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2015
Fabrication and characterization of optogenetic, multi-strip cardiac muscles
Chan, V., Neal, D. M., Uzel, S. G. M., Kim, H., Bashir, R. & Asada, H. H., May 21 2015, In: Lab on a chip. 15, 10, p. 2258-2268 11 p.Research output: Contribution to journal › Article › peer-review
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Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction
Lee, M. K., Rich, M. H., Shkumatov, A., Jeong, J. H., Boppart, M. D., Bashir, R., Gillette, M. U., Lee, J. & Kong, H., Jan 1 2015, In: Advanced Healthcare Materials. 4, 2, p. 195-201 7 p.Research output: Contribution to journal › Article › peer-review
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Graphene-Based Platform for Infrared Near-Field Nanospectroscopy of Water and Biological Materials in an Aqueous Environment
Khatib, O., Wood, J. D., McLeod, A. S., Goldflam, M. D., Wagner, M., Damhorst, G. L., Koepke, J. C., Doidge, G. P., Rangarajan, A., Bashir, R., Pop, E., Lyding, J. W., Thiemens, M. H., Keilmann, F. & Basov, D. N., Aug 25 2015, In: ACS Nano. 9, 8, p. 7968-7975 8 p.Research output: Contribution to journal › Article › peer-review
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Impedance microbiology and microbial screening strategy for detecting pathogens in food
Flint, S., Naila, A. & Bashir, R., Jan 1 2015, High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 285-300 16 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli
Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In: Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.Research output: Contribution to journal › Article › peer-review
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Microfluidics and Nanotechnology for Detection of Global Infectious Diseases
Damhorst, G. L., Murtagh, M., Rodriguez, W. R. & Bashir, R., Feb 1 2015, In: Proceedings of the IEEE. 103, 2, p. 150-160 11 p., 7067024.Research output: Contribution to journal › Review article › peer-review
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Nanopore-based assay for detection of methylation in double-stranded DNA fragments
Shim, J., Kim, Y., Humphreys, G. I., Nardulli, A. M., Kosari, F., Vasmatzis, G., Taylor, W. R., Ahlquist, D. A., Myong, S. & Bashir, R., Jan 27 2015, In: ACS Nano. 9, 1, p. 290-300 11 p.Research output: Contribution to journal › Article › peer-review
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On-chip metal/polypyrrole quasi-reference electrodes for robust ISFET operation
Duarte-Guevara, C., Swaminathan, V. V., Burgess, M., Reddy, B., Salm, E., Liu, Y. S., Rodriguez-Lopez, J. & Bashir, R., May 21 2015, In: Analyst. 140, 10, p. 3630-3641 12 p.Research output: Contribution to journal › Article › peer-review
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Optomechanical measurement of the stiffness of single adherent cells
Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In: Lab on a chip. 15, 17, p. 3460-3464 5 p.Research output: Contribution to journal › Article › peer-review
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Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes
Neiman, J. A. S., Raman, R., Chan, V., Rhoads, M. G., Raredon, M. S. B., Velazquez, J. J., Dyer, R. L., Bashir, R., Hammond, P. T. & Griffith, L. G., Apr 1 2015, In: Biotechnology and bioengineering. 112, 4, p. 777-787 11 p.Research output: Contribution to journal › Article › peer-review
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Slowing DNA transport using graphene-DNA interactions
Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In: Advanced Functional Materials. 25, 6, p. 936-946 11 p.Research output: Contribution to journal › Article › peer-review
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Smartphone-Imaged HIV-1 Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) on a Chip from Whole Blood
Damhorst, G. L., Duarte-Guevara, C., Chen, W., Ghonge, T., Cunningham, B. T. & Bashir, R., Sep 1 2015, In: Engineering. 1, 3, p. 324-335 12 p.Research output: Contribution to journal › Article › peer-review
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Stereolithographic 3D bioprinting for biomedical applications
Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Tip-based nanofabrication of arbitrary shapes of graphene nanoribbons for device applications
Hu, H., Banerjee, S., Estrada, D., Bashir, R. & King, W. P., 2015, In: RSC Advances. 5, 46, p. 37006-37012 7 p.Research output: Contribution to journal › Article › peer-review
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2017
3D Printed Stem-Cell-Laden, Microchanneled Hydrogel Patch for the Enhanced Release of Cell-Secreting Factors and Treatment of Myocardial Infarctions
Melhem, M. R., Park, J., Knapp, L., Reinkensmeyer, L., Cvetkovic, C., Flewellyn, J., Lee, M. K., Jensen, T. W., Bashir, R., Kong, H. & Schook, L. B., Sep 11 2017, In: ACS Biomaterials Science and Engineering. 3, 9, p. 1980-1987 8 p.Research output: Contribution to journal › Article › peer-review
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A microfluidic technique to estimate antigen expression on particles
Ghonge, T., Ganguli, A., Valera, E., Saadah, M., Damhorst, G. L., Berger, J., Pagan Diaz, G., Hassan, U., Chheda, M., Haidry, Z., Liu, S., Hwu, C. & Bashir, R., Dec 1 2017, In: APL Bioengineering. 1, 1, 016103.Research output: Contribution to journal › Article › peer-review
Open Access -
A modular approach to the design, fabrication, and characterization of muscle-powered biological machines
Raman, R., Cvetkovic, C. & Bashir, R., Mar 1 2017, In: Nature Protocols. 12, 3, p. 519-533 15 p.Research output: Contribution to journal › Article › peer-review
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A point-of-care microfluidic biochip for quantification of CD64 expression from whole blood for sepsis stratification
Hassan, U., Ghonge, T., Reddy, B., Patel, M., Rappleye, M., Taneja, I., Tanna, A., Healey, R., Manusry, N., Price, Z., Jensen, T., Berger, J., Hasnain, A., Flaugher, E., Liu, S., Davis, B., Kumar, J., White, K. & Bashir, R., Jul 3 2017, In: Nature communications. 8, 15949.Research output: Contribution to journal › Article › peer-review
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Biohybrid actuators for robotics: A review of devices actuated by living cells
Ricotti, L., Trimmer, B., Feinberg, A. W., Raman, R., Parker, K. K., Bashir, R., Sitti, M., Martel, S., Dario, P. & Menciassi, A., Nov 22 2017, In: Science Robotics. 2, 12, eaaq0495.Research output: Contribution to journal › Review article › peer-review
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Biomimicry, Biofabrication, and Biohybrid Systems: The Emergence and Evolution of Biological Design
Raman, R. & Bashir, R., Oct 25 2017, In: Advanced Healthcare Materials. 6, 20, 1700496.Research output: Contribution to journal › Article › peer-review
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Characterization of a 1024 × 1024 DG-BioFET platform
Duarte-Guevara, C., Swaminathan, V., Reddy, B., Wen, C. H., Huang, Y. J., Huang, J. C., Liu, Y. S. & Bashir, R., 2017, In: Sensors and Actuators, B: Chemical. 250, p. 100-110 11 p.Research output: Contribution to journal › Article › peer-review
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Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis
Taneja, I., Reddy, B., Damhorst, G., Dave Zhao, S., Hassan, U., Price, Z., Jensen, T., Ghonge, T., Patel, M., Wachspress, S., Winter, J., Rappleye, M., Smith, G., Healey, R., Ajmal, M., Khan, M., Patel, J., Rawal, H., Sarwar, R., Soni, S. & 6 others, , Dec 1 2017, In: Scientific reports. 7, 1, 10800.Research output: Contribution to journal › Article › peer-review
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Damage, Healing, and Remodeling in Optogenetic Skeletal Muscle Bioactuators
Raman, R., Grant, L., Seo, Y., Cvetkovic, C., Gapinske, M., Palasz, A., Dabbous, H., Kong, H., Pinera, P. P. & Bashir, R., Jun 21 2017, In: Advanced Healthcare Materials. 6, 12, 1700030.Research output: Contribution to journal › Article › peer-review
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Defining the frontiers of bioengineering education at Illinois and beyond
Amos, J. R., Bashir, R., Cross, K. J., Herman, G. L., Loewenstein, J., Pool, M. A. & Silverman, D., Jun 24 2017, In: ASEE Annual Conference and Exposition, Conference Proceedings. 2017-JuneResearch output: Contribution to journal › Conference article › peer-review
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Detection of methylation on dsDNA using nanopores in a MoS2 membrane
Shim, J., Banerjee, S., Qiu, H., Smithe, K. K. H., Estrada, D., Bello, J., Pop, E., Schulten, K. & Bashir, R., Oct 31 2017, In: Nanoscale. 9, 39, p. 14836-14845 10 p.Research output: Contribution to journal › Article › peer-review
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Evidence of differential mass change rates between human breast cancer cell lines in culture
Corbin, E. A., Adeniba, O. O., Cangellaris, O. V., King, W. P. & Bashir, R., Mar 1 2017, In: Biomedical microdevices. 19, 1, 10.Research output: Contribution to journal › Article › peer-review
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Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya, and Dengue at point-of-care
Ganguli, A., Ornob, A., Yu, H., Damhorst, G. L., Chen, W., Sun, F., Bhuiya, A., Cunningham, B. T. & Bashir, R., Dec 1 2017, In: Biomedical microdevices. 19, 4, 73.Research output: Contribution to journal › Article › peer-review
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Integrated cantilever-based biosensors for the detection of chemical and biological entities
Corbin, E. A., YekrangSafakar, A., Adeniba, O., Gupta, A., Park, K. & Bashir, R., Jan 1 2017, Nanotechnology in Biology and Medicine: Methods, Devices, and Applications, Second Edition. CRC Press, p. 469-529 61 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Investigating the Life Expectancy and Proteolytic Degradation of Engineered Skeletal Muscle Biological Machines
Cvetkovic, C., Ferrall-Fairbanks, M. C., Ko, E., Grant, L., Kong, H., Platt, M. O. & Bashir, R., Dec 1 2017, In: Scientific reports. 7, 1, 3775.Research output: Contribution to journal › Article › peer-review
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Mobile Platform for Multiplexed Detection and Differentiation of Disease-Specific Nucleic Acid Sequences, Using Microfluidic Loop-Mediated Isothermal Amplification and Smartphone Detection
Chen, W., Yu, H., Sun, F., Ornob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Nov 7 2017, In: Analytical chemistry. 89, 21, p. 11219-11226 8 p.Research output: Contribution to journal › Article › peer-review
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Multiplexed detection of infectious diseases with microfluidic loop-mediated isothermal amplification and a smartphone
Sun, F., Chen, W., Yu, H., Omob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Dec 19 2017, 2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017. Institute of Electrical and Electronics Engineers Inc., p. 241-244 4 p. (2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017; vol. 2017-December).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2018
3D printing for preoperative planning and surgical training: a review
Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J., Kesavadas, T. & Bashir, R., Sep 1 2018, In: Biomedical microdevices. 20, 3, 65.Research output: Contribution to journal › Review article › peer-review
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A microfluidic biochip platform for electrical quantification of proteins
Valera, E., Berger, J., Hassan, U., Ghonge, T., Liu, J., Rappleye, M., Winter, J., Abboud, D., Haidry, Z., Healey, R., Hung, N. T., Leung, N., Mansury, N., Hasnain, A., Lannon, C., Price, Z., White, K. & Bashir, R., May 21 2018, In: Lab on a chip. 18, 10, p. 1461-1470 10 p.Research output: Contribution to journal › Article › peer-review
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Biodegradable Monocrystalline Silicon Photovoltaic Microcells as Power Supplies for Transient Biomedical Implants
Lu, L., Yang, Z., Meacham, K., Cvetkovic, C., Corbin, E. A., Vázquez-Guardado, A., Xue, M., Yin, L., Boroumand, J., Pakeltis, G., Sang, T., Yu, K. J., Chanda, D., Bashir, R., Gereau, R. W., Sheng, X. & Rogers, J. A., Jun 5 2018, In: Advanced Energy Materials. 8, 16, 1703035.Research output: Contribution to journal › Article › peer-review
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Detecting sepsis by observing neutrophil motility
Hassan, U., Valera, E. & Bashir, R., Apr 1 2018, In: Nature biomedical engineering. 2, 4, p. 197-198 2 p.Research output: Contribution to journal › Article › peer-review
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Mobile biosensing using the sensing capabilities of smartphone cameras
Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., Ganguli, A., Lumetta, S. & Bashir, R., Jan 4 2018, 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; vol. 2018-January).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis
Hassan, U., Zhu, R. & Bashir, R., Apr 21 2018, In: Lab on a chip. 18, 8, p. 1231-1240 10 p.Research output: Contribution to journal › Article › peer-review
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Optomechanical microrheology of single adherent cancer cells
Adeniba, O. O., Corbin, E. A., Ewoldt, R. H. & Bashir, R., Mar 1 2018, In: APL Bioengineering. 2, 1, 016108.Research output: Contribution to journal › Article › peer-review
Open Access -
Perspective: The promise of multi-cellular engineered living systems
Kamm, R. D., Bashir, R., Arora, N., Dar, R. D., Gillette, M. U., Griffith, L. G., Kemp, M. L., Kinlaw, K., Levin, M., Martin, A. C., McDevitt, T. C., Nerem, R. M., Powers, M. J., Saif, T. A., Sharpe, J., Takayama, S., Takeuchi, S., Weiss, R., Ye, K., Yevick, H. G. & 1 others, , Dec 1 2018, In: APL Bioengineering. 2, 4, 040901.Research output: Contribution to journal › Article › peer-review
Open Access -
Pixelated spatial gene expression analysis from tissue
Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In: Nature communications. 9, 1, 202.Research output: Contribution to journal › Article › peer-review
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Point-of-care sensors for the management of sepsis
Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In: Nature biomedical engineering. 2, 9, p. 640-648 9 p.Research output: Contribution to journal › Review article › peer-review
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Robust label-free microRNA detection using one million ISFET array
Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In: Biomedical microdevices. 20, 2, 1 p.Research output: Contribution to journal › Article › peer-review
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Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines
Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In: Advanced Functional Materials. 28, 23, 1801145.Research output: Contribution to journal › Article › peer-review
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2019
Conjugated Barcoded Particles for Multiplexed Biomarker Quantification with a Microfluidic Biochip
Prakash, S., Nagarajan, M., Doyle, P., Bashir, R. & Hassan, U., Nov 2019, 2019 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2019. Institute of Electrical and Electronics Engineers Inc., p. 139-142 4 p. 8962846. (2019 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2019).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Engineering geometrical 3-dimensional untethered in vitro neural tissue mimic
Pagan-Diaz, G. J., Ramos-Cruz, K. P., Sam, R., Kandel, M. E., Aydin, O., Saif, T. M. A., Popescu, G. & Bashir, R., Dec 17 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 51, p. 25932-25940 9 p.Research output: Contribution to journal › Article › peer-review
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Localized Dielectric Loss Heating in Dielectrophoresis Devices
Kwak, T. J., Hossen, I., Bashir, R., Chang, W. J. & Lee, C. H., Dec 1 2019, In: Scientific reports. 9, 1, 18977.Research output: Contribution to journal › Article › peer-review
Open Access -
Long-Term Cryopreservation and Revival of Tissue-Engineered Skeletal Muscle
Grant, L., Raman, R., Cvetkovic, C., Ferrall-Fairbanks, M. C., Pagan-Diaz, G. J., Hadley, P., Ko, E., Platt, M. O. & Bashir, R., Jul 1 2019, In: Tissue Engineering - Part A. 25, 13-14, p. 1023-1036 14 p.Research output: Contribution to journal › Article › peer-review
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Matrix Topography Regulates Synaptic Transmission at the Neuromuscular Junction
Ko, E., Yu, S. J., Pagan-Diaz, G. J., Mahmassani, Z., Boppart, M. D., Im, S. G., Bashir, R. & Kong, H., Mar 20 2019, In: Advanced Science. 6, 6, 1801521.Research output: Contribution to journal › Article › peer-review
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Monolayer MoS 2 Nanoribbon Transistors Fabricated by Scanning Probe Lithography
Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., Van Der Zande, A. M. & King, W. P., Mar 13 2019, In: Nano letters. 19, 3, p. 2092-2098 7 p.Research output: Contribution to journal › Article › peer-review
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Multi-cellular engineered living systems: Building a community around responsible research on emergence
Sample, M., Boulicault, M., Allen, C., Bashir, R., Hyun, I., Levis, M., Lowenthal, C., Mertz, D., Montserrat, N., Palmer, M. J., Saha, K. & Zartman, J., Jul 10 2019, In: Biofabrication. 11, 4, 043001.Research output: Contribution to journal › Review article › peer-review
Open Access