759-762 4 p. 5969307. (2011 16th International Solid-State Sensors, Actuators and Microsystems Conference, TRANSDUCERS'11).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Cell death
  • MEMS
  • Cell growth
  • Monitoring
  • Sensors

• On a chip

  Watkins, N., Irimia, D., Toner, M. & Bashir, R., Nov 2011, In: IEEE Pulse. 2, 6, p. 19-27 9 p., 6088930.

  Research output: Contribution to journal › Article › peer-review

  • Emergency rooms
  • Ambulances
  • MEMS
  • Health

• Optical measurement of cycle-dependent cell growth

  Mir, M., Wang, Z., Shen, Z., Bednarz, M., Bashir, R., Golding, I., Prasanth, S. G. & Popescu, G., Aug 9 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 32, p. 13124-13129 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Cell Cycle
  • Growth
  • Interference Microscopy
  • Cell Size
  • Microscopy

• Pattern analysis and spatial distribution of neurons in culture

  Millet, L. J., Collens, M. B., Perry, G. L. W. & Bashir, R., Dec 1 2011, In: Integrative Biology. 3, 12, p. 1167-1178 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Spatial Analysis
  • Spatial distribution
  • Neurons
  • Neurology
  • Dendrites (metallography)

• Patterning the differentiation of C2C12 skeletal myoblasts

  Bajaj, P., Reddy, B., Millet, L., Wei, C., Zorlutuna, P., Bao, G. & Bashir, R., Sep 1 2011, In: Integrative Biology. 3, 9, p. 897-909 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Skeletal Myoblasts
  • Fusion reactions
  • Substrates
  • Cells
  • Muscle

• Separating beads and cells in multi-channel microfluidic devices using dielectrophoresis and laminar flow

  Millet, L. J., Park, K., Watkins, N. N., Jimmy Hsia, K. & Bashir, R., Feb 2011, In: Journal of Visualized Experiments. 48, e2545.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Electrophoresis
  • Microfluidics
  • Laminar flow
  • Fluidics

• Silicon field effect transistors as dual-use sensor-heater hybrids

  Reddy, B., Elibol, O. H., Nair, P. R., Dorvel, B. R., Butler, F., Ahsan, Z., Bergstrom, D. E., Alam, M. A. & Bashir, R., Feb 1 2011, In: Analytical Chemistry. 83, 3, p. 888-895 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Silicon
  • Field effect transistors
  • Transistors
  • Dielectric heating
  • Sensors

• Stereolithography-based hydrogel microenvironments to examine cellular interactions

  Zorlutuna, P., Jeong, J. H., Kong, H. & Bashir, R., Oct 7 2011, In: Advanced Functional Materials. 21, 19, p. 3642-3651 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Neurons
  • Choline

• Surface functionalization of thin-film diamond for highly stable and selective biological interfaces

  Stavis, C., Clare, T. L., Butler, J. E., Radadia, A. D., Carr, R., Zeng, H., King, W. P., Carlisle, J. A., Aksimentiev, A., Bashir, R. & Hamers, R. J., Jan 18 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 3, p. 983-988 6 p.

  Research output: Contribution to journal › Review article › peer-review

  • Diamond
  • Photoelectron Spectroscopy
  • Carbon
  • Ethylene Glycol
  • Alkenes

• Surface immobilizable chelator for label-free electrical detection of pyrophosphate

  Liu, D. J., Credo, G. M., Su, X., Wu, K., Lim, H. C., Elibol, O. H., Bashir, R. & Varma, M., Aug 7 2011, In: Chemical Communications. 47, 29, p. 8310-8312 3 p.

  Research output: Contribution to journal › Article › peer-review

  • diphosphoric acid
  • Chelating Agents
  • Labels
  • Silicon
  • Field effect transistors
• 2015

  A semiconductor bio-electrical platform with addressable thermal control circuits for accelerated bioassay development

  Chen, T. T., Wen, C. H., Huang, J. C., Peng, Y. C., Liu, S., Su, S. H., Cheng, L. H., Lai, H. C., Liao, T. C., Lai, F. L., Cheng, C. W., Yang, C. K., Yang, J. H., Hsieh, Y. J., Salm, E., Reddy, B., Tsui, F., Liu, Y. S., Bashir, R. & Chen, M., Feb 20 2015, In: Technical Digest - International Electron Devices Meeting, IEDM. 2015-February, February, p. 15.4.1-15.4.4 7047058.

  Research output: Contribution to journal › Conference article › peer-review

  • Bioassay
  • bioassay
  • Semiconductor materials
  • platforms
  • pixels

• Biodegradable thin metal foils and spin-on glass materials for transient electronics

  Kang, S. K., Hwang, S. W., Yu, S., Seo, J. H., Corbin, E. A., Shin, J., Wie, D. S., Bashir, R., Ma, Z. & Rogers, J. A., Mar 25 2015, In: Advanced Functional Materials. 25, 12, p. 1789-1797 9 p.

  Research output: Contribution to journal › Article › peer-review

  • metal foils
  • Metal foil
  • Glass
  • encapsulating
  • glass

• Biophysical properties of human breast cancer cells measured using silicon MEMS resonators and atomic force microscopy

  Corbin, E. A., Kong, F., Lim, C. T., King, W. P. & Bashir, R., Feb 7 2015, In: Lab on a chip. 15, 3, p. 839-847 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Micro-Electrical-Mechanical Systems
  • Atomic force microscopy
  • Atomic Force Microscopy
  • Silicon
  • Cells

• Electronic desalting for controlling the ionic environment in droplet-based biosensing platforms

  Swaminathan, V. V., Dak, P., Reddy, B., Salm, E., Duarte-Guevara, C., Zhong, Y., Fischer, A., Liu, Y. S., Alam, M. A. & Bashir, R., Feb 2 2015, In: Applied Physics Letters. 106, 5, 053105.

  Research output: Contribution to journal › Article › peer-review

  • salts
  • platforms
  • electronics
  • platinum black
  • electrodes

• Engineering as a new frontier for translational medicine

  Chien, S., Bashir, R., Nerem, R. M. & Pettigrew, R., Apr 1 2015, In: Science Translational Medicine. 7, 281, 281fs13.

  Research output: Contribution to journal › Article › peer-review

  • Translational Medical Research
  • Medicine
  • Delivery of Health Care
  • Therapeutics

• Enhanced sub-micron colloidal particle separation with interdigitated microelectrode arrays using mixed AC/DC dielectrophoretic scheme

  Swaminathan, V. V., Shannon, M. A. & Bashir, R., Apr 2015, In: Biomedical microdevices. 17, 2

  Research output: Contribution to journal › Article › peer-review

  • Microelectrodes
  • Electrodes
  • 1-(2-(dodecyloxy)ethyl)pyrrolidine hydrochloride
  • DNA Viruses
  • Static Electricity

• Fabrication and characterization of optogenetic, multi-strip cardiac muscles

  Chan, V., Neal, D. M., Uzel, S. G. M., Kim, H., Bashir, R. & Asada, H. H., May 21 2015, In: Lab on a chip. 15, 10, p. 2258-2268 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Muscle
  • Myocardium
  • Fabrication
  • Tissue engineering

• Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction

  Lee, M. K., Rich, M. H., Shkumatov, A., Jeong, J. H., Boppart, M. D., Bashir, R., Gillette, M. U., Lee, J. & Kong, H., Jan 1 2015, In: Advanced Healthcare Materials. 4, 2, p. 195-201 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Glaciers
  • Ice Cover
  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Microchannels

• Graphene-Based Platform for Infrared Near-Field Nanospectroscopy of Water and Biological Materials in an Aqueous Environment

  Khatib, O., Wood, J. D., McLeod, A. S., Goldflam, M. D., Wagner, M., Damhorst, G. L., Koepke, J. C., Doidge, G. P., Rangarajan, A., Bashir, R., Pop, E., Lyding, J. W., Thiemens, M. H., Keilmann, F. & Basov, D. N., Aug 25 2015, In: ACS Nano. 9, 8, p. 7968-7975 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Graphite
  • Biological materials
  • Graphene
  • Near field scanning optical microscopy
  • viruses

• Impedance microbiology and microbial screening strategy for detecting pathogens in food

  Flint, S., Naila, A. & Bashir, R., Jan 1 2015, High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 285-300 16 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Microbiology
  • Pathogens
  • food pathogens
  • microbiology
  • Electric Impedance

• Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

  Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In: Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Shape optimization
  • Muscle
  • Tissue
  • Skeletal Muscle
  • Muscles

• Microfluidics and Nanotechnology for Detection of Global Infectious Diseases

  Damhorst, G. L., Murtagh, M., Rodriguez, W. R. & Bashir, R., Feb 1 2015, In: Proceedings of the IEEE. 103, 2, p. 150-160 11 p., 7067024.

  Research output: Contribution to journal › Review article › peer-review

  • Nanotechnology
  • Microfluidics
  • Viruses
  • Pathogens
  • Industry

• Nanopore-based assay for detection of methylation in double-stranded DNA fragments

  Shim, J., Kim, Y., Humphreys, G. I., Nardulli, A. M., Kosari, F., Vasmatzis, G., Taylor, W. R., Ahlquist, D. A., Myong, S. & Bashir, R., Jan 27 2015, In: ACS Nano. 9, 1, p. 290-300 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Methylation
  • methylation
  • Nanopores
  • Assays
  • DNA

• On-chip metal/polypyrrole quasi-reference electrodes for robust ISFET operation

  Duarte-Guevara, C., Swaminathan, V. V., Burgess, M., Reddy, B., Salm, E., Liu, Y. S., Rodriguez-Lopez, J. & Bashir, R., May 21 2015, In: Analyst. 140, 10, p. 3630-3641 12 p.

  Research output: Contribution to journal › Article › peer-review

  • polypyrrole
  • Ion sensitive field effect transistors
  • Polypyrroles
  • Ion-Selective Electrodes
  • Metals

• Optomechanical measurement of the stiffness of single adherent cells

  Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In: Lab on a chip. 15, 17, p. 3460-3464 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Substrates
  • Stiffness
  • Mechanical properties
  • Phase shift
  • Lasers

• Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes

  Neiman, J. A. S., Raman, R., Chan, V., Rhoads, M. G., Raredon, M. S. B., Velazquez, J. J., Dyer, R. L., Bashir, R., Hammond, P. T. & Griffith, L. G., Apr 1 2015, In: Biotechnology and bioengineering. 112, 4, p. 777-787 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Hepatocytes
  • Stereolithography
  • Hydrogels
  • Scaffolds
  • Polyethylene Glycol Dimethacrylate Hydrogel

• Slowing DNA transport using graphene-DNA interactions

  Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In: Advanced Functional Materials. 25, 6, p. 936-946 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Graphite
  • Graphene
  • Nanopores
  • graphene
  • interactions

• Smartphone-Imaged HIV-1 Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) on a Chip from Whole Blood

  Damhorst, G. L., Duarte-Guevara, C., Chen, W., Ghonge, T., Cunningham, B. T. & Bashir, R., Sep 1 2015, In: Engineering. 1, 3, p. 324-335 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Viruses
  • Transcription
  • Amplification
  • Smartphones
  • Blood

• Stereolithographic 3D bioprinting for biomedical applications

  Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bioprinting
  • Stereolithography
  • Medical applications
  • Regenerative Medicine
  • Fabrication

• Tip-based nanofabrication of arbitrary shapes of graphene nanoribbons for device applications

  Hu, H., Banerjee, S., Estrada, D., Bashir, R. & King, W. P., 2015, In: RSC Advances. 5, 46, p. 37006-37012 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanoribbons
  • Graphite
  • Carbon Nanotubes
  • Graphene
  • Nanotechnology
• 2018

  3D printing for preoperative planning and surgical training: a review

  Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J., Kesavadas, T. & Bashir, R., Sep 1 2018, In: Biomedical microdevices. 20, 3, 65.

  Research output: Contribution to journal › Review article › peer-review

  • Three-Dimensional Printing
  • Printing
  • Audiovisual Aids
  • Planning
  • Diagnostic Imaging

• A microfluidic biochip platform for electrical quantification of proteins

  Valera, E., Berger, J., Hassan, U., Ghonge, T., Liu, J., Rappleye, M., Winter, J., Abboud, D., Haidry, Z., Healey, R., Hung, N. T., Leung, N., Mansury, N., Hasnain, A., Lannon, C., Price, Z., White, K. & Bashir, R., May 21 2018, In: Lab on a chip. 18, 10, p. 1461-1470 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Biochips
  • Biomarkers
  • Microfluidics
  • Proteins
  • Sepsis

• Biodegradable Monocrystalline Silicon Photovoltaic Microcells as Power Supplies for Transient Biomedical Implants

  Lu, L., Yang, Z., Meacham, K., Cvetkovic, C., Corbin, E. A., Vázquez-Guardado, A., Xue, M., Yin, L., Boroumand, J., Pakeltis, G., Sang, T., Yu, K. J., Chanda, D., Bashir, R., Gereau, R. W., Sheng, X. & Rogers, J. A., Jun 5 2018, In: Advanced Energy Materials. 8, 16, 1703035.

  Research output: Contribution to journal › Article › peer-review

  • Monocrystalline silicon
  • Oils and fats
  • Wavelength
  • Skin
  • Tissue

• Detecting sepsis by observing neutrophil motility

  Hassan, U., Valera, E. & Bashir, R., Apr 1 2018, In: Nature biomedical engineering. 2, 4, p. 197-198 2 p.

  Research output: Contribution to journal › Article › peer-review

• Mobile biosensing using the sensing capabilities of smartphone cameras

  Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., Ganguli, A., Lumetta, S. & Bashir, R., Jan 4 2018, 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; vol. 2018-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Smartphones
  • cameras
  • Image processing
  • Health
  • Cameras

• Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

  Hassan, U., Zhu, R. & Bashir, R., Apr 21 2018, In: Lab on a chip. 18, 8, p. 1231-1240 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Biosensing Techniques
  • Biosensors
  • Sepsis
  • Multivariate Analysis
  • Systemic Inflammatory Response Syndrome

• Optomechanical microrheology of single adherent cancer cells

  Adeniba, O. O., Corbin, E. A., Ewoldt, R. H. & Bashir, R., Mar 1 2018, In: APL Bioengineering. 2, 1, 016108.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cells
  • Viscoelastic Substances
  • Cell membranes
  • Soft materials
  • Mechanical properties

• Perspective: The promise of multi-cellular engineered living systems

  Kamm, R. D., Bashir, R., Arora, N., Dar, R. D., Gillette, M. U., Griffith, L. G., Kemp, M. L., Kinlaw, K., Levin, M., Martin, A. C., McDevitt, T. C., Nerem, R. M., Powers, M. J., Saif, T. A., Sharpe, J., Takayama, S., Takeuchi, S., Weiss, R., Ye, K., Yevick, H. G. & 1 others, Zaman, M. H., Dec 1 2018, In: APL Bioengineering. 2, 4, 040901.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Bioprinting
  • Cytology
  • Stem cells
  • Organoids
  • Assays