Find Research outputs

Search results

• Mobile Platform for Multiplexed Detection and Differentiation of Disease-Specific Nucleic Acid Sequences, Using Microfluidic Loop-Mediated Isothermal Amplification and Smartphone Detection

  Chen, W., Yu, H., Sun, F., Ornob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Nov 7 2017, In: Analytical chemistry. 89, 21, p. 11219-11226 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Nucleic acid sequences
  • Pathogens
  • Microfluidics
  • Amplification
  • Smartphones

• Monolayer MoS ₂ Nanoribbon Transistors Fabricated by Scanning Probe Lithography

  Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., Van Der Zande, A. M. & King, W. P., Mar 13 2019, In: Nano letters. 19, 3, p. 2092-2098 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanoribbons
  • Carbon Nanotubes
  • Monolayers
  • Lithography
  • Transistors

• Multi-cellular engineered living systems: Building a community around responsible research on emergence

  Sample, M., Boulicault, M., Allen, C., Bashir, R., Hyun, I., Levis, M., Lowenthal, C., Mertz, D., Montserrat, N., Palmer, M. J., Saha, K. & Zartman, J., Jul 10 2019, In: Biofabrication. 11, 4, 043001.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Seizing
  • Civil Rights
  • Organoids
  • Technology
  • Social Responsibility

• Multiplexed detection of infectious diseases with microfluidic loop-mediated isothermal amplification and a smartphone

  Sun, F., Chen, W., Yu, H., Omob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Dec 19 2017, 2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017. Institute of Electrical and Electronics Engineers Inc., p. 241-244 4 p. (2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017; vol. 2017-December).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • pathogens
  • Pathogens
  • infectious diseases
  • Smartphone
  • Microfluidics

• Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

  Hassan, U., Zhu, R. & Bashir, R., Apr 21 2018, In: Lab on a chip. 18, 8, p. 1231-1240 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Biosensing Techniques
  • Biosensors
  • Sepsis
  • Multivariate Analysis
  • Systemic Inflammatory Response Syndrome

• Nanopore-based assay for detection of methylation in double-stranded DNA fragments

  Shim, J., Kim, Y., Humphreys, G. I., Nardulli, A. M., Kosari, F., Vasmatzis, G., Taylor, W. R., Ahlquist, D. A., Myong, S. & Bashir, R., Jan 27 2015, In: ACS Nano. 9, 1, p. 290-300 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Methylation
  • methylation
  • Nanopores
  • Assays
  • DNA

• Neuromuscular actuation of biohybrid motile bots

  Aydin, O., Zhang, X., Nuethong, S., Pagan-Diaz, G. J., Bashir, R., Gazzola, M. & Saif, M. T. A., Oct 1 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 40, p. 19841-19847 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Muscles
  • Locomotion
  • Motor Neurons
  • Optogenetics
  • Myoblasts

• On a chip

  Watkins, N., Irimia, D., Toner, M. & Bashir, R., Nov 2011, In: IEEE Pulse. 2, 6, p. 19-27 9 p., 6088930.

  Research output: Contribution to journal › Article › peer-review

  • Emergency rooms
  • Ambulances
  • MEMS
  • Health

• On-chip metal/polypyrrole quasi-reference electrodes for robust ISFET operation

  Duarte-Guevara, C., Swaminathan, V. V., Burgess, M., Reddy, B., Salm, E., Liu, Y. S., Rodriguez-Lopez, J. & Bashir, R., May 21 2015, In: Analyst. 140, 10, p. 3630-3641 12 p.

  Research output: Contribution to journal › Article › peer-review

  • polypyrrole
  • Ion sensitive field effect transistors
  • Polypyrroles
  • Ion-Selective Electrodes
  • Metals

• Optical measurement of cycle-dependent cell growth

  Mir, M., Wang, Z., Shen, Z., Bednarz, M., Bashir, R., Golding, I., Prasanth, S. G. & Popescu, G., Aug 9 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 32, p. 13124-13129 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Cell Cycle
  • Growth
  • Interference Microscopy
  • Cell Size
  • Microscopy

• Optomechanical measurement of the stiffness of single adherent cells

  Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In: Lab on a chip. 15, 17, p. 3460-3464 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Substrates
  • Stiffness
  • Mechanical properties
  • Phase shift
  • Lasers

• Optomechanical microrheology of single adherent cancer cells

  Adeniba, O. O., Corbin, E. A., Ewoldt, R. H. & Bashir, R., Mar 1 2018, In: APL Bioengineering. 2, 1, 016108.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cells
  • Viscoelastic Substances
  • Cell membranes
  • Soft materials
  • Mechanical properties

• Pattern analysis and spatial distribution of neurons in culture

  Millet, L. J., Collens, M. B., Perry, G. L. W. & Bashir, R., Dec 1 2011, In: Integrative Biology. 3, 12, p. 1167-1178 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Spatial Analysis
  • Spatial distribution
  • Neurons
  • Neurology
  • Dendrites (metallography)

• Patterning the differentiation of C2C12 skeletal myoblasts

  Bajaj, P., Reddy, B., Millet, L., Wei, C., Zorlutuna, P., Bao, G. & Bashir, R., Sep 1 2011, In: Integrative Biology. 3, 9, p. 897-909 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Skeletal Myoblasts
  • Fusion reactions
  • Substrates
  • Cells
  • Muscle

• Perspective: The promise of multi-cellular engineered living systems

  Kamm, R. D., Bashir, R., Arora, N., Dar, R. D., Gillette, M. U., Griffith, L. G., Kemp, M. L., Kinlaw, K., Levin, M., Martin, A. C., McDevitt, T. C., Nerem, R. M., Powers, M. J., Saif, T. A., Sharpe, J., Takayama, S., Takeuchi, S., Weiss, R., Ye, K., Yevick, H. G. & 1 others, Zaman, M. H., Dec 1 2018, In: APL Bioengineering. 2, 4, 040901.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Bioprinting
  • Cytology
  • Stem cells
  • Organoids
  • Assays

• Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes

  Neiman, J. A. S., Raman, R., Chan, V., Rhoads, M. G., Raredon, M. S. B., Velazquez, J. J., Dyer, R. L., Bashir, R., Hammond, P. T. & Griffith, L. G., Apr 1 2015, In: Biotechnology and bioengineering. 112, 4, p. 777-787 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Hepatocytes
  • Stereolithography
  • Hydrogels
  • Scaffolds
  • Polyethylene Glycol Dimethacrylate Hydrogel

• Pixelated spatial gene expression analysis from tissue

  Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In: Nature communications. 9, 1, 202.

  Research output: Contribution to journal › Article › peer-review

  • gene expression
  • Gene expression
  • Tissue
  • ribonucleic acids
  • Amplification

• Point-of-care sensors for the management of sepsis

  Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In: Nature biomedical engineering. 2, 9, p. 640-648 9 p.

  Research output: Contribution to journal › Review article › peer-review

  • Point-of-Care Systems
  • Sepsis
  • Health
  • Sensors
  • Infection

• Robust label-free microRNA detection using one million ISFET array

  Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In: Biomedical microdevices. 20, 2, 1 p.

  Research output: Contribution to journal › Article › peer-review

  • Ion sensitive field effect transistors
  • Nucleic acids
  • Assays
  • Nucleic Acids
  • Molecules

• Separating beads and cells in multi-channel microfluidic devices using dielectrophoresis and laminar flow

  Millet, L. J., Park, K., Watkins, N. N., Jimmy Hsia, K. & Bashir, R., Feb 2011, In: Journal of Visualized Experiments. 48, e2545.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Electrophoresis
  • Microfluidics
  • Laminar flow
  • Fluidics

• Silicon field effect transistors as dual-use sensor-heater hybrids

  Reddy, B., Elibol, O. H., Nair, P. R., Dorvel, B. R., Butler, F., Ahsan, Z., Bergstrom, D. E., Alam, M. A. & Bashir, R., Feb 1 2011, In: Analytical Chemistry. 83, 3, p. 888-895 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Silicon
  • Field effect transistors
  • Transistors
  • Dielectric heating
  • Sensors

• Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines

  Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In: Advanced Functional Materials. 28, 23, 1801145.

  Research output: Contribution to journal › Article › peer-review

  • walking machines
  • Scaffolds
  • Tissue
  • Robotics
  • Actuators

• Slowing DNA transport using graphene-DNA interactions

  Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In: Advanced Functional Materials. 25, 6, p. 936-946 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Graphite
  • Graphene
  • Nanopores
  • graphene
  • interactions

• Smartphone-Imaged HIV-1 Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) on a Chip from Whole Blood

  Damhorst, G. L., Duarte-Guevara, C., Chen, W., Ghonge, T., Cunningham, B. T. & Bashir, R., Sep 1 2015, In: Engineering. 1, 3, p. 324-335 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Viruses
  • Transcription
  • Amplification
  • Smartphones
  • Blood

• Smartphone-imaged microfluidic biochip for measuring CD64 expression from whole blood

  Ghonge, T., Ceylan Koydemir, H., Valera, E., Berger, J., Garcia, C., Nawar, N., Tiao, J., Damhorst, G. L., Ganguli, A., Hassan, U., Ozcan, A. & Bashir, R., Jul 7 2019, In: Analyst. 144, 13, p. 3925-3935 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Flow cytometry
  • Biochips
  • Smartphone
  • Microfluidics
  • flow cytometry

• Stereolithographic 3D bioprinting for biomedical applications

  Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bioprinting
  • Stereolithography
  • Medical applications
  • Regenerative Medicine
  • Fabrication

• Stereolithography-based hydrogel microenvironments to examine cellular interactions

  Zorlutuna, P., Jeong, J. H., Kong, H. & Bashir, R., Oct 7 2011, In: Advanced Functional Materials. 21, 19, p. 3642-3651 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Neurons
  • Choline

• Surface functionalization of thin-film diamond for highly stable and selective biological interfaces

  Stavis, C., Clare, T. L., Butler, J. E., Radadia, A. D., Carr, R., Zeng, H., King, W. P., Carlisle, J. A., Aksimentiev, A., Bashir, R. & Hamers, R. J., Jan 18 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 3, p. 983-988 6 p.

  Research output: Contribution to journal › Review article › peer-review

  • Diamond
  • Photoelectron Spectroscopy
  • Carbon
  • Ethylene Glycol
  • Alkenes

• Surface immobilizable chelator for label-free electrical detection of pyrophosphate

  Liu, D. J., Credo, G. M., Su, X., Wu, K., Lim, H. C., Elibol, O. H., Bashir, R. & Varma, M., Aug 7 2011, In: Chemical Communications. 47, 29, p. 8310-8312 3 p.

  Research output: Contribution to journal › Article › peer-review

  • diphosphoric acid
  • Chelating Agents
  • Labels
  • Silicon
  • Field effect transistors

• Tip-based nanofabrication of arbitrary shapes of graphene nanoribbons for device applications

  Hu, H., Banerjee, S., Estrada, D., Bashir, R. & King, W. P., 2015, In: RSC Advances. 5, 46, p. 37006-37012 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanoribbons
  • Graphite
  • Carbon Nanotubes
  • Graphene
  • Nanotechnology