Find Research outputs — University of Illinois Urbana-Champaign

Article

¹³C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study

Jeon, S., Li, Q., Rubakhin, S. S., Sweedler, J. V., Smith, J. W., Neuringer, M., Kuchan, M. & Erdman, J. W., Jan 2019, In: Nutrition Research. 61, p. 102-108 7 p.

Research output: Contribution to journal › Article › peer-review

3D-Printed pHEMA Materials for Topographical and Biochemical Modulation of Dorsal Root Ganglion Cell Response

Badea, A., McCracken, J. M., Tillmaand, E. G., Kandel, M. E., Oraham, A. W., Mevis, M. B., Rubakhin, S. S., Popescu, G., Sweedler, J. V. & Nuzzo, R. G., Sep 13 2017, In: ACS Applied Materials and Interfaces. 9, 36, p. 30318-30328 11 p.

Research output: Contribution to journal › Article › peer-review

Accurate assignment of significance to neuropeptide identifications using monte carlo K-permuted decoy databases

Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 17 2014, In: PloS one. 9, 10, e111112.

Research output: Contribution to journal › Article › peer-review

A D-amino acid-containing neuropeptide discovery funnel

Livnat, I., Tai, H. C., Jansson, E. T., Bai, L., Romanova, E. V., Chen, T. T., Yu, K., Chen, S. A., Zhang, Y., Wang, Z. Y., Liu, D. D., Weiss, K. R., Jing, J. & Sweedler, J. V., Dec 6 2016, In: Analytical Chemistry. 88, 23, p. 11868-11876 9 p.

Research output: Contribution to journal › Article › peer-review

A diverse family of novel peptide toxins from an unusual cone snail, Conus californicus

Gilly, W. F., Richmond, T. A., Duda, T. F., Elliger, C., Lebaric, Z., Schulz, J., Bingham, J. P. & Sweedler, J. V., Jan 2011, In: Journal of Experimental Biology. 214, 1, p. 147-161 15 p.

Research output: Contribution to journal › Article › peer-review

A high spatiotemporal study of somatic exocytosis with scanning electrochemical microscopy and nanoITIES electrodes

Welle, T. M., Alanis, K., Colombo, M. L., Sweedler, J. V. & Shen, M., 2018, In: Chemical Science. 9, 22, p. 4937-4941 5 p.

Research output: Contribution to journal › Article › peer-review

Analysis of endogenous nucleotides by single cell capillary electrophoresis-mass spectrometry

Liu, J. X., Aerts, J. T., Rubakhin, S. S., Zhang, X. X. & Sweedler, J. V., Oct 15 2014, In: Analyst. 139, 22, p. 5835-5842 8 p.

Research output: Contribution to journal › Article › peer-review

A neuron-in-capillary platform for facile collection and mass spectrometric characterization of a secreted neuropeptide

Lee, C. Y., Fan, Y., Rubakhin, S. S., Yoon, S. & Sweedler, J. V., Jun 1 2016, In: Scientific reports. 6, 26940.

Research output: Contribution to journal › Article › peer-review

A novel pyridoxal 5'-phosphate-dependent amino acid racemase in the aplysia californica central nervous system

Wang, L., Ota, N., Romanova, E. V. & Sweedler, J. V., Apr 15 2011, In: Journal of Biological Chemistry. 286, 15, p. 13765-13774 10 p.

Research output: Contribution to journal › Article › peer-review

A one-step matrix application method for MALDI mass spectrometry imaging of bacterial colony biofilms

Li, B., Comi, T. J., Si, T., Dunham, S. J. B. & Sweedler, J. V., Nov 1 2016, In: Journal of Mass Spectrometry. 51, 11, p. 1030-1035 6 p.

Research output: Contribution to journal › Article › peer-review

Aplysia allatotropin-related peptide and its newly identified D-amino acid-containing epimer both activate a receptor and a neuronal target

Checco, J. W., Zhang, G., Yuan, W. D., Le, Z. W., Jing, J. & Sweedler, J. V., Oct 26 2019, In: Journal of Biological Chemistry. 293, 43, p. 16862-16873 12 p.

Research output: Contribution to journal › Article › peer-review

Aplysia locomotion: Network and behavioral actions of GdFFD, a D-amino acid-containing neuropeptide

Yang, C. Y., Yu, K., Wang, Y., Chen, S. A., Liu, D. D., Wang, Z. Y., Su, Y. N., Yang, S. Z., Chen, T. T., Livnat, I., Vilim, F. S., Cropper, E. C., Weiss, K. R., Sweedler, J. V. & Jing, J., Jan 1 2016, In: PloS one. 11, 1, e0147335.

Research output: Contribution to journal › Article › peer-review

A rotifer-derived paralytic compound prevents transmission of schistosomiasis to a mammalian host

Gao, J., Yang, N., Lewis, F. A., Yau, P., Collins, J. J., Sweedler, J. V. & Newmark, P. A., Oct 17 2019, In: PLoS biology. 17, 10, e3000485.

Research output: Contribution to journal › Article › peer-review

Open Access

A unique combination of micronutrients rejuvenates cognitive performance in aged mice

Perez, S. D., Du, K., Rendeiro, C., Wang, L., Wu, Q., Rubakhin, S. S., Vazhappilly, R., Baxter, J. H., Sweedler, J. V. & Rhodes, J. S., Mar 1 2017, In: Behavioural Brain Research. 320, p. 97-112 16 p.

Research output: Contribution to journal › Article › peer-review

A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms

Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., King, T. L., Amaya, K. R., Arnett, C. M. & Sweedler, J. V., Jun 5 2018, In: Analytical Chemistry. 90, 11, p. 6725-6734 10 p.

Research output: Contribution to journal › Article › peer-review

Biomolecular imaging with a C₆₀-SIMS/MALDI dual ion source hybrid mass spectrometer: Instrumentation, matrix enhancement, and single cell analysis

Lanni, E. J., Dunham, S. J. B., Nemes, P., Rubakhin, S. S. & Sweedler, J. V., Nov 2014, In: Journal of the American Society for Mass Spectrometry. 25, 11, p. 1897-1907 11 p.

Research output: Contribution to journal › Article › peer-review

Carrot solution culture bioproduction of uniformly labeled ¹³C-lutein and in vivo dosing in non-human primates

Smith, J. W., Rogers, R. B., Jeon, S., Rubakhin, S. S., Wang, L., Sweedler, J. V., Neuringer, M., Kuchan, M. J. & Erdman, J. W., Feb 1 2017, In: Experimental Biology and Medicine. 242, 3, p. 305-315 11 p.

Research output: Contribution to journal › Article › peer-review

Characterization of bacillus subtilis colony biofilms via mass spectrometry and fluorescence imaging

Si, T., Li, B., Zhang, K., Xu, Y., Zhao, H. & Sweedler, J. V., Jun 3 2016, In: Journal of Proteome Research. 15, 6, p. 1955-1962 8 p.

Research output: Contribution to journal › Article › peer-review

Chiral Measurement of Aspartate and Glutamate in Single Neurons by Large-Volume Sample Stacking Capillary Electrophoresis

Patel, A. V., Kawai, T., Wang, L., Rubakhin, S. S. & Sweedler, J. V., Nov 21 2017, In: Analytical Chemistry. 89, 22, p. 12375-12382 8 p.

Research output: Contribution to journal › Article › peer-review

Chronic morphine alters the presynaptic protein profile: Identification of novel molecular targets using proteomics and network analysis

Abul-Husn, N. S., Annangudi, S. P., Ma'ayan, A., Ramos-Ortolaza, D. L., Stockton, S. D., Gomes, I., Sweedler, J. V. & Devi, L. A., Oct 17 2011, In: PloS one. 6, 10, e25535.

Research output: Contribution to journal › Article › peer-review

Classification of Large Cellular Populations and Discovery of Rare Cells Using Single Cell Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry

Ong, T. H., Kissick, D. J., Jansson, E. T., Comi, T. J., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Jul 21 2015, In: Analytical Chemistry. 87, 14, p. 7036-7042 7 p.

Research output: Contribution to journal › Article › peer-review

Collection of peptides released from single neurons with particle-embedded monolithic capillaries followed by detection with matrix-assisted laser desorption/ionization mass spectrometry

Fan, Y., Rubakhin, S. & Sweedler, J. V., Dec 15 2011, In: Analytical Chemistry. 83, 24, p. 9557-9563 7 p.

Research output: Contribution to journal › Article › peer-review

Comparing label-free quantitative peptidomics approaches to characterize diurnal variation of peptides in the rat suprachiasmatic nucleus

Southey, B. R., Lee, J. E., Zamdborg, L., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Jan 7 2014, In: Analytical Chemistry. 86, 1, p. 443-452 10 p.

Research output: Contribution to journal › Article › peer-review

Conformational investigation of the structure-activity relationship of GdFFD and its analogues on an achatin-like neuropeptide receptor of: Aplysia californica involved in the feeding circuit

Do, T. D., Checco, J. W., Tro, M., Shea, J. E., Bowers, M. T. & Sweedler, J. V., 2018, In: Physical Chemistry Chemical Physics. 20, 34, p. 22047-22057 11 p.

Research output: Contribution to journal › Article › peer-review

Correction: Spatial organization of Pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy

Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 6058-6060 3 p.

Research output: Contribution to journal › Article › peer-review

Correlated imaging with C₆₀-SIMS and confocal raman microscopy: Visualization of cell-scale molecular distributions in bacterial biofilms

Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Dunham, S. J. B., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 30 2014, In: Analytical chemistry. 86, 21, p. 10885-10891 7 p.

Research output: Contribution to journal › Article › peer-review

D-Alanine in the islets of Langerhans of rat pancreas

Ota, N., Rubakhin, S. S. & Sweedler, J. V., May 2 2014, In: Biochemical and Biophysical Research Communications. 447, 2, p. 328-333 6 p.

Research output: Contribution to journal › Article › peer-review

Deterministic Integration of Biological and Soft Materials onto 3D Microscale Cellular Frameworks

McCracken, J. M., Xu, S., Badea, A., Jang, K. I., Yan, Z., Wetzel, D. J., Nan, K., Lin, Q., Han, M., Anderson, M. A., Lee, J. W., Wei, Z., Pharr, M., Wang, R., Su, J., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A. & Nuzzo, R. G., Sep 2017, In: Advanced Biosystems. 1, 9, 1700068.

Research output: Contribution to journal › Article › peer-review

Open Access

Differential peptidomics assessment of strain and age differences in mice in response to acute cocaine administration

Romanova, E. V., Rubakhin, S. S., Ossyra, J. R., Zombeck, J. A., Nosek, M. R., Sweedler, J. V. & Rhodes, J. S., Dec 1 2015, In: Journal of Neurochemistry. 135, 5, p. 1038-1048 11 p.

Research output: Contribution to journal › Article › peer-review

Discovery of leucokinin-like neuropeptides that modulate a specific parameter of feeding motor programs in the molluscan model, Aplysia

Zhang, G., Vilim, F. S., Liu, D. D., Romanova, E. V., Yu, K., Yuan, W. D., Xiao, H., Hummon, A. B., Chen, T. T., Alexeeva, V., Yin, S. Y., Chen, S. A., Cropper, E. C., Sweedler, J. V., Weiss, K. R. & Jing, J., Nov 17 2017, In: Journal of Biological Chemistry. 292, 46, p. 18775-18789 15 p.

Research output: Contribution to journal › Article › peer-review

Disruption of microglia histone acetylation and protein pathways in mice exhibiting inflammation-associated depression-like symptoms

Rodriguez-Zas, S. L., Wu, C., Southey, B. R., O'Connor, J. C., Nixon, S. E., Garcia, R., Zavala, C., Lawson, M., McCusker, R. H., Romanova, E. V., Sweedler, J. V., Kelley, K. W. & Dantzer, R., Nov 2018, In: Psychoneuroendocrinology. 97, p. 47-58 12 p.

Research output: Contribution to journal › Article › peer-review

Distinguishing endogenous d-amino acid-containing neuropeptides in individual neurons using tandem mass spectrometry

Bai, L., Romanova, E. V. & Sweedler, J. V., Apr 1 2011, In: Analytical Chemistry. 83, 7, p. 2794-2800 7 p.

Research output: Contribution to journal › Article › peer-review

Diversity of conotoxin types from Conus californicus reflects a diversity of prey types and a novel evolutionary history

Elliger, C. A., Richmond, T. A., Lebaric, Z. N., Pierce, N. T., Sweedler, J. V. & Gilly, W. F., Feb 2011, In: Toxicon. 57, 2, p. 311-322 12 p.

Research output: Contribution to journal › Article › peer-review

Dopamine-modified TiO₂ monolith-assisted LDI MS imaging for simultaneous localization of small metabolites and lipids in mouse brain tissue with enhanced detection selectivity and sensitivity

Wu, Q., Chu, J. L., Rubakhin, S. S., Gillette, M. U. & Sweedler, J. V., 2017, In: Chemical Science. 8, 5, p. 3926-3938 13 p.

Research output: Contribution to journal › Article › peer-review

Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry—Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS

Li, L., Andrén, P. E. & Sweedler, J. V., May 1 2018, In: Journal of the American Society for Mass Spectrometry. 29, 5, p. 801-806 6 p.

Research output: Contribution to journal › Article › peer-review

Effects of exercise and dietary epigallocatechin gallate and β-alanine on skeletal muscle in aged mice

Pence, B. D., Gibbons, T. E., Bhattacharya, T. K., Mach, H., Ossyra, J. M., Petr, G., Martin, S. A., Wang, L., Rubakhin, S. S., Sweedler, J. V., McCusker, R. H., Kelley, K. W., Rhodes, J. S., Johnson, R. W. & Woods, J. A., Oct 26 2015, In: Applied Physiology, Nutrition and Metabolism. 41, 2, p. 181-190 10 p.

Research output: Contribution to journal › Article › peer-review

Fibrinogen α-chain-derived peptide is upregulated in hippocampus of rats exposed to acute morphine injection and spontaneous alternation testing

Maki, A. E., Morris, K. A., Catherman, K., Chen, X., Hatcher, N. G., Gold, P. E. & Sweedler, J. V., Jun 2014, In: Pharmacology Research and Perspectives. 2, 3, e00037.

Research output: Contribution to journal › Article › peer-review

Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock

Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. U., Aug 15 2018, In: ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.

Research output: Contribution to journal › Article › peer-review

Gene network dysregulation in the trigeminal ganglia and nucleus accumbens of a model of chronic migraine-associated hyperalgesia

Jeong, H., Moye, L. S., Southey, B. R., Hernandez, A. G., Dripps, I., Romanova, E. V., Rubakhin, S. S., Sweedler, J. V., Pradhan, A. A. & Rodriguez-Zas, S. L., Dec 18 2018, In: Frontiers in Systems Neuroscience. 12, 63.

Research output: Contribution to journal › Article › peer-review

Identification of best indicators of peptide-spectrum match using a permutation resampling approach

Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 30 2014, In: Journal of Bioinformatics and Computational Biology. 12, 5, 1440001.

Research output: Contribution to journal › Article › peer-review

Identification of prohormones and pituitary neuropeptides in the African cichlid, Astatotilapia burtoni

Hu, C. K., Southey, B. R., Romanova, E. V., Maruska, K. P., Sweedler, J. V. & Fernald, R. D., Aug 19 2016, In: BMC genomics. 17, 1, 660.

Research output: Contribution to journal › Article › peer-review

Improved identification and quantitation of mature endogenous peptides in the rodent hypothalamus using a rapid conductive sample heating system

Yang, N., Anapindi, K. D. B., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Dec 7 2017, In: Analyst. 142, 23, p. 4476-4485 10 p.

Research output: Contribution to journal › Article › peer-review

Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways

Cho, K., Evans, B. S., Wood, B. M. K., Kumar, R., Erb, T. J., Warlick, B. P., Gerlt, J. A. & Sweedler, J. V., Jun 1 2015, In: Metabolomics. 11, 3, p. 503-517 15 p.

Research output: Contribution to journal › Article › peer-review

Interrogation of spatial metabolome of Ginkgo biloba with high-resolution matrix-assisted laser desorption/ionization and laser desorption/ionization mass spectrometry imaging

Li, B., Neumann, E. K., Ge, J., Gao, W., Yang, H., Li, P. & Sweedler, J. V., Nov 2018, In: Plant Cell and Environment. 41, 11, p. 2693-2703 11 p.

Research output: Contribution to journal › Article › peer-review

Lipid Analysis of 30 000 Individual Rodent Cerebellar Cells Using High-Resolution Mass Spectrometry

Neumann, E. K., Ellis, J. F., Triplett, A. E., Rubakhin, S. S. & Sweedler, J. V., Jan 1 2019, In: Analytical Chemistry.

Research output: Contribution to journal › Article › peer-review

Lipid Heterogeneity between Astrocytes and Neurons Revealed by Single-Cell MALDI-MS Combined with Immunocytochemical Classification

Neumann, E. K., Comi, T. J., Rubakhin, S. S. & Sweedler, J. V., Apr 23 2019, In: Angewandte Chemie - International Edition. 58, 18, p. 5910-5914 5 p.

Research output: Contribution to journal › Article › peer-review

MALDI-guided SIMS: Multiscale imaging of metabolites in bacterial biofilms

Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Aerts, J. T., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 1 2014, In: Analytical Chemistry. 86, 18, p. 9139-9145 7 p.

Research output: Contribution to journal › Article › peer-review

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